Wall clock time and date at job start Fri Apr 10 2020 23:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47205 * 2 1 4 4 N 1.46502 * 109.47064 * 179.97438 * 3 2 1 5 5 C 1.46768 * 124.34987 * 90.00209 * 4 3 2 6 6 C 1.54486 * 105.47131 * 197.01490 * 5 4 3 7 7 H 1.08996 * 110.96814 * 92.74167 * 6 5 4 8 8 C 1.50700 * 110.96593 * 216.46238 * 6 5 4 9 9 O 1.21271 * 120.00060 * 34.94773 * 8 6 5 10 10 N 1.34776 * 119.99907 * 214.94224 * 8 6 5 11 11 C 1.37213 * 119.99745 * 6.92608 * 10 8 6 12 12 H 1.08003 * 120.00275 * 35.20532 * 11 10 8 13 13 C 1.38893 * 119.99652 * 215.20085 * 11 10 8 14 14 N 1.31410 * 120.00160 * 16.96527 * 13 11 10 15 15 Si 1.86799 * 119.99980 * 196.95849 * 13 11 10 16 16 H 1.48504 * 109.46967 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47365 * 120.00266 * 15 13 11 18 18 H 1.48502 * 109.47198 * 240.00623 * 15 13 11 19 19 C 1.39425 * 120.00064 * 186.91953 * 10 8 6 20 20 C 1.39067 * 119.69696 * 15.92051 * 19 10 8 21 21 C 1.38373 * 119.09812 * 179.97438 * 20 19 10 22 22 C 1.38826 * 118.49573 * 359.97438 * 21 20 19 23 23 C 1.38142 * 119.30866 * 359.97438 * 22 21 20 24 24 N 1.31880 * 120.85488 * 359.75191 * 23 22 21 25 25 C 1.54626 * 101.76538 * 334.58302 * 6 5 4 26 26 C 1.34420 * 124.34842 * 269.69674 * 4 3 2 27 27 O 1.21278 * 124.94330 * 359.57679 * 26 4 3 28 28 H 1.08999 * 109.46894 * 60.00676 * 1 2 3 29 29 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47374 * 299.99997 * 1 2 3 31 31 H 1.09001 * 109.47566 * 239.99497 * 2 1 3 32 32 H 1.09002 * 109.47194 * 120.00023 * 2 1 3 33 33 H 1.09006 * 109.47274 * 299.99380 * 3 2 1 34 34 H 1.08998 * 109.47368 * 60.00086 * 3 2 1 35 35 H 1.08996 * 110.24298 * 316.01233 * 5 4 3 36 36 H 1.08995 * 110.24489 * 78.01402 * 5 4 3 37 37 H 0.96999 * 120.00032 * 184.58191 * 14 13 11 38 38 H 1.08003 * 120.44747 * 359.94477 * 20 19 10 39 39 H 1.08009 * 120.75244 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.34774 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.57791 * 180.02562 * 23 22 21 42 42 H 1.08999 * 110.49050 * 143.47717 * 25 6 5 43 43 H 1.09003 * 110.48658 * 266.12237 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3336 1.4423 -1.2108 6 6 5.7414 1.0066 -0.7470 7 1 5.8675 -0.0717 -0.8435 8 6 6.8123 1.7425 -1.5104 9 8 6.6352 2.8944 -1.8455 10 7 7.9670 1.1204 -1.8204 11 6 8.1130 -0.2205 -1.5685 12 1 7.2686 -0.8853 -1.6760 13 6 9.3467 -0.7229 -1.1753 14 7 10.2742 0.0914 -0.7241 15 14 9.6875 -2.5561 -1.2877 16 1 8.4894 -3.2503 -1.8244 17 1 10.8416 -2.7905 -2.1923 18 1 10.0025 -3.0848 0.0638 19 6 9.0131 1.8393 -2.3973 20 6 9.0025 3.2291 -2.3497 21 6 10.0472 3.9301 -2.9257 22 6 11.0709 3.2142 -3.5314 23 6 11.0172 1.8339 -3.5407 24 7 10.0112 1.1924 -2.9788 25 6 5.7295 1.4324 0.7394 26 6 4.2630 1.4484 1.1107 27 8 3.8337 1.4620 2.2449 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 3.9393 0.7320 -1.9374 36 1 4.3713 2.4425 -1.6421 37 1 11.1574 -0.2493 -0.5122 38 1 8.1896 3.7541 -1.8701 39 1 10.0658 5.0099 -2.9046 40 1 11.9011 3.7311 -3.9899 41 1 11.8114 1.2726 -4.0103 42 1 6.2721 0.7089 1.3479 43 1 6.1591 2.4276 0.8546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892477256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:46 Heat of formation + Delta-G solvation = -24.198572 kcal Electronic energy + Delta-G solvation = -27007.734791 eV Core-core repulsion = 23246.225399 eV Total energy + Delta-G solvation = -3761.509392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.10372 -41.15147 -39.61942 -37.50622 -36.82698 -35.68947 -33.68596 -32.83520 -32.57769 -30.87295 -28.73611 -27.32692 -27.01294 -25.05048 -24.02839 -22.99087 -22.68311 -21.00801 -20.47239 -19.62306 -18.70503 -17.79947 -17.21459 -17.03370 -16.91607 -16.59982 -16.45834 -15.86166 -15.54806 -15.43471 -15.23820 -14.79685 -14.65484 -14.62213 -14.25537 -14.01707 -13.79210 -13.66115 -13.37696 -13.07516 -13.05047 -12.89009 -12.79369 -12.64178 -12.35962 -12.29083 -12.14204 -11.95919 -11.62969 -11.31483 -11.01197 -10.77257 -10.40159 -10.24347 -9.81220 -9.74094 -8.93326 -8.22892 -6.11584 0.47480 0.75969 1.41373 1.45805 1.51291 1.60460 1.80826 1.95957 2.25115 2.57513 3.10458 3.31138 3.43038 3.67814 3.85953 3.89882 4.03090 4.06816 4.07260 4.19693 4.33684 4.36883 4.50525 4.56050 4.57290 4.59790 4.62524 4.69341 4.80348 4.83117 4.92060 5.01014 5.17675 5.18210 5.21219 5.35019 5.36435 5.49571 5.58374 5.59435 5.72692 5.99179 6.10444 6.44508 7.00764 7.05783 7.15720 7.67314 7.84646 8.76023 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.004228 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.239752 B = 6620.919004 C = 7739.018171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.609 5.609 5 C 0.123 3.877 6 C -0.097 4.097 7 H 0.124 0.876 8 C 0.491 3.509 9 O -0.580 6.580 10 N -0.382 5.382 11 C -0.380 4.380 12 H 0.112 0.888 13 C 0.045 3.955 14 N -0.863 5.863 15 Si 0.975 3.025 16 H -0.253 1.253 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.359 3.641 20 C -0.234 4.234 21 C -0.072 4.072 22 C -0.219 4.219 23 C 0.097 3.903 24 N -0.490 5.490 25 C -0.129 4.129 26 C 0.523 3.477 27 O -0.572 6.572 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.107 0.893 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 0.900 -3.959 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.341 5.341 5 C 0.000 4.000 6 C -0.118 4.118 7 H 0.142 0.858 8 C 0.282 3.718 9 O -0.465 6.465 10 N -0.091 5.091 11 C -0.506 4.506 12 H 0.129 0.871 13 C -0.163 4.163 14 N -0.496 5.496 15 Si 0.799 3.201 16 H -0.177 1.177 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.131 3.869 20 C -0.256 4.256 21 C -0.098 4.098 22 C -0.240 4.240 23 C -0.062 4.062 24 N -0.204 5.204 25 C -0.169 4.169 26 C 0.312 3.688 27 O -0.453 6.453 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.126 0.874 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.785 0.518 -3.388 10.368 hybrid contribution 0.987 0.001 0.232 1.014 sum -8.798 0.519 -3.156 9.361 Atomic orbital electron populations 1.21662 0.93329 1.02609 1.02574 1.21875 0.97579 0.96113 1.02066 1.21685 0.76233 0.98091 1.04018 1.48383 1.07153 1.71955 1.06632 1.22073 0.87239 1.03649 0.86990 1.21946 0.92910 1.02987 0.93971 0.85788 1.20603 0.84245 0.86097 0.80847 1.90416 1.80699 1.18512 1.56834 1.41351 1.10586 1.09736 1.47412 1.19659 0.99593 0.81703 1.49647 0.87055 1.25826 0.95707 1.02855 0.91959 1.69975 1.04461 1.38276 1.36882 0.85184 0.78886 0.78674 0.77335 1.17687 1.21125 1.20981 1.18730 0.89092 0.88027 0.91059 1.22629 1.03044 0.93916 1.06037 1.21651 0.92222 1.00971 0.94990 1.22120 1.01301 0.95127 1.05473 1.22828 0.95469 0.92800 0.95138 1.67097 1.02328 1.41482 1.09537 1.22097 0.94475 1.04616 0.95740 1.20860 0.89350 0.74312 0.84287 1.90657 1.79181 1.52952 1.22499 0.91075 0.91832 0.92668 0.90892 0.93753 0.87623 0.90930 0.87280 0.89870 0.92405 0.83455 0.82960 0.82497 0.82186 0.87446 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 71.98 0.71 -1.33 16 2 C -0.14 -2.63 6.26 30.59 0.19 -2.44 16 3 C 0.12 2.55 5.94 86.38 0.51 3.07 16 4 N -0.61 -16.69 2.93 -817.96 -2.40 -19.09 16 5 C 0.12 3.33 6.87 86.83 0.60 3.93 16 6 C -0.10 -3.27 3.12 -10.48 -0.03 -3.30 16 7 H 0.12 4.09 6.01 -2.39 -0.01 4.07 16 8 C 0.49 20.94 6.47 87.66 0.57 21.50 16 9 O -0.58 -25.96 12.65 -3.00 -0.04 -26.00 16 10 N -0.38 -18.43 2.78 -464.37 -1.29 -19.72 16 11 C -0.38 -18.22 8.33 84.01 0.70 -17.52 16 12 H 0.11 4.85 6.49 -2.91 -0.02 4.83 16 13 C 0.04 2.19 4.40 84.91 0.37 2.57 16 14 N -0.86 -45.71 11.16 21.65 0.24 -45.46 16 15 Si 0.97 39.45 29.59 68.60 2.03 41.48 16 16 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 17 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 19 C 0.36 17.80 6.11 132.90 0.81 18.61 16 20 C -0.23 -10.54 8.86 22.50 0.20 -10.34 16 21 C -0.07 -2.66 10.17 22.44 0.23 -2.43 16 22 C -0.22 -7.49 10.11 22.39 0.23 -7.27 16 23 C 0.10 3.88 11.18 84.66 0.95 4.82 16 24 N -0.49 -23.78 7.30 -192.95 -1.41 -25.19 16 25 C -0.13 -4.43 6.41 30.59 0.20 -4.23 16 26 C 0.52 17.79 8.02 87.90 0.71 18.49 16 27 O -0.57 -22.92 17.58 -3.02 -0.05 -22.97 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.07 1.68 7.91 -2.39 -0.02 1.66 16 35 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.41 7.04 -2.39 -0.02 2.39 16 37 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 38 H 0.15 6.86 5.20 -7.03 -0.04 6.83 16 39 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 41 H 0.16 5.33 8.06 -2.91 -0.02 5.30 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.09 3.45 7.89 -2.39 -0.02 3.43 16 Total: -1.00 -66.43 355.63 5.02 -61.41 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 1.00 Total: 31.41 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.94 Total: 24.13 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -4.86 Total: -109.46 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.09 Total: -48.97 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -66.43 5.02 -61.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.210 kcal (2) G-P(sol) polarization free energy of solvation -66.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds