Wall clock time and date at job start Fri Apr 10 2020 23:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 H 1.09001 * 109.50998 * 305.00135 * 3 2 1 5 5 C 1.53289 * 109.51357 * 184.89952 * 3 2 1 6 6 N 1.47149 * 108.38495 * 187.72321 * 5 3 2 7 7 S 1.65598 * 120.98199 * 230.55757 * 6 5 3 8 8 O 1.42104 * 104.27907 * 206.07090 * 7 6 5 9 9 O 1.42096 * 104.28146 * 333.92778 * 7 6 5 10 10 C 1.81401 * 104.44938 * 90.00064 * 7 6 5 11 11 C 1.53004 * 109.47044 * 173.93545 * 10 7 6 12 12 C 1.50693 * 115.55148 * 39.91265 * 11 10 7 13 13 H 1.08002 * 120.00269 * 264.78632 * 12 11 10 14 14 C 1.37884 * 119.99893 * 84.78441 * 12 11 10 15 15 N 1.31509 * 120.00151 * 353.00986 * 14 12 11 16 16 Si 1.86803 * 119.99787 * 173.00279 * 14 12 11 17 17 H 1.48500 * 109.47187 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46695 * 120.00235 * 16 14 12 19 19 H 1.48496 * 109.47393 * 240.00140 * 16 14 12 20 20 C 1.53008 * 117.49950 * 254.20331 * 11 10 7 21 21 C 1.53001 * 60.00184 * 252.51254 * 20 11 10 22 22 C 1.47150 * 118.03544 * 50.53375 * 6 5 3 23 23 H 1.09001 * 109.68353 * 189.70175 * 22 6 5 24 24 C 1.53001 * 109.68226 * 69.18971 * 22 6 5 25 25 C 1.53289 * 108.38681 * 309.46731 * 22 6 5 26 26 O 1.42961 * 109.55133 * 65.12336 * 3 2 1 27 27 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47129 * 299.99396 * 1 2 3 29 29 H 1.09000 * 109.47456 * 60.00138 * 1 2 3 30 30 H 1.09006 * 109.46981 * 240.00269 * 2 1 3 31 31 H 1.09001 * 109.47427 * 120.00415 * 2 1 3 32 32 H 1.08995 * 109.68381 * 307.44548 * 5 3 2 33 33 H 1.09006 * 109.67970 * 68.00024 * 5 3 2 34 34 H 1.09000 * 109.46971 * 293.93081 * 10 7 6 35 35 H 1.09003 * 109.47327 * 53.93746 * 10 7 6 36 36 H 0.96997 * 120.00282 * 185.02577 * 15 14 12 37 37 H 1.09000 * 117.49558 * 0.02562 * 20 11 10 38 38 H 1.08991 * 117.49678 * 145.01922 * 20 11 10 39 39 H 1.08997 * 117.49923 * 252.51046 * 21 20 11 40 40 H 1.08997 * 117.50275 * 107.48674 * 21 20 11 41 41 H 1.09004 * 109.46692 * 59.99700 * 24 22 6 42 42 H 1.09001 * 109.47443 * 179.97438 * 24 22 6 43 43 H 1.09004 * 109.47228 * 300.00263 * 24 22 6 44 44 H 1.09000 * 109.51694 * 172.22831 * 25 22 6 45 45 H 1.09004 * 109.51200 * 292.32779 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9822 -0.8416 5 6 3.5680 1.4454 -0.1234 6 7 4.0463 2.8241 0.0657 7 16 5.0858 3.5219 -1.0181 8 8 5.7797 4.5013 -0.2574 9 8 5.7743 2.4237 -1.6004 10 6 4.0027 4.3138 -2.2388 11 6 4.8491 5.1273 -3.2200 12 6 6.1452 4.4872 -3.6462 13 1 7.0632 4.7331 -3.1331 14 6 6.1590 3.5877 -4.6910 15 7 5.0275 3.1834 -5.2257 16 14 7.7849 2.9433 -5.3473 17 1 8.9031 3.5480 -4.5796 18 1 7.8269 1.4661 -5.2015 19 1 7.9172 3.3031 -6.7819 20 6 4.8259 6.6506 -3.0788 21 6 4.1094 5.9802 -4.2527 22 6 3.5731 3.5645 1.2460 23 1 3.8662 4.6112 1.1646 24 6 4.1791 2.9569 2.5126 25 6 2.0449 3.4584 1.3027 26 8 1.6652 2.0825 1.2222 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.9992 0.7992 0.6410 33 1 3.8571 1.0888 -1.1121 34 1 3.4493 3.5490 -2.7838 35 1 3.3023 4.9749 -1.7285 36 1 5.0328 2.4967 -5.9107 37 1 4.2079 7.0732 -2.2866 38 1 5.7482 7.1901 -3.2939 39 1 4.5603 6.0787 -5.2401 40 1 3.0197 5.9618 -4.2331 41 1 5.2662 3.0169 2.4601 42 1 3.8268 3.5081 3.3845 43 1 3.8765 1.9130 2.5955 44 1 1.6851 3.8811 2.2408 45 1 1.6106 4.0062 0.4663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593643319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:11 Heat of formation + Delta-G solvation = -98.947221 kcal Electronic energy + Delta-G solvation = -26966.876891 eV Core-core repulsion = 23305.277355 eV Total energy + Delta-G solvation = -3661.599537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.62790 -36.75555 -36.25380 -35.25849 -34.88139 -34.03063 -32.07615 -31.13637 -28.25518 -27.77290 -26.13905 -25.48342 -23.88917 -21.73423 -21.23109 -20.34623 -19.38676 -18.21708 -17.25770 -16.66698 -16.47593 -15.59584 -15.34953 -15.05222 -14.94024 -14.71897 -14.26851 -13.89234 -13.75168 -13.60971 -13.20735 -13.09525 -12.75821 -12.25322 -12.23282 -11.98023 -11.86292 -11.71984 -11.35762 -11.25782 -11.14038 -11.08066 -11.00932 -10.99594 -10.91863 -10.86883 -10.53016 -10.40978 -10.25510 -10.21815 -10.00052 -9.62472 -8.96422 -8.61014 -8.55172 -8.11940 -6.18526 -4.33007 1.09659 3.29081 3.36626 3.38190 3.43592 3.71561 4.37920 4.58852 4.69567 4.80821 4.87706 4.95474 5.05607 5.07800 5.11730 5.17202 5.22357 5.30791 5.41978 5.50323 5.55042 5.58949 5.68974 5.71625 5.76256 5.89156 5.92607 5.94792 5.98487 6.06877 6.22532 6.24971 6.29054 6.32342 6.42552 6.58594 6.66747 6.83161 6.93892 7.15498 7.17454 7.36569 7.76502 8.16075 8.76052 9.44213 10.89115 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.005205 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.454369 B = 5378.106442 C = 5777.614012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.075 3.925 4 H 0.065 0.935 5 C 0.094 3.906 6 N -1.013 6.013 7 S 2.622 3.378 8 O -0.970 6.970 9 O -0.938 6.938 10 C -0.559 4.559 11 C 0.050 3.950 12 C -0.542 4.542 13 H 0.069 0.931 14 C 0.097 3.903 15 N -0.867 5.867 16 Si 0.892 3.108 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.282 1.282 20 C -0.204 4.204 21 C -0.144 4.144 22 C 0.113 3.887 23 H 0.102 0.898 24 C -0.153 4.153 25 C 0.054 3.946 26 O -0.372 6.372 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.093 0.907 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -2.976 11.236 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.016 3.984 4 H 0.083 0.917 5 C -0.031 4.031 6 N -0.848 5.848 7 S 2.720 3.280 8 O -0.961 6.961 9 O -0.928 6.928 10 C -0.691 4.691 11 C 0.047 3.953 12 C -0.580 4.580 13 H 0.087 0.913 14 C -0.110 4.110 15 N -0.501 5.501 16 Si 0.719 3.281 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.208 1.208 20 C -0.241 4.241 21 C -0.183 4.183 22 C 0.006 3.994 23 H 0.120 0.880 24 C -0.212 4.212 25 C -0.024 4.024 26 O -0.290 6.290 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.791 -3.210 11.271 14.650 hybrid contribution 0.189 -0.054 -0.934 0.955 sum -8.602 -3.264 10.337 13.838 Atomic orbital electron populations 1.21698 0.95174 1.01398 1.02255 1.21522 0.96757 0.94015 1.03099 1.22568 0.93866 0.94430 0.87516 0.91749 1.22003 0.94107 0.83271 1.03765 1.58567 1.67003 1.22148 1.37107 1.04829 0.74897 0.74555 0.73717 1.93467 1.70163 1.62846 1.69600 1.93523 1.69324 1.52012 1.77942 1.30028 1.13208 1.11683 1.14220 1.18192 0.95186 0.86573 0.95303 1.20628 0.91820 1.27221 1.18298 0.91274 1.24900 0.96638 0.94705 0.94762 1.69955 1.25769 1.27736 1.26613 0.86514 0.83950 0.79265 0.78378 1.19199 1.20274 1.20796 1.23122 1.02063 0.97792 1.01140 1.22528 0.96224 1.05007 0.94512 1.21557 0.94577 0.96958 0.86283 0.87984 1.21992 1.01400 1.01770 0.96056 1.22964 0.93541 0.83477 1.02465 1.87889 1.79513 1.23533 1.38109 0.92846 0.92059 0.92840 0.90126 0.90964 0.90811 0.88158 0.85607 0.88854 0.92585 0.91304 0.89660 0.89611 0.91659 0.92065 0.91829 0.91812 0.88026 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.81 37.16 0.36 -1.03 16 2 C -0.12 -1.20 5.65 -26.73 -0.15 -1.35 16 3 C 0.08 0.94 2.77 -26.58 -0.07 0.86 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 5 C 0.09 1.37 5.40 -3.54 -0.02 1.35 16 6 N -1.01 -16.52 2.97 -106.04 -0.31 -16.83 16 7 S 2.62 55.81 4.60 -107.50 -0.49 55.32 16 8 O -0.97 -22.43 16.81 -57.54 -0.97 -23.39 16 9 O -0.94 -23.24 15.94 -57.54 -0.92 -24.16 16 10 C -0.56 -11.75 6.29 37.16 0.23 -11.51 16 11 C 0.05 1.21 1.64 -155.65 -0.26 0.95 16 12 C -0.54 -14.89 6.89 -34.44 -0.24 -15.13 16 13 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 14 C 0.10 2.67 5.39 -17.82 -0.10 2.58 16 15 N -0.87 -23.82 12.96 55.43 0.72 -23.10 16 16 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.20 -4.41 9.88 -26.73 -0.26 -4.68 16 21 C -0.14 -3.26 9.50 -26.73 -0.25 -3.52 16 22 C 0.11 1.54 3.10 -67.43 -0.21 1.33 16 23 H 0.10 1.39 7.23 -51.93 -0.38 1.02 16 24 C -0.15 -1.90 9.24 37.16 0.34 -1.56 16 25 C 0.05 0.62 6.36 37.31 0.24 0.85 16 26 O -0.37 -4.64 9.56 -35.23 -0.34 -4.97 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 33 H 0.10 1.54 7.23 -51.93 -0.38 1.17 16 34 H 0.13 2.67 8.14 -51.92 -0.42 2.25 16 35 H 0.09 1.63 7.95 -51.92 -0.41 1.22 16 36 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.78 7.23 -51.93 -0.38 0.41 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -32.15 370.79 -9.93 -42.09 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.80 Total: 3.49 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: -0.38 Total: -30.85 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.40 Total: -39.93 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -2.22 Total: -52.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.49 Total: 55.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.15 -9.93 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593643319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.862 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds