Wall clock time and date at job start Fri Apr 10 2020 23:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47043 * 2 1 4 4 C 1.52999 * 109.46587 * 239.99925 * 2 1 3 5 5 C 1.50704 * 109.47040 * 60.00489 * 4 2 1 6 6 H 1.08006 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99887 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99799 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46973 * 90.00415 * 9 7 5 11 11 H 1.48500 * 109.46904 * 209.99989 * 9 7 5 12 12 H 1.48497 * 109.47341 * 330.00289 * 9 7 5 13 13 C 1.52994 * 109.46939 * 120.00470 * 2 1 3 14 14 N 1.46496 * 109.47367 * 299.99552 * 13 2 1 15 15 C 1.34780 * 120.00223 * 180.02562 * 14 13 2 16 16 O 1.21625 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.47216 * 119.99900 * 180.02562 * 15 14 13 18 18 C 1.37965 * 126.81645 * 0.19010 * 17 15 14 19 19 N 1.34138 * 107.93787 * 180.26387 * 18 17 15 20 20 H 0.97003 * 125.13541 * 179.72262 * 19 18 17 21 21 N 1.39769 * 109.72769 * 359.71810 * 19 18 17 22 22 C 1.31591 * 109.04583 * 0.02562 * 21 19 18 23 23 C 1.47664 * 126.53975 * 179.97438 * 22 21 19 24 24 C 1.36021 * 125.93712 * 324.73853 * 23 22 21 25 25 C 1.40894 * 106.73622 * 180.26342 * 24 23 22 26 26 C 1.34754 * 107.04346 * 359.97438 * 25 24 23 27 27 O 1.34298 * 108.68159 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 29 29 H 1.08998 * 109.47539 * 59.99099 * 1 2 3 30 30 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46613 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47489 * 300.00064 * 3 2 1 33 33 H 1.09000 * 109.47204 * 60.00988 * 3 2 1 34 34 H 1.09003 * 109.47377 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47861 * 300.00351 * 4 2 1 36 36 H 0.97001 * 119.99785 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47150 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47509 * 60.00099 * 13 2 1 39 39 H 0.96995 * 120.00051 * 0.02562 * 14 13 2 40 40 H 1.07998 * 126.03216 * 359.97438 * 18 17 15 41 41 H 1.07997 * 126.62823 * 0.24315 * 24 23 22 42 42 H 1.08006 * 126.47929 * 180.02562 * 25 24 23 43 43 H 1.08003 * 125.66243 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4321 0.1383 -4.8058 9 14 2.9459 -1.9996 -3.9035 10 1 2.0881 -3.2109 -3.9491 11 1 3.7378 -1.9064 -5.1563 12 1 3.8663 -2.0882 -2.7415 13 6 2.0400 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4911 3.6695 16 8 2.5769 -1.4800 3.7810 17 6 1.3866 0.2026 4.8715 18 6 0.5866 1.3259 4.9089 19 7 0.3740 1.6390 6.1958 20 1 -0.1542 2.3905 6.5076 21 7 1.0282 0.7187 7.0196 22 6 1.6480 -0.1657 6.2678 23 6 2.4571 -1.3075 6.7392 24 6 3.2520 -1.3209 7.8430 25 6 3.8355 -2.6017 7.9072 26 6 3.3729 -3.2998 6.8515 27 8 2.5407 -2.5149 6.1480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1299 -0.7210 -1.2496 35 1 1.6765 -1.7489 -1.2494 36 1 1.6664 -0.1931 -5.6868 37 1 3.1300 -0.7217 1.2489 38 1 1.6767 -1.7490 1.2491 39 1 0.9938 0.7576 2.3565 40 1 0.2034 1.8618 4.0531 41 1 3.4062 -0.5070 8.5359 42 1 4.5229 -2.9571 8.6607 43 1 3.6295 -4.3209 6.6105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601579104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:13 Heat of formation + Delta-G solvation = 43.453476 kcal Electronic energy + Delta-G solvation = -26043.932071 eV Core-core repulsion = 22285.356292 eV Total energy + Delta-G solvation = -3758.575779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52899 -41.31782 -39.18928 -37.07890 -33.68144 -33.27924 -32.50544 -32.15653 -30.61882 -29.04600 -27.80462 -26.57140 -26.24455 -23.44895 -23.29283 -22.17749 -21.58183 -20.13719 -19.85932 -19.06999 -17.85361 -17.33407 -16.88790 -16.38874 -16.03652 -15.35624 -15.31619 -15.09541 -14.62650 -14.26032 -13.93793 -13.70013 -13.55479 -13.33218 -12.89449 -12.83238 -12.71753 -12.51071 -12.29657 -12.24286 -11.42486 -11.24918 -11.13156 -11.01284 -10.62015 -10.49647 -10.48076 -9.97234 -9.96088 -9.89573 -9.73839 -9.45067 -9.20128 -8.99563 -8.71765 -8.53615 -8.35348 -6.04656 -4.01848 0.99995 1.23582 1.99637 2.21857 2.65216 2.99974 3.32019 3.39995 3.44011 3.44499 3.52646 4.12254 4.31672 4.45860 4.73924 4.90695 4.93135 5.05786 5.15833 5.28317 5.42062 5.54172 5.56263 5.63545 5.75235 5.83336 6.01880 6.10059 6.11997 6.22746 6.31824 6.35184 6.50141 6.58405 6.65287 6.71594 6.90497 6.93758 7.00792 7.04251 7.16897 7.20679 7.37235 7.72906 7.81041 8.47359 8.52832 8.99223 9.58322 11.08070 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002945 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.892822 B = 9504.459047 C =10698.235235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.129 3.871 14 N -0.719 5.719 15 C 0.582 3.418 16 O -0.529 6.529 17 C -0.265 4.265 18 C 0.107 3.893 19 N -0.458 5.458 20 H 0.447 0.553 21 N -0.267 5.267 22 C 0.199 3.801 23 C 0.055 3.945 24 C -0.170 4.170 25 C -0.225 4.225 26 C -0.017 4.017 27 O -0.132 6.132 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.193 0.807 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 1.842 24.710 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 C 0.006 3.994 14 N -0.371 5.371 15 C 0.368 3.632 16 O -0.406 6.406 17 C -0.280 4.280 18 C -0.043 4.043 19 N -0.165 5.165 20 H 0.292 0.708 21 N -0.090 5.090 22 C 0.031 3.969 23 C 0.003 3.997 24 C -0.191 4.191 25 C -0.244 4.244 26 C -0.087 4.087 27 O -0.024 6.024 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.229 0.771 40 H 0.210 0.790 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.026 1.403 25.459 25.518 hybrid contribution 0.283 -0.178 -0.894 0.954 sum -0.743 1.225 24.565 24.607 Atomic orbital electron populations 1.21774 0.94848 1.01315 1.00619 1.20688 0.95769 0.95891 0.93994 1.21770 1.00535 0.95612 1.00618 1.19593 0.96325 0.95519 0.92577 1.21081 1.31794 1.13342 0.88631 0.90418 1.24998 0.95703 0.96752 0.95988 1.69902 1.45973 1.40605 0.97887 0.86860 0.81360 0.83909 0.77668 1.20367 1.21531 1.18938 1.21613 0.98923 0.96021 0.82839 1.45951 1.53685 1.32040 1.05453 1.17088 0.80391 0.83762 0.81967 1.90822 1.37788 1.25583 1.86428 1.21510 1.11159 1.01726 0.93650 1.23097 0.96250 0.96008 0.88909 1.45902 1.41484 1.25361 1.03742 0.70766 1.77412 1.13123 1.02697 1.15778 1.20111 0.94909 0.92133 0.89763 1.18471 1.02144 0.84800 0.94321 1.21762 1.00109 0.98963 0.98295 1.21717 1.06220 0.94663 1.01832 1.24249 0.94496 0.97204 0.92774 1.84286 1.52287 1.19961 1.45906 0.95134 0.90915 0.93350 0.93355 0.90909 0.95129 0.96329 0.96770 0.92806 0.91784 0.91758 0.77075 0.79039 0.83211 0.83165 0.77817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.12 8.05 37.15 0.30 -1.82 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.46 8.20 -34.44 -0.28 -13.74 16 6 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 13 C 0.13 2.13 4.56 -4.05 -0.02 2.11 16 14 N -0.72 -9.87 4.95 -61.45 -0.30 -10.18 16 15 C 0.58 8.93 7.81 -12.61 -0.10 8.84 16 16 O -0.53 -10.07 14.59 -15.18 -0.22 -10.30 16 17 C -0.27 -3.36 6.32 -102.91 -0.65 -4.01 16 18 C 0.11 0.85 11.50 -16.64 -0.19 0.66 16 19 N -0.46 -3.40 7.20 30.81 0.22 -3.18 16 20 H 0.45 1.49 8.96 -182.85 -1.64 -0.15 16 21 N -0.27 -3.05 12.67 34.50 0.44 -2.62 16 22 C 0.20 2.69 7.29 -80.68 -0.59 2.10 16 23 C 0.06 0.79 6.74 -36.53 -0.25 0.54 16 24 C -0.17 -2.03 10.85 -39.37 -0.43 -2.46 16 25 C -0.23 -2.34 10.89 -39.81 -0.43 -2.77 16 26 C -0.02 -0.19 12.08 29.50 0.36 0.17 16 27 O -0.13 -1.98 8.76 -15.82 -0.14 -2.12 16 28 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 29 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 34 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.39 4.28 5.11 -40.82 -0.21 4.07 16 40 H 0.19 0.73 7.48 -52.49 -0.39 0.34 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.21 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -35.33 356.05 -7.63 -42.96 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.84 Total: 1.40 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.25 Total: -11.79 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 1.13 Total: -42.24 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.36 Total: -12.42 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.33 -7.63 -42.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.410 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds