Wall clock time and date at job start Fri Apr 10 2020 23:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86807 * 119.99707 * 2 1 4 4 H 1.48505 * 109.46764 * 270.27082 * 3 2 1 5 5 H 1.48498 * 109.47248 * 30.27051 * 3 2 1 6 6 H 1.48498 * 109.47160 * 150.27370 * 3 2 1 7 7 C 1.40032 * 120.00524 * 180.26938 * 2 1 3 8 8 H 1.07998 * 120.00443 * 169.95701 * 7 2 1 9 9 C 1.41541 * 119.99408 * 349.96029 * 7 2 1 10 10 C 1.41180 * 120.99506 * 151.93741 * 9 7 2 11 11 C 1.37590 * 119.01539 * 180.02562 * 10 9 7 12 12 N 1.32080 * 121.10967 * 359.97438 * 11 10 9 13 13 C 1.32464 * 122.23169 * 0.02562 * 12 11 10 14 14 N 1.39476 * 119.58042 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99964 * 5.06852 * 14 13 12 16 16 O 1.21285 * 119.99766 * 354.97417 * 15 14 13 17 17 C 1.50696 * 120.00227 * 174.96717 * 15 14 13 18 18 H 1.08999 * 109.47257 * 60.00229 * 17 15 14 19 19 C 1.53005 * 109.46945 * 300.00299 * 17 15 14 20 20 C 1.52998 * 109.47244 * 299.99445 * 19 17 15 21 21 C 1.53001 * 109.47261 * 300.00586 * 20 19 17 22 22 C 1.52991 * 109.47338 * 59.99628 * 21 20 19 23 23 H 1.09003 * 109.46956 * 60.00047 * 22 21 20 24 24 C 1.50706 * 109.47109 * 179.97438 * 22 21 20 25 25 N 1.34773 * 119.99841 * 299.99913 * 24 22 21 26 26 O 1.21280 * 119.99653 * 120.00235 * 24 22 21 27 27 C 1.52994 * 109.47530 * 300.00172 * 22 21 20 28 28 C 1.38599 * 120.84280 * 359.70871 * 13 12 11 29 29 H 0.96999 * 119.99998 * 359.72838 * 1 2 3 30 30 H 1.08002 * 120.49199 * 359.97395 * 10 9 7 31 31 H 1.07999 * 119.44456 * 180.02562 * 11 10 9 32 32 H 0.97004 * 120.00059 * 185.06815 * 14 13 12 33 33 H 1.09000 * 109.47205 * 60.00046 * 19 17 15 34 34 H 1.09003 * 109.46828 * 179.97438 * 19 17 15 35 35 H 1.08996 * 109.46931 * 180.02562 * 20 19 17 36 36 H 1.09003 * 109.46870 * 60.00440 * 20 19 17 37 37 H 1.09003 * 109.46537 * 299.99677 * 21 20 19 38 38 H 1.09004 * 109.47057 * 180.02562 * 21 20 19 39 39 H 0.96997 * 120.00267 * 0.02562 * 25 24 22 40 40 H 0.96999 * 119.99573 * 179.97438 * 25 24 22 41 41 H 1.09003 * 109.47109 * 300.00419 * 27 22 21 42 42 H 1.09004 * 109.47538 * 179.97438 * 27 22 21 43 43 H 1.08001 * 120.60951 * 180.30878 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4831 2.0498 -1.4001 5 1 1.4417 2.6511 0.7057 6 1 3.5418 1.4387 0.6942 7 6 2.0077 -1.2126 -0.0057 8 1 3.0752 -1.2190 -0.1688 9 6 1.3162 -2.4300 0.2023 10 6 1.7929 -3.6399 -0.3473 11 6 1.0881 -4.7996 -0.1199 12 7 -0.0190 -4.7952 0.6003 13 6 -0.5079 -3.6876 1.1377 14 7 -1.6814 -3.7467 1.8892 15 6 -2.2547 -4.9380 2.1508 16 8 -1.8028 -5.9498 1.6577 17 6 -3.4571 -5.0131 3.0561 18 1 -4.2671 -4.4180 2.6344 19 6 -3.0899 -4.4681 4.4378 20 6 -1.9530 -5.3033 5.0299 21 6 -2.4039 -6.7597 5.1593 22 6 -2.7710 -7.3046 3.7777 23 1 -1.9013 -7.2503 3.1229 24 6 -3.2146 -8.7392 3.9051 25 7 -2.3711 -9.6634 4.4060 26 8 -4.3306 -9.0621 3.5568 27 6 -3.9080 -6.4694 3.1856 28 6 0.1353 -2.4716 0.9681 29 1 -0.4850 0.8400 0.0040 30 1 2.6968 -3.6549 -0.9382 31 1 1.4467 -5.7291 -0.5367 32 1 -2.0849 -2.9304 2.2235 33 1 -2.7687 -3.4306 4.3456 34 1 -3.9598 -4.5219 5.0925 35 1 -1.6917 -4.9154 6.0144 36 1 -1.0832 -5.2491 4.3751 37 1 -3.2736 -6.8138 5.8141 38 1 -1.5940 -7.3546 5.5815 39 1 -1.4787 -9.4051 4.6848 40 1 -2.6568 -10.5867 4.4883 41 1 -4.7777 -6.5235 3.8404 42 1 -4.1692 -6.8573 2.2010 43 1 -0.2640 -1.5717 1.4120 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527300233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:31:27 Heat of formation + Delta-G solvation = -82.058826 kcal Electronic energy + Delta-G solvation = -26759.978737 eV Core-core repulsion = 22995.960336 eV Total energy + Delta-G solvation = -3764.018401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91444 -40.67972 -39.70940 -37.71539 -36.07449 -35.47859 -34.71523 -32.51781 -32.17168 -31.74334 -30.15785 -27.88258 -25.16176 -24.83037 -23.80839 -22.99861 -22.12307 -21.15724 -20.38799 -19.42745 -18.52371 -18.06457 -17.52668 -17.28788 -16.90767 -16.50164 -16.04908 -16.04756 -15.74939 -15.69517 -15.17093 -14.92207 -14.69948 -14.48661 -14.32382 -14.09960 -13.64254 -13.30532 -13.19662 -13.05497 -12.96862 -12.84659 -12.66237 -12.15313 -12.08205 -11.89693 -11.81574 -11.60780 -11.38875 -11.14732 -11.10804 -10.78881 -10.64048 -10.58036 -9.88169 -9.52970 -8.83455 -8.57235 -6.56069 0.77107 1.01868 1.42237 1.53212 1.57031 1.65816 1.94923 2.20533 2.22225 2.64199 2.84754 3.58941 3.66102 3.72285 3.77330 3.97026 4.13451 4.20944 4.29984 4.33644 4.43962 4.55023 4.68751 4.73727 4.78004 4.88216 4.93622 4.99765 5.05386 5.11412 5.13972 5.24218 5.25184 5.27272 5.31105 5.45897 5.50553 5.69632 5.91842 5.94335 6.18189 6.43806 6.51237 6.65120 6.81354 6.86115 7.34755 7.39534 7.86126 8.31453 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.003167 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.807688 B = 8837.803191 C = 9381.373110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.115 3.885 10 C -0.297 4.297 11 C 0.111 3.889 12 N -0.571 5.571 13 C 0.335 3.665 14 N -0.651 5.651 15 C 0.503 3.497 16 O -0.518 6.518 17 C -0.099 4.099 18 H 0.121 0.879 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.100 4.100 22 C -0.121 4.121 23 H 0.102 0.898 24 C 0.524 3.476 25 N -0.838 5.838 26 O -0.593 6.593 27 C -0.072 4.072 28 C -0.254 4.254 29 H 0.291 0.709 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.420 0.580 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.406 0.594 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.120 -5.273 13.323 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.321 4.321 11 C -0.043 4.043 12 N -0.291 5.291 13 C 0.109 3.891 14 N -0.298 5.298 15 C 0.290 3.710 16 O -0.391 6.391 17 C -0.121 4.121 18 H 0.139 0.861 19 C -0.145 4.145 20 C -0.159 4.159 21 C -0.137 4.137 22 C -0.142 4.142 23 H 0.120 0.880 24 C 0.310 3.690 25 N -0.402 5.402 26 O -0.473 6.473 27 C -0.111 4.111 28 C -0.279 4.279 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.165 0.835 32 H 0.258 0.742 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.238 0.762 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.242 -6.721 12.896 15.825 hybrid contribution 1.106 1.444 -0.576 1.908 sum -5.136 -5.276 12.320 14.352 Atomic orbital electron populations 1.69782 1.08835 1.30758 1.35176 1.26766 0.95670 1.04389 0.90935 0.85121 0.79051 0.75676 0.79372 1.19067 1.18780 1.18244 1.19835 0.96159 0.90972 1.44934 0.90064 1.18001 0.91118 0.93160 0.87013 1.22119 1.05288 0.94591 1.10066 1.22197 0.90443 0.97345 0.94297 1.67361 1.15957 1.28765 1.17004 1.18472 0.87861 0.90239 0.92510 1.43547 1.23593 1.10679 1.51958 1.21505 0.85436 0.82574 0.81459 1.90671 1.63481 1.34839 1.50130 1.21488 0.94975 0.99243 0.96361 0.86088 1.21617 1.00232 0.99495 0.93195 1.21562 0.97518 0.95044 1.01817 1.21506 1.02311 0.96367 0.93544 1.21583 1.01530 0.90480 1.00570 0.87980 1.20920 0.84219 0.89014 0.74864 1.43727 1.18364 1.11999 1.66082 1.90681 1.22601 1.82874 1.51192 1.21045 0.97243 0.91799 1.00968 1.21572 1.01963 0.95830 1.08563 0.89841 0.86867 0.83506 0.74197 0.90338 0.87676 0.89049 0.94723 0.89924 0.90156 0.75493 0.76234 0.89216 0.93691 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.72 10.85 21.84 0.24 -39.48 16 2 C 0.04 1.82 5.30 85.29 0.45 2.27 16 3 Si 0.99 35.61 29.57 68.60 2.03 37.64 16 4 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 7 C -0.49 -25.05 9.13 23.52 0.21 -24.83 16 8 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 9 C 0.12 6.08 5.58 -21.11 -0.12 5.96 16 10 C -0.30 -14.60 9.90 22.84 0.23 -14.37 16 11 C 0.11 5.28 11.15 84.50 0.94 6.23 16 12 N -0.57 -28.56 7.85 -193.53 -1.52 -30.08 16 13 C 0.34 15.89 7.42 132.75 0.98 16.88 16 14 N -0.65 -24.10 5.24 -308.66 -1.62 -25.72 16 15 C 0.50 17.49 5.60 87.66 0.49 17.98 16 16 O -0.52 -22.33 11.91 -3.05 -0.04 -22.36 16 17 C -0.10 -2.35 3.01 -11.54 -0.03 -2.39 16 18 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 19 C -0.11 -1.89 5.36 30.60 0.16 -1.73 16 20 C -0.12 -2.35 5.70 30.59 0.17 -2.18 16 21 C -0.10 -1.78 5.10 30.59 0.16 -1.62 16 22 C -0.12 -3.03 2.23 -11.54 -0.03 -3.06 16 23 H 0.10 3.27 5.51 -2.39 -0.01 3.25 16 24 C 0.52 13.64 7.43 87.66 0.65 14.29 16 25 N -0.84 -14.41 8.77 -173.53 -1.52 -15.93 16 26 O -0.59 -20.13 16.82 -3.03 -0.05 -20.18 16 27 C -0.07 -1.88 3.66 30.59 0.11 -1.76 16 28 C -0.25 -12.77 8.59 22.99 0.20 -12.57 16 29 H 0.29 12.61 8.29 -92.71 -0.77 11.84 16 30 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 31 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 32 H 0.42 12.73 8.28 -92.71 -0.77 11.96 16 33 H 0.08 1.29 7.68 -2.39 -0.02 1.27 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.03 0.92 7.22 -2.39 -0.02 0.90 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.16 7.56 -2.39 -0.02 1.15 16 39 H 0.41 5.04 8.25 -92.71 -0.76 4.28 16 40 H 0.41 5.80 8.93 -92.71 -0.83 4.97 16 41 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 42 H 0.04 1.43 8.06 -2.38 -0.02 1.42 16 43 H 0.12 6.20 6.28 -2.91 -0.02 6.19 16 Total: -1.00 -72.77 348.18 0.83 -71.94 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -1.28 Total: 45.08 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.59 Total: -0.92 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.42 Total: -111.20 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.09 Total: -42.54 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -72.77 0.83 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527300233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.119 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds