Wall clock time and date at job start Fri Apr 10 2020 23:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00428 * 2 1 3 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00060 * 5 4 2 7 7 C 1.53006 * 109.46974 * 300.00168 * 6 5 4 8 8 H 1.09000 * 109.46866 * 299.99774 * 7 6 5 9 9 N 1.46505 * 109.46997 * 180.02562 * 7 6 5 10 10 C 1.34771 * 120.00080 * 84.99676 * 9 7 6 11 11 O 1.21288 * 119.99982 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00086 * 180.02562 * 10 9 7 13 13 S 1.81396 * 109.47077 * 180.02562 * 12 10 9 14 14 O 1.42101 * 108.58180 * 294.48663 * 13 12 10 15 15 O 1.42099 * 108.58120 * 65.51429 * 13 12 10 16 16 C 1.81408 * 101.92133 * 179.97438 * 13 12 10 17 17 C 1.50697 * 109.47019 * 179.97438 * 16 13 12 18 18 H 1.07995 * 120.00146 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99669 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46998 * 89.99834 * 21 19 17 23 23 H 1.48498 * 109.47177 * 209.99931 * 21 19 17 24 24 H 1.48499 * 109.47116 * 329.99967 * 21 19 17 25 25 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 26 26 H 1.09002 * 109.47103 * 299.99915 * 25 2 1 27 27 C 1.52997 * 109.47482 * 60.00162 * 25 2 1 28 28 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 29 29 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 32 32 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 33 33 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 35 35 H 1.09000 * 109.47140 * 59.99774 * 6 5 4 36 36 H 1.09001 * 109.47375 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00023 * 265.00087 * 9 7 6 38 38 H 1.08995 * 109.46914 * 299.99869 * 12 10 9 39 39 H 1.08998 * 109.47113 * 60.00185 * 12 10 9 40 40 H 1.09001 * 109.46907 * 300.00359 * 16 13 12 41 41 H 1.09005 * 109.46798 * 60.00312 * 16 13 12 42 42 H 0.97001 * 120.00442 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47153 * 59.99783 * 27 25 2 44 44 H 1.09001 * 109.46832 * 299.99974 * 27 25 2 45 45 H 1.09004 * 109.47261 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5704 -0.7204 1.2489 8 1 3.9334 0.3074 1.2487 9 7 4.0598 -1.4104 2.4450 10 6 5.2817 -1.1236 2.9359 11 8 5.9761 -0.2939 2.3877 12 6 5.7853 -1.8338 4.1660 13 16 7.4476 -1.2327 4.5733 14 8 8.3348 -1.6131 3.5305 15 8 7.3562 0.1368 4.9415 16 6 7.8447 -2.2031 6.0537 17 6 9.2200 -1.8305 6.5445 18 1 9.7972 -1.0843 6.0188 19 6 9.7413 -2.4424 7.6648 20 7 9.0382 -3.3507 8.3052 21 14 11.4456 -1.9801 8.2736 22 1 11.3384 -0.8583 9.2408 23 1 12.0674 -3.1517 8.9414 24 1 12.2861 -1.5627 7.1227 25 6 2.0400 -0.7213 1.2491 26 1 1.6767 -0.2075 2.1392 27 6 1.5301 -2.1638 1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.9333 -1.2348 -2.1394 34 1 3.9330 0.3072 -1.2498 35 1 3.7175 -2.4693 -0.0003 36 1 5.1705 -1.4416 -0.0009 37 1 3.5043 -2.0737 2.8837 38 1 5.1130 -1.6356 5.0007 39 1 5.8228 -2.9065 3.9764 40 1 7.1114 -1.9940 6.8326 41 1 7.8221 -3.2650 5.8088 42 1 9.4050 -3.7814 9.0931 43 1 1.8934 -2.6776 0.3591 44 1 0.4401 -2.1638 1.2491 45 1 1.8938 -2.6778 2.1388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:44 Heat of formation + Delta-G solvation = -136.946294 kcal Electronic energy + Delta-G solvation = -25206.574071 eV Core-core repulsion = 21543.326770 eV Total energy + Delta-G solvation = -3663.247300 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59691 -38.86952 -35.92329 -34.98583 -34.67860 -33.34093 -32.91027 -31.39292 -29.68934 -28.98640 -27.41843 -26.04873 -23.58563 -22.53230 -21.92898 -20.46022 -18.90997 -17.95112 -17.47367 -16.87490 -16.42341 -15.81428 -15.78374 -15.43736 -14.96545 -14.88781 -14.75045 -14.41124 -14.18631 -13.87382 -13.62652 -13.24142 -12.91616 -12.62598 -12.49120 -12.43119 -12.29455 -12.13060 -11.89221 -11.69741 -11.44440 -11.37704 -11.03417 -11.02997 -10.98122 -10.87955 -10.78102 -10.60452 -10.45998 -10.41781 -10.34717 -10.01972 -9.76760 -9.16648 -9.08334 -8.70419 -6.33259 -4.42107 0.88616 2.55287 2.99963 3.23809 3.28883 3.36283 3.82869 4.23912 4.27727 4.33133 4.39397 4.50187 4.68803 4.77410 4.82579 4.93983 4.96928 4.99348 5.04045 5.12599 5.16718 5.27999 5.34705 5.39130 5.39785 5.47038 5.47976 5.56704 5.61704 5.67352 5.76272 5.80751 5.89526 5.97766 6.03358 6.08391 6.23915 6.37832 6.62652 6.66707 7.29802 7.49793 7.74895 8.08545 8.60132 9.24986 10.78782 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.002648 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.443703 B =10570.741816 C =10843.642983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.135 4.135 7 C 0.147 3.853 8 H 0.091 0.909 9 N -0.722 5.722 10 C 0.544 3.456 11 O -0.525 6.525 12 C -0.677 4.677 13 S 2.424 3.576 14 O -0.942 6.942 15 O -0.943 6.943 16 C -0.407 4.407 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.883 5.883 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.266 1.266 25 C -0.093 4.093 26 H 0.077 0.923 27 C -0.156 4.156 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.268 0.732 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.727 0.210 -14.610 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.173 4.173 7 C 0.043 3.957 8 H 0.109 0.891 9 N -0.375 5.375 10 C 0.329 3.671 11 O -0.401 6.401 12 C -0.800 4.800 13 S 2.604 3.396 14 O -0.939 6.939 15 O -0.940 6.940 16 C -0.542 4.542 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.112 4.112 26 H 0.095 0.905 27 C -0.213 4.213 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.818 1.328 -15.363 24.329 hybrid contribution -0.156 -0.969 1.119 1.489 sum -18.974 0.359 -14.244 23.728 Atomic orbital electron populations 1.21877 0.94958 1.01996 1.01712 1.21093 0.95605 0.99585 0.94067 0.90853 1.21672 0.95619 1.00892 0.97270 1.21487 0.95333 1.01187 0.97487 1.21992 1.01740 0.99689 0.93898 1.21045 0.93072 0.97609 0.84008 0.89118 1.46020 1.17566 1.43936 1.29947 1.19441 0.81827 0.81924 0.83861 1.90845 1.55727 1.33223 1.60328 1.31167 1.30738 1.13122 1.04958 1.08476 0.74726 0.77500 0.78904 1.93466 1.59104 1.84582 1.56786 1.93465 1.84914 1.31432 1.84162 1.27620 1.06684 1.08836 1.11049 1.20372 0.98060 1.24966 1.13287 0.90839 1.24931 0.98536 0.94091 0.95566 1.69940 1.37784 1.25295 1.18953 0.86338 0.82734 0.78334 0.79387 1.19880 1.20663 1.18987 1.21395 0.93681 0.97236 0.98929 0.90477 1.22033 1.01378 0.95798 1.02096 0.92652 0.92659 0.92301 0.91562 0.91938 0.91646 0.91637 0.91411 0.91018 0.76335 0.82872 0.82866 0.89661 0.89656 0.92224 0.91568 0.91948 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.84 37.16 0.33 -0.52 16 2 C -0.08 -0.58 2.49 -90.62 -0.23 -0.81 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.12 -0.79 4.93 -26.73 -0.13 -0.92 16 5 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 6 C -0.13 -1.38 5.22 -26.73 -0.14 -1.52 16 7 C 0.15 1.57 2.15 -67.90 -0.15 1.42 16 8 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 9 N -0.72 -8.37 5.00 -53.78 -0.27 -8.64 16 10 C 0.54 8.84 7.81 -10.99 -0.09 8.75 16 11 O -0.53 -10.88 15.29 2.55 0.04 -10.85 16 12 C -0.68 -10.06 6.29 36.01 0.23 -9.83 16 13 S 2.42 52.51 3.88 -107.50 -0.42 52.09 16 14 O -0.94 -23.47 17.95 -59.53 -1.07 -24.53 16 15 O -0.94 -23.49 17.95 -59.52 -1.07 -24.56 16 16 C -0.41 -9.56 5.56 36.00 0.20 -9.36 16 17 C -0.53 -14.68 9.13 -34.44 -0.31 -15.00 16 18 H 0.07 2.05 7.71 -52.49 -0.40 1.65 16 19 C 0.07 2.05 5.46 -17.82 -0.10 1.96 16 20 N -0.88 -24.69 13.29 55.43 0.74 -23.96 16 21 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.09 -0.72 2.41 -90.60 -0.22 -0.94 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 C -0.16 -0.99 7.98 37.16 0.30 -0.69 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 31 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.40 6.87 -40.82 -0.28 3.11 16 38 H 0.15 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.15 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 41 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 0.43 4.81 -51.93 -0.25 0.18 16 44 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 45 H 0.05 0.31 6.51 -51.93 -0.34 -0.02 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -36.60 363.60 -9.26 -45.86 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.21 Total: 1.56 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -0.47 Total: -28.60 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.47 Total: -32.60 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -2.10 Total: -59.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.42 Total: 52.09 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.60 -9.26 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.082 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds