Wall clock time and date at job start Fri Apr 10 2020 23:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 N 1.46495 * 109.46900 * 179.97438 * 3 2 1 5 5 C 1.46766 * 124.34778 * 269.95284 * 4 3 2 6 6 C 1.54487 * 105.47170 * 163.00847 * 5 4 3 7 7 H 1.08997 * 110.99740 * 267.28217 * 6 5 4 8 8 C 1.50699 * 110.97046 * 143.53457 * 6 5 4 9 9 O 1.21268 * 119.99636 * 354.56858 * 8 6 5 10 10 N 1.34773 * 119.99946 * 174.56859 * 8 6 5 11 11 C 1.37211 * 119.99787 * 4.82102 * 10 8 6 12 12 H 1.07995 * 120.00026 * 304.26056 * 11 10 8 13 13 C 1.38891 * 119.99927 * 124.26905 * 11 10 8 14 14 N 1.31414 * 120.00049 * 168.11573 * 13 11 10 15 15 Si 1.86798 * 120.00037 * 348.12153 * 13 11 10 16 16 H 1.48501 * 109.47493 * 95.74416 * 15 13 11 17 17 H 1.48507 * 109.47003 * 215.74426 * 15 13 11 18 18 H 1.48499 * 109.47060 * 335.73949 * 15 13 11 19 19 C 1.39431 * 119.99819 * 184.81913 * 10 8 6 20 20 C 1.39059 * 119.69398 * 185.00405 * 19 10 8 21 21 C 1.38383 * 119.09806 * 180.27524 * 20 19 10 22 22 C 1.38828 * 118.48890 * 359.50052 * 21 20 19 23 23 C 1.38147 * 119.31193 * 0.50199 * 22 21 20 24 24 N 1.31883 * 120.84920 * 359.73889 * 23 22 21 25 25 C 1.54624 * 101.76456 * 25.41218 * 6 5 4 26 26 C 1.34415 * 124.35170 * 89.97831 * 4 3 2 27 27 O 1.21285 * 124.93771 * 0.42049 * 26 4 3 28 28 H 1.09007 * 109.47211 * 59.99784 * 1 2 3 29 29 H 1.08997 * 109.47120 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47256 * 299.99863 * 1 2 3 31 31 H 1.09000 * 109.46618 * 240.00535 * 2 1 3 32 32 H 1.08995 * 109.46756 * 120.00154 * 2 1 3 33 33 H 1.09000 * 109.46619 * 60.00358 * 3 2 1 34 34 H 1.08994 * 109.47252 * 300.00456 * 3 2 1 35 35 H 1.08993 * 110.24861 * 44.00910 * 5 4 3 36 36 H 1.09000 * 110.24767 * 282.00604 * 5 4 3 37 37 H 0.96994 * 120.00178 * 179.97438 * 14 13 11 38 38 H 1.08000 * 120.45376 * 359.97438 * 20 19 10 39 39 H 1.08004 * 120.75638 * 179.72729 * 21 20 19 40 40 H 1.08003 * 120.34297 * 180.22099 * 22 21 20 41 41 H 1.08003 * 119.57079 * 179.77411 * 23 22 21 42 42 H 1.09012 * 110.48331 * 93.88101 * 25 6 5 43 43 H 1.08997 * 110.48654 * 216.39405 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3325 1.4437 1.2127 6 6 5.7409 1.0081 0.7506 7 1 5.8676 -0.0701 0.8475 8 6 6.8109 1.7450 1.5141 9 8 6.5049 2.6248 2.2905 10 7 8.1080 1.4261 1.3341 11 6 8.4615 0.5006 0.3848 12 1 8.0282 -0.4883 0.4070 13 6 9.3768 0.8357 -0.6047 14 7 9.8927 -0.1020 -1.3673 15 14 9.8747 2.6191 -0.8512 16 1 11.1346 2.8880 -0.1125 17 1 10.0843 2.8790 -2.2983 18 1 8.8012 3.5081 -0.3391 19 6 9.0905 2.0366 2.1125 20 6 10.4326 1.7821 1.8521 21 6 11.3973 2.3902 2.6360 22 6 10.9850 3.2434 3.6506 23 6 9.6342 3.4504 3.8530 24 7 8.7371 2.8530 3.0929 25 6 5.7301 1.4325 -0.7362 26 6 4.2639 1.4419 -1.1088 27 8 3.8355 1.4486 -2.2434 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.9378 0.7339 1.9396 36 1 4.3696 2.4444 1.6432 37 1 10.5316 0.1320 -2.0586 38 1 10.7180 1.1151 1.0521 39 1 12.4472 2.2081 2.4601 40 1 11.7126 3.7366 4.2781 41 1 9.3087 4.1105 4.6434 42 1 6.1595 2.4278 -0.8520 43 1 6.2754 0.7098 -1.3432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:43 Heat of formation + Delta-G solvation = -7.843934 kcal Electronic energy + Delta-G solvation = -27230.108855 eV Core-core repulsion = 23469.308653 eV Total energy + Delta-G solvation = -3760.800202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66055 -39.83918 -38.20169 -36.12045 -35.32852 -34.59090 -32.50562 -31.62811 -31.35234 -29.51317 -27.33015 -26.28054 -25.48949 -23.71808 -22.55047 -21.80106 -21.54183 -19.41877 -19.09608 -18.26261 -17.01497 -16.57092 -16.04416 -15.72928 -15.62169 -15.17395 -14.81747 -14.51619 -14.34683 -14.04442 -13.91350 -13.51597 -13.42120 -13.20313 -13.10171 -12.65642 -12.50280 -12.37518 -12.27699 -12.12751 -11.83042 -11.69981 -11.40336 -11.21822 -11.00856 -10.87212 -10.72570 -10.63532 -10.28075 -9.71772 -9.62032 -9.35356 -9.25995 -8.79006 -8.51932 -8.29866 -7.34925 -6.71173 -4.64445 1.74655 1.95146 2.88281 2.99574 3.12296 3.15376 3.19854 3.43859 3.78512 3.95043 4.46631 4.63090 4.72087 4.82432 4.91301 4.99071 5.15038 5.19074 5.33194 5.37483 5.38304 5.41050 5.57417 5.65352 5.69073 5.73410 5.80711 5.86675 5.90216 5.98532 6.03123 6.03477 6.18089 6.36241 6.42555 6.43728 6.62276 6.74895 6.83417 7.06439 7.32034 7.40400 7.83172 7.94552 8.44710 8.48311 8.69005 8.95694 9.37888 10.32787 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.004387 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.552392 B = 6381.214106 C = 7386.294291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.127 3.873 4 N -0.622 5.622 5 C 0.113 3.887 6 C -0.097 4.097 7 H 0.115 0.885 8 C 0.511 3.489 9 O -0.511 6.511 10 N -0.405 5.405 11 C -0.368 4.368 12 H 0.114 0.886 13 C 0.087 3.913 14 N -0.846 5.846 15 Si 0.858 3.142 16 H -0.255 1.255 17 H -0.280 1.280 18 H -0.262 1.262 19 C 0.358 3.642 20 C -0.202 4.202 21 C -0.061 4.061 22 C -0.232 4.232 23 C 0.117 3.883 24 N -0.489 5.489 25 C -0.129 4.129 26 C 0.521 3.479 27 O -0.539 6.539 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.282 0.718 38 H 0.152 0.848 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.099 0.901 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 1.480 5.413 8.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.005 3.995 4 N -0.356 5.356 5 C -0.010 4.010 6 C -0.119 4.119 7 H 0.133 0.867 8 C 0.299 3.701 9 O -0.385 6.385 10 N -0.118 5.118 11 C -0.495 4.495 12 H 0.131 0.869 13 C -0.124 4.124 14 N -0.479 5.479 15 Si 0.683 3.317 16 H -0.180 1.180 17 H -0.206 1.206 18 H -0.186 1.186 19 C 0.129 3.871 20 C -0.226 4.226 21 C -0.087 4.087 22 C -0.254 4.254 23 C -0.042 4.042 24 N -0.205 5.205 25 C -0.170 4.170 26 C 0.309 3.691 27 O -0.416 6.416 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.170 0.830 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.118 0.882 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.870 1.974 5.127 9.598 hybrid contribution 1.515 0.541 -0.377 1.652 sum -6.355 2.515 4.751 8.324 Atomic orbital electron populations 1.21690 0.95233 1.01857 1.01821 1.21929 0.95978 0.97382 1.02832 1.21377 0.78368 0.96867 1.02904 1.48357 1.05909 1.73711 1.07620 1.22074 0.88849 1.03472 0.86594 1.21880 0.92411 1.02408 0.95207 0.86744 1.20460 0.83746 0.83159 0.82732 1.90676 1.81707 1.29967 1.36175 1.41465 1.03056 1.36563 1.30744 1.18977 1.30493 0.94832 1.05165 0.86900 1.25463 0.94871 0.97754 0.94268 1.69665 1.26067 1.32918 1.19206 0.87241 0.81161 0.85076 0.78252 1.17986 1.20621 1.18614 1.19223 0.88212 0.90983 0.88696 1.21919 0.92186 1.04549 1.03919 1.21283 0.99220 0.94512 0.93690 1.21819 0.97365 1.04226 1.01986 1.22491 0.88955 0.96159 0.96565 1.67691 1.37782 1.09554 1.05461 1.22175 0.93418 1.05511 0.95849 1.21111 0.89492 0.74297 0.84177 1.90674 1.78886 1.50897 1.21181 0.92585 0.92519 0.92650 0.91459 0.91640 0.90513 0.90244 0.90381 0.89181 0.90779 0.83023 0.85662 0.85964 0.83605 0.88242 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.14 -1.56 6.26 -26.73 -0.17 -1.72 16 3 C 0.13 1.54 5.93 -4.04 -0.02 1.52 16 4 N -0.62 -9.36 2.93 -172.42 -0.51 -9.87 16 5 C 0.11 1.68 6.75 -3.12 -0.02 1.66 16 6 C -0.10 -1.70 2.70 -90.14 -0.24 -1.94 16 7 H 0.11 1.88 7.66 -51.93 -0.40 1.48 16 8 C 0.51 10.93 6.85 -10.99 -0.08 10.86 16 9 O -0.51 -11.80 13.78 5.57 0.08 -11.72 16 10 N -0.40 -9.27 2.11 -60.72 -0.13 -9.40 16 11 C -0.37 -8.59 7.31 -14.90 -0.11 -8.70 16 12 H 0.11 2.71 7.65 -52.49 -0.40 2.31 16 13 C 0.09 2.09 4.01 -17.49 -0.07 2.02 16 14 N -0.85 -21.08 13.96 55.49 0.77 -20.30 16 15 Si 0.86 19.57 24.34 -169.99 -4.14 15.43 16 16 H -0.26 -5.59 6.16 56.52 0.35 -5.24 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.36 8.22 5.99 -154.65 -0.93 7.29 16 20 C -0.20 -4.32 5.90 -39.22 -0.23 -4.56 16 21 C -0.06 -1.09 10.13 -39.31 -0.40 -1.49 16 22 C -0.23 -3.78 10.11 -39.40 -0.40 -4.18 16 23 C 0.12 2.12 11.18 -17.56 -0.20 1.93 16 24 N -0.49 -10.90 7.92 -12.34 -0.10 -10.99 16 25 C -0.13 -2.36 5.65 -26.75 -0.15 -2.51 16 26 C 0.52 9.38 8.02 -10.86 -0.09 9.29 16 27 O -0.54 -11.24 17.59 5.55 0.10 -11.15 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.44 6.90 -51.93 -0.36 1.08 16 37 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 38 H 0.15 3.41 4.78 -52.49 -0.25 3.16 16 39 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.15 2.14 8.06 -52.48 -0.42 1.71 16 42 H 0.10 1.92 7.89 -51.92 -0.41 1.51 16 43 H 0.12 2.31 7.91 -51.93 -0.41 1.90 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -29.65 349.89 -7.43 -37.08 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.06 Total: 7.08 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.73 Total: 8.57 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.04 Total: -50.56 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.14 Total: 15.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.65 -7.43 -37.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.239 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds