Wall clock time and date at job start Fri Apr 10 2020 23:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34704 * 117.00355 * 2 1 4 4 O 1.21470 * 119.99913 * 359.97438 * 3 2 1 5 5 C 1.47729 * 120.00213 * 180.02562 * 3 2 1 6 6 C 1.39645 * 120.14745 * 359.97438 * 5 3 2 7 7 C 1.37926 * 119.85251 * 180.02562 * 6 5 3 8 8 C 1.38396 * 120.14223 * 359.97438 * 7 6 5 9 9 C 1.38341 * 120.30500 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.92351 * 179.97438 * 9 8 7 11 11 H 1.08995 * 109.87380 * 199.56341 * 10 9 8 12 12 C 1.54329 * 109.87772 * 78.55107 * 10 9 8 13 13 C 1.55161 * 102.93774 * 218.38701 * 12 10 9 14 14 C 1.54912 * 101.58243 * 35.50453 * 13 12 10 15 15 N 1.47021 * 109.88371 * 320.74227 * 10 9 8 16 16 C 1.34777 * 125.64642 * 298.33620 * 15 10 9 17 17 O 1.21276 * 120.00239 * 359.97438 * 16 15 10 18 18 C 1.50704 * 119.99594 * 180.02562 * 16 15 10 19 19 C 1.50703 * 109.46688 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00140 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99947 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99956 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00147 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47249 * 89.99895 * 23 21 19 25 25 H 1.48507 * 109.47316 * 209.99421 * 23 21 19 26 26 H 1.48498 * 109.47183 * 329.99470 * 23 21 19 27 27 C 1.37968 * 120.15217 * 0.27909 * 9 8 7 28 28 H 1.09001 * 109.47592 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47149 * 300.00135 * 1 2 3 30 30 H 1.09006 * 109.47064 * 59.99983 * 1 2 3 31 31 H 1.08003 * 120.07691 * 0.02562 * 6 5 3 32 32 H 1.07990 * 119.92843 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.84221 * 180.02562 * 8 7 6 34 34 H 1.08994 * 110.72126 * 336.74950 * 12 10 9 35 35 H 1.08995 * 110.72231 * 99.85309 * 12 10 9 36 36 H 1.09008 * 111.00116 * 153.57520 * 13 12 10 37 37 H 1.08991 * 111.00625 * 277.42914 * 13 12 10 38 38 H 1.09000 * 110.36983 * 81.82753 * 14 13 12 39 39 H 1.08997 * 110.37014 * 204.03876 * 14 13 12 40 40 H 1.08997 * 109.46837 * 299.99329 * 18 16 15 41 41 H 1.08995 * 109.47342 * 59.99891 * 18 16 15 42 42 H 0.96996 * 119.99964 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.07319 * 179.72597 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 -0.0005 5 6 3.5389 1.2775 -0.0006 6 6 4.3024 0.1082 -0.0006 7 6 5.6794 0.1875 -0.0006 8 6 6.3044 1.4223 -0.0011 9 6 5.5541 2.5845 -0.0011 10 6 6.2437 3.9245 -0.0011 11 1 5.5544 4.6960 0.3421 12 6 6.7399 4.2593 -1.4236 13 6 8.1089 4.9413 -1.1624 14 6 8.6255 4.1434 0.0609 15 7 7.4244 3.8793 0.8738 16 6 7.4108 3.6370 2.1995 17 8 6.3591 3.4327 2.7679 18 6 8.7024 3.6210 2.9758 19 6 8.4134 3.3287 4.4257 20 1 7.3962 3.1708 4.7524 21 6 9.4475 3.2640 5.3353 22 7 10.6862 3.4568 4.9376 23 14 9.0892 2.9024 7.1325 24 1 9.1276 1.4353 7.3596 25 1 10.1121 3.5619 7.9836 26 1 7.7433 3.4226 7.4834 27 6 4.1759 2.5197 0.0052 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8158 -0.8560 -0.0006 32 1 6.2710 -0.7159 -0.0002 33 1 7.3829 1.4787 -0.0015 34 1 6.8678 3.3503 -2.0113 35 1 6.0532 4.9447 -1.9203 36 1 8.7748 4.8208 -2.0170 37 1 7.9797 5.9950 -0.9153 38 1 9.0790 3.2062 -0.2615 39 1 9.3444 4.7374 0.6252 40 1 9.3583 2.8489 2.5737 41 1 9.1895 4.5923 2.8906 42 1 11.4137 3.4108 5.5774 43 1 3.5915 3.4278 0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:31:22 Heat of formation + Delta-G solvation = -115.239593 kcal Electronic energy + Delta-G solvation = -26374.651613 eV Core-core repulsion = 22576.901635 eV Total energy + Delta-G solvation = -3797.749978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81274 -41.21655 -39.60387 -38.15935 -37.54748 -35.13113 -33.37499 -32.60719 -32.29214 -30.71400 -29.11226 -28.48365 -26.04825 -25.22185 -24.26811 -23.01776 -22.29215 -21.61493 -20.08406 -18.71393 -18.56767 -18.22321 -17.57247 -17.45726 -17.36465 -16.99647 -16.58892 -15.96092 -15.67743 -15.52060 -15.05330 -14.66155 -14.62445 -14.40709 -14.37502 -14.12144 -13.85632 -13.57838 -13.32118 -13.13760 -13.03500 -12.90400 -12.77436 -12.59427 -12.49717 -12.10286 -12.06299 -12.01496 -11.88328 -11.68148 -11.58826 -11.42148 -10.63572 -10.55051 -10.09258 -9.87746 -9.53019 -8.26708 -6.33643 -0.38879 0.28887 1.38083 1.38664 1.40135 1.51433 1.59012 1.88707 2.15052 2.42992 2.72451 3.08353 3.51328 3.62696 3.67619 3.76066 3.88841 4.07574 4.14788 4.21358 4.26499 4.29601 4.33083 4.39544 4.44645 4.59288 4.66734 4.74607 4.84949 4.91230 4.94301 5.00276 5.05584 5.12227 5.14027 5.19132 5.25987 5.32253 5.35795 5.44216 5.58820 5.74072 5.80663 6.06377 6.57241 6.63396 6.80975 7.33076 7.48329 8.85345 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.003790 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.769242 B = 7385.626829 C = 8918.894576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.538 6.538 5 C -0.146 4.146 6 C -0.060 4.060 7 C -0.130 4.130 8 C -0.072 4.072 9 C -0.099 4.099 10 C 0.166 3.834 11 H 0.063 0.937 12 C -0.110 4.110 13 C -0.118 4.118 14 C 0.090 3.910 15 N -0.620 5.620 16 C 0.531 3.469 17 O -0.579 6.579 18 C 0.022 3.978 19 C -0.537 4.537 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.960 3.040 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.278 1.278 27 C -0.057 4.057 28 H 0.139 0.861 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.268 0.732 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.889 -5.710 -18.998 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.430 6.430 5 C -0.147 4.147 6 C -0.078 4.078 7 C -0.148 4.148 8 C -0.090 4.090 9 C -0.100 4.100 10 C 0.062 3.938 11 H 0.081 0.919 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.032 4.032 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.458 6.458 18 C -0.017 4.017 19 C -0.576 4.576 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.561 5.561 23 Si 0.785 3.215 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.203 1.203 27 C -0.076 4.076 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.488 -5.539 -18.543 22.011 hybrid contribution -0.327 0.159 1.424 1.469 sum -10.815 -5.380 -17.119 20.952 Atomic orbital electron populations 1.23626 0.74112 1.06101 1.02629 1.86525 1.25395 1.31285 1.83788 1.21332 0.89280 0.81602 0.71727 1.90801 1.67439 1.37106 1.47643 1.19125 0.88957 0.95487 1.11149 1.21664 0.93974 0.98005 0.94160 1.21471 0.94581 0.98478 1.00234 1.21426 1.00685 0.92293 0.94644 1.20110 0.92926 0.96359 1.00567 1.20613 0.87806 0.92717 0.92652 0.91860 1.22705 0.97770 1.02467 0.91780 1.22798 0.96311 0.99238 0.97189 1.22593 0.87302 1.00751 0.92550 1.48799 1.09003 1.71385 1.06326 1.21238 0.92064 0.73899 0.80554 1.90537 1.35032 1.50636 1.69586 1.18967 0.90155 0.98328 0.94297 1.21355 0.93712 1.48897 0.93609 0.93121 1.25724 0.94682 0.94751 1.03328 1.70018 0.99381 1.50318 1.36409 0.85519 0.77849 0.78746 0.79363 1.19523 1.19636 1.20306 1.21040 0.94062 0.96939 0.95533 0.84341 0.92306 0.91494 0.82204 0.82300 0.85374 0.89017 0.87957 0.86449 0.90335 0.90203 0.90978 0.94187 0.94487 0.92328 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.13 9.82 -56.14 -0.55 -8.68 16 3 C 0.51 14.90 7.90 70.33 0.56 15.46 16 4 O -0.54 -18.29 16.14 19.93 0.32 -17.96 16 5 C -0.15 -4.23 5.87 -20.10 -0.12 -4.35 16 6 C -0.06 -1.45 9.62 22.54 0.22 -1.23 16 7 C -0.13 -3.13 10.03 22.23 0.22 -2.91 16 8 C -0.07 -2.04 9.12 22.33 0.20 -1.84 16 9 C -0.10 -3.00 4.09 -19.90 -0.08 -3.08 16 10 C 0.17 4.83 3.05 44.60 0.14 4.97 16 11 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 12 C -0.11 -1.99 6.46 31.79 0.21 -1.79 16 13 C -0.12 -1.98 7.09 31.99 0.23 -1.76 16 14 C 0.09 2.30 6.69 86.86 0.58 2.88 16 15 N -0.62 -21.58 2.33 -792.17 -1.85 -23.43 16 16 C 0.53 25.15 7.50 87.66 0.66 25.81 16 17 O -0.58 -31.97 15.30 -3.02 -0.05 -32.02 16 18 C 0.02 1.15 4.47 29.10 0.13 1.28 16 19 C -0.54 -32.30 8.92 25.60 0.23 -32.07 16 20 H 0.05 3.24 6.75 -2.91 -0.02 3.22 16 21 C 0.01 0.81 5.46 84.65 0.46 1.27 16 22 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 23 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 27 C -0.06 -1.78 9.22 22.54 0.21 -1.57 16 28 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.16 2.96 7.61 -2.91 -0.02 2.94 16 32 H 0.16 2.84 8.06 -2.92 -0.02 2.82 16 33 H 0.13 3.51 7.70 -2.91 -0.02 3.49 16 34 H 0.09 1.46 7.78 -2.39 -0.02 1.44 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.01 7.48 -2.39 -0.02 1.99 16 40 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.98 7.85 -2.39 -0.02 1.96 16 42 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.13 3.99 7.63 -2.91 -0.02 3.97 16 Total: -1.00 -78.57 366.07 6.23 -72.34 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.01 Total: 12.70 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.03 Total: 2.71 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.56 Total: -77.04 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -0.28 Total: -58.66 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.57 6.23 -72.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.897 kcal (2) G-P(sol) polarization free energy of solvation -78.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds