Wall clock time and date at job start Fri Apr 10 2020 23:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.01804 * 2 1 4 4 C 1.53879 * 110.07167 * 121.41396 * 2 1 3 5 5 C 1.54268 * 106.59961 * 119.30568 * 4 2 1 6 6 C 1.54897 * 104.19307 * 23.61087 * 5 4 2 7 7 H 1.09002 * 110.91140 * 80.44717 * 6 5 4 8 8 N 1.46500 * 110.75456 * 203.74374 * 6 5 4 9 9 C 1.34783 * 119.99730 * 268.32935 * 8 6 5 10 10 O 1.21353 * 119.99727 * 359.97438 * 9 8 6 11 11 C 1.49363 * 119.99646 * 179.97438 * 9 8 6 12 12 O 1.21358 * 119.99991 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99875 * 179.97438 * 11 9 8 14 14 C 1.39115 * 120.00216 * 185.18143 * 13 11 9 15 15 C 1.39701 * 119.57917 * 174.82941 * 14 13 11 16 16 C 1.38660 * 119.49624 * 179.97438 * 15 14 13 17 17 C 1.38346 * 118.66406 * 0.02562 * 16 15 14 18 18 C 1.40591 * 119.14017 * 359.97438 * 17 16 15 19 19 C 1.41343 * 119.78522 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99872 * 5.13633 * 19 18 17 21 21 C 1.40031 * 119.99743 * 184.85069 * 19 18 17 22 22 N 1.30743 * 120.00141 * 355.14503 * 21 19 18 23 23 Si 1.86801 * 119.99640 * 175.14160 * 21 19 18 24 24 H 1.48499 * 109.46990 * 95.00214 * 23 21 19 25 25 H 1.48504 * 109.46908 * 215.00073 * 23 21 19 26 26 H 1.48495 * 109.47301 * 335.00032 * 23 21 19 27 27 N 1.31936 * 119.57851 * 355.09582 * 14 13 11 28 28 C 1.54261 * 110.03517 * 238.60419 * 2 1 3 29 29 H 1.08995 * 109.47621 * 181.39381 * 1 2 3 30 30 H 1.09005 * 109.47560 * 301.39997 * 1 2 3 31 31 H 1.09009 * 109.47332 * 61.39013 * 1 2 3 32 32 H 1.09004 * 110.03134 * 238.59124 * 4 2 1 33 33 H 1.09004 * 110.03212 * 0.02562 * 4 2 1 34 34 H 1.09000 * 110.48558 * 264.93646 * 5 4 2 35 35 H 1.08996 * 110.48382 * 142.29021 * 5 4 2 36 36 H 0.96999 * 120.00301 * 88.32900 * 8 6 5 37 37 H 0.97000 * 119.99785 * 5.17831 * 13 11 9 38 38 H 1.07997 * 120.25736 * 359.97438 * 15 14 13 39 39 H 1.07991 * 120.66680 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.42599 * 179.97438 * 17 16 15 41 41 H 0.97001 * 119.99633 * 180.02562 * 22 21 19 42 42 H 1.09001 * 110.48757 * 98.37854 * 28 2 1 43 43 H 1.09009 * 110.59752 * 335.79244 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0580 -0.7533 1.2335 5 6 2.8890 -1.9399 0.7029 6 6 3.3143 -1.4995 -0.7200 7 1 4.1720 -0.8281 -0.6793 8 7 3.6089 -2.6647 -1.5577 9 6 4.8662 -3.1455 -1.6253 10 8 5.7543 -2.6130 -0.9925 11 6 5.1664 -4.3338 -2.4789 12 8 4.2783 -4.8660 -3.1120 13 7 6.4237 -4.8144 -2.5469 14 6 6.7254 -5.8519 -3.4231 15 6 8.0506 -6.2704 -3.5661 16 6 8.3493 -7.3051 -4.4395 17 6 7.3173 -7.8945 -5.1478 18 6 6.0044 -7.4282 -4.9600 19 6 4.9398 -8.0202 -5.6769 20 1 5.1230 -8.8809 -6.3028 21 6 3.6464 -7.4941 -5.5709 22 7 3.4046 -6.5164 -4.7373 23 14 2.2665 -8.1892 -6.6208 24 1 1.5281 -9.2203 -5.8483 25 1 1.3365 -7.0963 -7.0027 26 1 2.8380 -8.8036 -7.8460 27 7 5.7571 -6.4246 -4.1125 28 6 2.0584 -0.7550 -1.2371 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3634 0.5354 0.8772 31 1 -0.3634 0.4921 -0.9022 32 1 2.6875 -0.0947 1.8320 33 1 1.2243 -1.1197 1.8325 34 1 2.2792 -2.8422 0.6566 35 1 3.7655 -2.1024 1.3300 36 1 2.8991 -3.0901 -2.0638 37 1 7.1183 -4.4367 -1.9849 38 1 8.8364 -5.7918 -3.0007 39 1 9.3671 -7.6435 -4.5650 40 1 7.5178 -8.7023 -5.8360 41 1 2.5085 -6.1523 -4.6636 42 1 2.3289 -0.0529 -2.0257 43 1 1.3155 -1.4659 -1.5988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890121702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:31:58 Heat of formation + Delta-G solvation = -26.291629 kcal Electronic energy + Delta-G solvation = -26235.886989 eV Core-core repulsion = 22474.286835 eV Total energy + Delta-G solvation = -3761.600154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.32336 -39.05673 -38.08441 -37.12143 -34.65008 -33.84279 -33.01009 -30.63907 -30.38080 -29.22747 -28.61299 -25.86607 -25.29629 -24.03149 -21.81998 -21.21309 -20.74349 -19.97268 -19.37955 -18.27321 -17.16095 -16.71354 -16.19373 -15.78471 -15.28130 -15.17013 -14.71306 -14.48363 -13.98110 -13.77459 -13.68911 -13.57648 -13.26670 -13.15530 -12.89711 -12.68452 -12.11297 -12.00933 -11.98130 -11.63747 -11.24787 -11.21503 -11.02155 -10.98751 -10.95962 -10.82877 -10.69815 -10.61087 -10.52543 -9.99276 -9.77564 -9.09134 -9.08229 -8.97511 -8.03543 -7.33098 -7.05780 -6.22900 -4.45239 1.92716 2.79236 2.82886 3.08551 3.13504 3.15977 3.23589 3.96148 4.01418 4.05825 4.33283 4.39768 4.59898 4.86341 4.98951 5.07578 5.11181 5.15886 5.25086 5.34866 5.35293 5.58485 5.61705 5.73068 5.85396 5.86674 5.95670 6.00488 6.05264 6.07138 6.16714 6.41954 6.47223 6.58072 6.75359 6.79553 7.15528 7.30680 7.50751 7.53112 7.76172 7.91094 8.05428 8.18783 8.37076 8.63163 8.93630 9.01699 10.14350 10.40974 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.003615 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.417795 B = 7743.700212 C = 9559.924498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.138 3.862 7 H 0.098 0.902 8 N -0.699 5.699 9 C 0.510 3.490 10 O -0.535 6.535 11 C 0.466 3.534 12 O -0.387 6.387 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.084 0.916 21 C 0.060 3.940 22 N -0.663 5.663 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.475 5.475 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.411 0.589 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 11.584 8.723 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.175 4.175 6 C 0.033 3.967 7 H 0.116 0.884 8 N -0.352 5.352 9 C 0.292 3.708 10 O -0.411 6.411 11 C 0.242 3.758 12 O -0.250 6.250 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.375 4.375 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.455 4.455 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.282 5.282 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.194 5.194 28 C -0.166 4.166 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.250 0.750 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.692 12.036 8.865 16.378 hybrid contribution 0.380 -0.518 -0.429 0.773 sum -6.312 11.518 8.436 15.610 Atomic orbital electron populations 1.21887 0.94748 1.01988 1.01601 1.21668 0.95899 0.99392 0.94348 0.90783 1.22185 0.99435 0.96826 0.97219 1.22764 1.00093 0.98532 0.96131 1.22047 0.98093 0.86862 0.89672 0.88376 1.45752 1.10187 1.31418 1.47822 1.20830 0.83016 0.85029 0.81965 1.90686 1.45660 1.59980 1.44817 1.20148 0.85043 0.85501 0.85099 1.91209 1.42890 1.53996 1.36877 1.42999 1.10529 1.34665 1.40550 1.18549 0.90072 0.87985 0.90372 1.20518 0.94287 1.09258 1.13388 1.20586 0.97171 0.94105 0.94164 1.21653 0.94408 1.07411 1.08887 1.18372 0.90767 0.87675 0.88591 1.19590 0.91489 1.11985 1.22426 0.89833 1.26162 0.99886 0.95139 0.95697 1.70312 1.20752 1.14335 1.22773 0.86473 0.80973 0.79368 0.80988 1.19712 1.20251 1.18657 1.68643 1.29303 1.11615 1.09854 1.22729 0.96606 0.99421 0.97846 0.92424 0.92698 0.92651 0.91637 0.91401 0.91015 0.91059 0.74971 0.75328 0.88722 0.88362 0.88374 0.91698 0.90874 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.84 37.15 0.33 -0.67 16 2 C -0.09 -0.72 3.50 -89.51 -0.31 -1.04 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.96 6.46 -25.61 -0.17 -1.13 16 5 C -0.14 -1.41 6.51 -25.07 -0.16 -1.57 16 6 C 0.14 1.56 3.27 -65.93 -0.22 1.35 16 7 H 0.10 1.21 7.55 -51.93 -0.39 0.82 16 8 N -0.70 -9.73 5.17 -52.33 -0.27 -10.00 16 9 C 0.51 8.78 7.89 -11.62 -0.09 8.69 16 10 O -0.53 -9.75 16.13 5.49 0.09 -9.66 16 11 C 0.47 9.64 7.84 -11.63 -0.09 9.55 16 12 O -0.39 -9.19 12.24 5.49 0.07 -9.13 16 13 N -0.64 -13.37 5.37 -11.83 -0.06 -13.44 16 14 C 0.37 9.04 7.43 -155.09 -1.15 7.89 16 15 C -0.35 -7.89 9.95 -38.88 -0.39 -8.28 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.45 9.83 -38.65 -0.38 -7.84 16 18 C 0.27 7.49 6.55 -85.00 -0.56 6.94 16 19 C -0.42 -11.41 9.13 -37.73 -0.34 -11.75 16 20 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 21 C 0.06 1.53 5.49 -17.34 -0.10 1.43 16 22 N -0.66 -17.58 9.01 55.55 0.50 -17.08 16 23 Si 0.90 18.67 29.56 -169.99 -5.03 13.64 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 N -0.47 -13.13 5.75 -10.28 -0.06 -13.19 16 28 C -0.13 -1.15 5.98 -25.08 -0.15 -1.30 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.41 5.59 8.04 -40.82 -0.33 5.26 16 37 H 0.41 7.39 8.18 -40.82 -0.33 7.06 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 41 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.68 7.73 -51.92 -0.40 0.28 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -31.06 357.99 -9.59 -40.66 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.05 Total: 11.74 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -4.18 Total: 1.06 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.11 Total: -53.71 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.79 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.06 -9.59 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890121702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.363 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds