Wall clock time and date at job start Fri Apr 10 2020 23:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47043 * 2 1 4 4 C 1.52999 * 109.46587 * 239.99925 * 2 1 3 5 5 C 1.50704 * 109.47040 * 60.00489 * 4 2 1 6 6 H 1.08006 * 119.99976 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99887 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99799 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46973 * 90.00415 * 9 7 5 11 11 H 1.48500 * 109.46904 * 209.99989 * 9 7 5 12 12 H 1.48497 * 109.47341 * 330.00289 * 9 7 5 13 13 C 1.52994 * 109.46939 * 120.00470 * 2 1 3 14 14 N 1.46496 * 109.47367 * 299.99552 * 13 2 1 15 15 C 1.34780 * 120.00223 * 180.02562 * 14 13 2 16 16 O 1.21625 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.47216 * 119.99900 * 180.02562 * 15 14 13 18 18 C 1.37965 * 126.81645 * 0.19010 * 17 15 14 19 19 N 1.34138 * 107.93787 * 180.26387 * 18 17 15 20 20 H 0.97003 * 125.13541 * 179.72262 * 19 18 17 21 21 N 1.39769 * 109.72769 * 359.71810 * 19 18 17 22 22 C 1.31591 * 109.04583 * 0.02562 * 21 19 18 23 23 C 1.47664 * 126.53975 * 179.97438 * 22 21 19 24 24 C 1.36021 * 125.93712 * 324.73853 * 23 22 21 25 25 C 1.40894 * 106.73622 * 180.26342 * 24 23 22 26 26 C 1.34754 * 107.04346 * 359.97438 * 25 24 23 27 27 O 1.34298 * 108.68159 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 29 29 H 1.08998 * 109.47539 * 59.99099 * 1 2 3 30 30 H 1.08998 * 109.47817 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46613 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47489 * 300.00064 * 3 2 1 33 33 H 1.09000 * 109.47204 * 60.00988 * 3 2 1 34 34 H 1.09003 * 109.47377 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47861 * 300.00351 * 4 2 1 36 36 H 0.97001 * 119.99785 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47150 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.47509 * 60.00099 * 13 2 1 39 39 H 0.96995 * 120.00051 * 0.02562 * 14 13 2 40 40 H 1.07998 * 126.03216 * 359.97438 * 18 17 15 41 41 H 1.07997 * 126.62823 * 0.24315 * 24 23 22 42 42 H 1.08006 * 126.47929 * 180.02562 * 25 24 23 43 43 H 1.08003 * 125.66243 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4321 0.1383 -4.8058 9 14 2.9459 -1.9996 -3.9035 10 1 2.0881 -3.2109 -3.9491 11 1 3.7378 -1.9064 -5.1563 12 1 3.8663 -2.0882 -2.7415 13 6 2.0400 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4454 15 6 1.8777 -0.4911 3.6695 16 8 2.5769 -1.4800 3.7810 17 6 1.3866 0.2026 4.8715 18 6 0.5866 1.3259 4.9089 19 7 0.3740 1.6390 6.1958 20 1 -0.1542 2.3905 6.5076 21 7 1.0282 0.7187 7.0196 22 6 1.6480 -0.1657 6.2678 23 6 2.4571 -1.3075 6.7392 24 6 3.2520 -1.3209 7.8430 25 6 3.8355 -2.6017 7.9072 26 6 3.3729 -3.2998 6.8515 27 8 2.5407 -2.5149 6.1480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1299 -0.7210 -1.2496 35 1 1.6765 -1.7489 -1.2494 36 1 1.6664 -0.1931 -5.6868 37 1 3.1300 -0.7217 1.2489 38 1 1.6767 -1.7490 1.2491 39 1 0.9938 0.7576 2.3565 40 1 0.2034 1.8618 4.0531 41 1 3.4062 -0.5070 8.5359 42 1 4.5229 -2.9571 8.6607 43 1 3.6295 -4.3209 6.6105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601579104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:12 Heat of formation + Delta-G solvation = 19.133257 kcal Electronic energy + Delta-G solvation = -26044.986675 eV Core-core repulsion = 22285.356292 eV Total energy + Delta-G solvation = -3759.630383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.40833 -42.11267 -40.39187 -38.50324 -35.17191 -34.19335 -33.97050 -33.30869 -31.55173 -29.89880 -29.60981 -27.92987 -27.52919 -24.82288 -24.10344 -23.55611 -22.51486 -21.10689 -20.82993 -20.09401 -19.10465 -18.85162 -18.14868 -17.48102 -16.96307 -16.61884 -16.38119 -16.06201 -15.89898 -15.66414 -15.28252 -14.94686 -14.91211 -14.55158 -14.16646 -14.09527 -13.78592 -13.73333 -13.59062 -13.31682 -12.90200 -12.81418 -12.55157 -12.26666 -12.23902 -12.12403 -11.75688 -11.47147 -11.28689 -11.26003 -10.92372 -10.83616 -10.77485 -10.68637 -10.14527 -9.82190 -9.20842 -8.20924 -6.20306 0.11904 0.49451 1.20591 1.36643 1.39874 1.46716 1.49644 1.79819 2.18171 2.38368 2.40494 2.49704 3.14947 3.39631 3.53876 3.94991 4.08644 4.10754 4.11406 4.17249 4.21121 4.30617 4.35188 4.68675 4.74284 4.76699 4.86826 4.95396 5.00833 5.02183 5.07652 5.14509 5.18357 5.34270 5.41664 5.45024 5.54240 5.57791 5.60992 5.75189 5.79889 6.04292 6.24669 6.34376 6.40248 6.71967 6.86741 7.39316 7.42587 8.94543 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002945 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.892822 B = 9504.459047 C =10698.235235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.143 3.857 14 N -0.705 5.705 15 C 0.582 3.418 16 O -0.575 6.575 17 C -0.308 4.308 18 C 0.148 3.852 19 N -0.436 5.436 20 H 0.467 0.533 21 N -0.283 5.283 22 C 0.177 3.823 23 C 0.020 3.980 24 C -0.174 4.174 25 C -0.224 4.224 26 C -0.029 4.029 27 O -0.164 6.164 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.411 0.589 40 H 0.243 0.757 41 H 0.163 0.837 42 H 0.181 0.819 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 2.665 26.952 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.177 1.177 13 C 0.019 3.981 14 N -0.358 5.358 15 C 0.370 3.630 16 O -0.455 6.455 17 C -0.323 4.323 18 C -0.004 4.004 19 N -0.144 5.144 20 H 0.317 0.683 21 N -0.107 5.107 22 C 0.010 3.990 23 C -0.032 4.032 24 C -0.195 4.195 25 C -0.243 4.243 26 C -0.099 4.099 27 O -0.058 6.058 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.259 0.741 41 H 0.181 0.819 42 H 0.198 0.802 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.434 2.273 27.753 27.883 hybrid contribution 0.338 -0.341 -1.504 1.579 sum -1.096 1.932 26.249 26.343 Atomic orbital electron populations 1.21714 0.93690 1.01233 1.01495 1.20544 0.96630 0.96188 0.92370 1.21710 1.00151 0.94748 1.01502 1.19581 0.95874 0.95482 0.93349 1.21379 1.30069 1.12283 0.89962 0.92639 1.25798 0.97442 0.99757 0.95986 1.70034 1.48203 1.42649 0.98403 0.85943 0.79963 0.80613 0.77840 1.19798 1.21529 1.17706 1.21226 0.98094 0.95515 0.83302 1.45659 1.53691 1.32278 1.04180 1.17451 0.79541 0.83206 0.82775 1.90795 1.39939 1.27737 1.87065 1.21337 1.14524 1.04233 0.92214 1.23699 0.92967 0.93678 0.90052 1.45971 1.40143 1.24844 1.03478 0.68284 1.77353 1.13545 1.03194 1.16579 1.20296 0.95594 0.92548 0.90595 1.18952 1.03650 0.85182 0.95379 1.22083 0.99563 0.99986 0.97888 1.22098 1.06140 0.93883 1.02129 1.25011 0.93834 0.98284 0.92736 1.84255 1.53509 1.20786 1.47234 0.90751 0.93496 0.93952 0.93985 0.93487 0.90734 0.96912 0.97054 0.92913 0.93059 0.92980 0.75107 0.74106 0.81924 0.80213 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 2 C -0.06 -1.94 0.54 -52.19 -0.03 -1.97 16 3 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 4 C 0.00 -0.22 3.11 29.85 0.09 -0.13 16 5 C -0.50 -26.65 8.20 25.60 0.21 -26.44 16 6 H 0.06 3.16 5.92 -2.91 -0.02 3.15 16 7 C 0.01 0.36 5.47 84.65 0.46 0.82 16 8 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 9 Si 0.93 44.39 27.47 68.60 1.88 46.27 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 13 C 0.14 4.53 4.56 86.38 0.39 4.92 16 14 N -0.71 -17.54 4.95 -466.59 -2.31 -19.85 16 15 C 0.58 17.16 7.81 86.60 0.68 17.84 16 16 O -0.58 -22.16 14.59 15.43 0.23 -21.93 16 17 C -0.31 -7.20 6.32 -18.76 -0.12 -7.32 16 18 C 0.15 1.72 11.50 84.28 0.97 2.69 16 19 N -0.44 -4.86 7.20 -56.44 -0.41 -5.27 16 20 H 0.47 1.06 8.96 -213.53 -1.91 -0.85 16 21 N -0.28 -5.97 12.67 -44.77 -0.57 -6.54 16 22 C 0.18 4.66 7.29 43.90 0.32 4.98 16 23 C 0.02 0.59 6.74 24.25 0.16 0.75 16 24 C -0.17 -4.11 10.85 22.40 0.24 -3.87 16 25 C -0.22 -4.44 10.89 22.12 0.24 -4.20 16 26 C -0.03 -0.65 12.08 67.02 0.81 0.16 16 27 O -0.16 -5.06 8.76 13.14 0.12 -4.94 16 28 H 0.07 1.64 6.86 -2.39 -0.02 1.62 16 29 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.05 1.72 6.62 -2.39 -0.02 1.70 16 33 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 34 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 35 H 0.01 0.50 7.57 -2.39 -0.02 0.49 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 7.06 5.11 -92.71 -0.47 6.59 16 40 H 0.24 0.19 7.48 -2.91 -0.02 0.17 16 41 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.23 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -81.77 356.05 3.45 -78.31 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -1.38 Total: 10.18 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 5.59 Total: -18.34 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.98 Total: -89.55 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.34 Total: -26.88 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -81.77 3.45 -78.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.447 kcal (2) G-P(sol) polarization free energy of solvation -81.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds