Wall clock time and date at job start Fri Apr 10 2020 23:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 110.01804 * 2 1 4 4 C 1.53879 * 110.07167 * 121.41396 * 2 1 3 5 5 C 1.54268 * 106.59961 * 119.30568 * 4 2 1 6 6 C 1.54897 * 104.19307 * 23.61087 * 5 4 2 7 7 H 1.09002 * 110.91140 * 80.44717 * 6 5 4 8 8 N 1.46500 * 110.75456 * 203.74374 * 6 5 4 9 9 C 1.34783 * 119.99730 * 268.32935 * 8 6 5 10 10 O 1.21353 * 119.99727 * 359.97438 * 9 8 6 11 11 C 1.49363 * 119.99646 * 179.97438 * 9 8 6 12 12 O 1.21358 * 119.99991 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99875 * 179.97438 * 11 9 8 14 14 C 1.39115 * 120.00216 * 185.18143 * 13 11 9 15 15 C 1.39701 * 119.57917 * 174.82941 * 14 13 11 16 16 C 1.38660 * 119.49624 * 179.97438 * 15 14 13 17 17 C 1.38346 * 118.66406 * 0.02562 * 16 15 14 18 18 C 1.40591 * 119.14017 * 359.97438 * 17 16 15 19 19 C 1.41343 * 119.78522 * 179.97438 * 18 17 16 20 20 H 1.07992 * 119.99872 * 5.13633 * 19 18 17 21 21 C 1.40031 * 119.99743 * 184.85069 * 19 18 17 22 22 N 1.30743 * 120.00141 * 355.14503 * 21 19 18 23 23 Si 1.86801 * 119.99640 * 175.14160 * 21 19 18 24 24 H 1.48499 * 109.46990 * 95.00214 * 23 21 19 25 25 H 1.48504 * 109.46908 * 215.00073 * 23 21 19 26 26 H 1.48495 * 109.47301 * 335.00032 * 23 21 19 27 27 N 1.31936 * 119.57851 * 355.09582 * 14 13 11 28 28 C 1.54261 * 110.03517 * 238.60419 * 2 1 3 29 29 H 1.08995 * 109.47621 * 181.39381 * 1 2 3 30 30 H 1.09005 * 109.47560 * 301.39997 * 1 2 3 31 31 H 1.09009 * 109.47332 * 61.39013 * 1 2 3 32 32 H 1.09004 * 110.03134 * 238.59124 * 4 2 1 33 33 H 1.09004 * 110.03212 * 0.02562 * 4 2 1 34 34 H 1.09000 * 110.48558 * 264.93646 * 5 4 2 35 35 H 1.08996 * 110.48382 * 142.29021 * 5 4 2 36 36 H 0.96999 * 120.00301 * 88.32900 * 8 6 5 37 37 H 0.97000 * 119.99785 * 5.17831 * 13 11 9 38 38 H 1.07997 * 120.25736 * 359.97438 * 15 14 13 39 39 H 1.07991 * 120.66680 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.42599 * 179.97438 * 17 16 15 41 41 H 0.97001 * 119.99633 * 180.02562 * 22 21 19 42 42 H 1.09001 * 110.48757 * 98.37854 * 28 2 1 43 43 H 1.09009 * 110.59752 * 335.79244 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0580 -0.7533 1.2335 5 6 2.8890 -1.9399 0.7029 6 6 3.3143 -1.4995 -0.7200 7 1 4.1720 -0.8281 -0.6793 8 7 3.6089 -2.6647 -1.5577 9 6 4.8662 -3.1455 -1.6253 10 8 5.7543 -2.6130 -0.9925 11 6 5.1664 -4.3338 -2.4789 12 8 4.2783 -4.8660 -3.1120 13 7 6.4237 -4.8144 -2.5469 14 6 6.7254 -5.8519 -3.4231 15 6 8.0506 -6.2704 -3.5661 16 6 8.3493 -7.3051 -4.4395 17 6 7.3173 -7.8945 -5.1478 18 6 6.0044 -7.4282 -4.9600 19 6 4.9398 -8.0202 -5.6769 20 1 5.1230 -8.8809 -6.3028 21 6 3.6464 -7.4941 -5.5709 22 7 3.4046 -6.5164 -4.7373 23 14 2.2665 -8.1892 -6.6208 24 1 1.5281 -9.2203 -5.8483 25 1 1.3365 -7.0963 -7.0027 26 1 2.8380 -8.8036 -7.8460 27 7 5.7571 -6.4246 -4.1125 28 6 2.0584 -0.7550 -1.2371 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3634 0.5354 0.8772 31 1 -0.3634 0.4921 -0.9022 32 1 2.6875 -0.0947 1.8320 33 1 1.2243 -1.1197 1.8325 34 1 2.2792 -2.8422 0.6566 35 1 3.7655 -2.1024 1.3300 36 1 2.8991 -3.0901 -2.0638 37 1 7.1183 -4.4367 -1.9849 38 1 8.8364 -5.7918 -3.0007 39 1 9.3671 -7.6435 -4.5650 40 1 7.5178 -8.7023 -5.8360 41 1 2.5085 -6.1523 -4.6636 42 1 2.3289 -0.0529 -2.0257 43 1 1.3155 -1.4659 -1.5988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890121702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:31:57 Heat of formation + Delta-G solvation = -45.136976 kcal Electronic energy + Delta-G solvation = -26236.704184 eV Core-core repulsion = 22474.286835 eV Total energy + Delta-G solvation = -3762.417350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.77331 -40.49306 -39.38112 -38.68289 -36.24999 -35.28234 -34.71162 -32.27603 -31.44043 -31.05845 -29.47623 -27.65881 -26.44631 -25.23011 -23.54300 -22.91485 -21.74372 -21.25602 -20.40925 -19.91311 -18.84664 -18.19368 -17.55720 -16.86795 -16.65183 -16.48550 -16.42740 -16.28892 -15.59500 -15.19095 -15.05230 -14.69488 -14.57769 -14.29385 -13.99465 -13.84048 -13.77111 -13.37669 -12.90834 -12.81038 -12.73505 -12.66151 -12.57704 -12.42739 -12.30035 -11.95338 -11.77265 -11.66901 -11.58492 -11.51758 -11.28173 -10.91682 -10.61063 -10.22984 -9.93935 -9.20177 -8.92405 -8.09500 -6.42695 0.36990 1.02583 1.26944 1.40292 1.42881 1.53076 1.57332 2.27786 2.37362 2.67098 2.97765 3.45985 3.56659 3.66768 3.88817 4.00560 4.31834 4.33010 4.37761 4.40408 4.47366 4.62924 4.67045 4.72507 4.81515 4.86727 4.94046 4.96028 4.98557 5.03841 5.12240 5.14965 5.26514 5.29129 5.33527 5.41586 5.55692 5.63280 5.71086 5.89537 6.00316 6.16597 6.29668 6.54697 6.72070 6.85614 7.03609 7.28895 8.24675 8.55347 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.003615 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.417795 B = 7743.700212 C = 9559.924498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.084 0.916 4 C -0.113 4.113 5 C -0.135 4.135 6 C 0.132 3.868 7 H 0.091 0.909 8 N -0.683 5.683 9 C 0.520 3.480 10 O -0.546 6.546 11 C 0.459 3.541 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.347 3.653 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.236 3.764 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.015 3.985 22 N -0.695 5.695 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.271 1.271 26 H -0.258 1.258 27 N -0.506 5.506 28 C -0.123 4.123 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.416 0.584 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.274 0.726 42 H 0.077 0.923 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 12.594 9.239 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.151 4.151 5 C -0.174 4.174 6 C 0.028 3.972 7 H 0.109 0.891 8 N -0.335 5.335 9 C 0.300 3.700 10 O -0.424 6.424 11 C 0.237 3.763 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.368 4.368 16 C -0.057 4.057 17 C -0.344 4.344 18 C 0.111 3.889 19 C -0.492 4.492 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.314 5.314 23 Si 0.797 3.203 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.182 1.182 27 N -0.226 5.226 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.262 0.738 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.082 13.079 9.416 17.603 hybrid contribution 0.625 -0.784 -0.509 1.125 sum -6.456 12.295 8.906 16.498 Atomic orbital electron populations 1.21876 0.93924 1.01975 1.02301 1.21667 0.96518 0.99548 0.93145 0.89772 1.22171 0.99466 0.95918 0.97547 1.22735 0.99966 0.99480 0.95191 1.22307 0.98991 0.85787 0.90122 0.89139 1.45798 1.08915 1.31549 1.47272 1.20129 0.84071 0.84121 0.81664 1.90682 1.46191 1.60149 1.45397 1.20783 0.84544 0.86080 0.84871 1.91204 1.43717 1.55245 1.38303 1.42995 1.11281 1.33914 1.40111 1.19008 0.90760 0.88677 0.90689 1.20963 0.94355 1.08697 1.12808 1.21047 0.98584 0.93254 0.92827 1.21852 0.94229 1.08325 1.10037 1.18872 0.92335 0.88430 0.89288 1.19919 0.92674 1.12969 1.23653 0.89454 1.26992 1.01946 0.95310 0.96832 1.70461 1.21377 1.15460 1.24122 0.85288 0.77357 0.78599 0.79023 1.19145 1.19573 1.18181 1.68598 1.30955 1.12320 1.10742 1.22734 0.95297 0.99358 0.98708 0.92823 0.91679 0.92310 0.90826 0.90443 0.91481 0.92200 0.74675 0.73788 0.85283 0.84276 0.87331 0.91521 0.90393 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.84 71.98 0.64 -1.01 16 2 C -0.09 -1.18 3.50 -10.07 -0.04 -1.22 16 3 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.11 -1.61 6.46 31.32 0.20 -1.40 16 5 C -0.14 -2.67 6.51 31.67 0.21 -2.46 16 6 C 0.13 2.87 3.27 46.28 0.15 3.02 16 7 H 0.09 2.16 7.55 -2.39 -0.02 2.15 16 8 N -0.68 -18.93 5.17 -437.83 -2.26 -21.20 16 9 C 0.52 17.95 7.89 87.24 0.69 18.63 16 10 O -0.55 -19.71 16.13 -3.26 -0.05 -19.76 16 11 C 0.46 19.39 7.84 87.24 0.68 20.08 16 12 O -0.42 -20.64 12.24 -3.27 -0.04 -20.68 16 13 N -0.63 -26.64 5.37 -309.71 -1.66 -28.31 16 14 C 0.35 17.13 7.43 133.30 0.99 18.12 16 15 C -0.34 -15.01 9.95 22.72 0.23 -14.78 16 16 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 17 C -0.32 -16.02 9.83 22.87 0.22 -15.80 16 18 C 0.24 13.42 6.55 40.20 0.26 13.68 16 19 C -0.46 -25.59 9.13 23.47 0.21 -25.37 16 20 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 21 C 0.01 0.77 5.49 85.29 0.47 1.24 16 22 N -0.69 -38.05 9.01 21.84 0.20 -37.85 16 23 Si 0.98 39.05 29.56 68.60 2.03 41.08 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 25 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 N -0.51 -28.76 5.75 -186.43 -1.07 -29.83 16 28 C -0.12 -2.02 5.98 31.67 0.19 -1.83 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.08 0.98 7.67 -2.39 -0.02 0.96 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.42 11.31 8.04 -92.71 -0.74 10.56 16 37 H 0.42 15.02 8.18 -92.71 -0.76 14.27 16 38 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.14 4.82 8.06 -2.92 -0.02 4.80 16 40 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 41 H 0.27 13.82 8.29 -92.71 -0.77 13.05 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.28 7.73 -2.38 -0.02 1.26 16 Total: -1.00 -68.67 357.99 2.02 -66.65 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.45 Total: 40.21 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.34 Total: 9.68 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -4.80 Total: -117.19 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.09 Total: -40.44 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -68.67 2.02 -66.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890121702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.517 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds