Wall clock time and date at job start Fri Apr 10 2020 23:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46550 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00428 * 2 1 3 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00060 * 5 4 2 7 7 C 1.53006 * 109.46974 * 300.00168 * 6 5 4 8 8 H 1.09000 * 109.46866 * 299.99774 * 7 6 5 9 9 N 1.46505 * 109.46997 * 180.02562 * 7 6 5 10 10 C 1.34771 * 120.00080 * 84.99676 * 9 7 6 11 11 O 1.21288 * 119.99982 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00086 * 180.02562 * 10 9 7 13 13 S 1.81396 * 109.47077 * 180.02562 * 12 10 9 14 14 O 1.42101 * 108.58180 * 294.48663 * 13 12 10 15 15 O 1.42099 * 108.58120 * 65.51429 * 13 12 10 16 16 C 1.81408 * 101.92133 * 179.97438 * 13 12 10 17 17 C 1.50697 * 109.47019 * 179.97438 * 16 13 12 18 18 H 1.07995 * 120.00146 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99669 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00161 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99884 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46998 * 89.99834 * 21 19 17 23 23 H 1.48498 * 109.47177 * 209.99931 * 21 19 17 24 24 H 1.48499 * 109.47116 * 329.99967 * 21 19 17 25 25 C 1.52992 * 109.47106 * 120.00405 * 2 1 3 26 26 H 1.09002 * 109.47103 * 299.99915 * 25 2 1 27 27 C 1.52997 * 109.47482 * 60.00162 * 25 2 1 28 28 H 1.09002 * 109.47596 * 299.99664 * 1 2 3 29 29 H 1.08996 * 109.47407 * 60.00059 * 1 2 3 30 30 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 32 32 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 33 33 H 1.09002 * 109.47067 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 35 35 H 1.09000 * 109.47140 * 59.99774 * 6 5 4 36 36 H 1.09001 * 109.47375 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00023 * 265.00087 * 9 7 6 38 38 H 1.08995 * 109.46914 * 299.99869 * 12 10 9 39 39 H 1.08998 * 109.47113 * 60.00185 * 12 10 9 40 40 H 1.09001 * 109.46907 * 300.00359 * 16 13 12 41 41 H 1.09005 * 109.46798 * 60.00312 * 16 13 12 42 42 H 0.97001 * 120.00442 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47153 * 59.99783 * 27 25 2 44 44 H 1.09001 * 109.46832 * 299.99974 * 27 25 2 45 45 H 1.09004 * 109.47261 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5704 -0.7204 1.2489 8 1 3.9334 0.3074 1.2487 9 7 4.0598 -1.4104 2.4450 10 6 5.2817 -1.1236 2.9359 11 8 5.9761 -0.2939 2.3877 12 6 5.7853 -1.8338 4.1660 13 16 7.4476 -1.2327 4.5733 14 8 8.3348 -1.6131 3.5305 15 8 7.3562 0.1368 4.9415 16 6 7.8447 -2.2031 6.0537 17 6 9.2200 -1.8305 6.5445 18 1 9.7972 -1.0843 6.0188 19 6 9.7413 -2.4424 7.6648 20 7 9.0382 -3.3507 8.3052 21 14 11.4456 -1.9801 8.2736 22 1 11.3384 -0.8583 9.2408 23 1 12.0674 -3.1517 8.9414 24 1 12.2861 -1.5627 7.1227 25 6 2.0400 -0.7213 1.2491 26 1 1.6767 -0.2075 2.1392 27 6 1.5301 -2.1638 1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.9333 -1.2348 -2.1394 34 1 3.9330 0.3072 -1.2498 35 1 3.7175 -2.4693 -0.0003 36 1 5.1705 -1.4416 -0.0009 37 1 3.5043 -2.0737 2.8837 38 1 5.1130 -1.6356 5.0007 39 1 5.8228 -2.9065 3.9764 40 1 7.1114 -1.9940 6.8326 41 1 7.8221 -3.2650 5.8088 42 1 9.4050 -3.7814 9.0931 43 1 1.8934 -2.6776 0.3591 44 1 0.4401 -2.1638 1.2491 45 1 1.8938 -2.6778 2.1388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:43 Heat of formation + Delta-G solvation = -164.494632 kcal Electronic energy + Delta-G solvation = -25207.768656 eV Core-core repulsion = 21543.326770 eV Total energy + Delta-G solvation = -3664.441886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55464 -39.88731 -37.77706 -36.79708 -35.73621 -35.38001 -33.58623 -32.41266 -31.06849 -30.53623 -28.10777 -26.63526 -25.56771 -23.34773 -22.73627 -21.51250 -19.83674 -19.49450 -18.97182 -18.45733 -17.71056 -17.24964 -17.14298 -16.67781 -16.27346 -16.16585 -16.01950 -15.66056 -15.17676 -14.87351 -14.56192 -14.45490 -14.02544 -13.97624 -13.61835 -13.46223 -13.38603 -13.23118 -12.92386 -12.85830 -12.79606 -12.71668 -12.53986 -12.53170 -12.32810 -12.17314 -11.97650 -11.76623 -11.65714 -11.53597 -11.19469 -11.11937 -11.04057 -10.88273 -10.76124 -10.18823 -8.41025 -6.55984 -0.81819 1.29575 1.38405 1.38947 1.51364 1.86513 2.19651 2.33258 2.93097 3.02953 3.28028 3.50919 3.62534 3.68892 3.86302 4.00702 4.09705 4.16543 4.25192 4.33387 4.37217 4.44215 4.54920 4.71468 4.73444 4.77032 4.79526 4.81849 4.93595 5.00199 5.03505 5.10619 5.12676 5.21325 5.28066 5.34035 5.38402 5.40984 5.44504 5.48814 5.67319 5.75645 6.25631 6.52323 6.97711 7.14048 8.71327 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.002648 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.443703 B =10570.741816 C =10843.642983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.142 3.858 8 H 0.061 0.939 9 N -0.697 5.697 10 C 0.533 3.467 11 O -0.581 6.581 12 C -0.646 4.646 13 S 2.430 3.570 14 O -0.987 6.987 15 O -0.988 6.988 16 C -0.417 4.417 17 C -0.565 4.565 18 H 0.056 0.944 19 C 0.029 3.971 20 N -0.905 5.905 21 Si 0.958 3.042 22 H -0.264 1.264 23 H -0.265 1.265 24 H -0.270 1.270 25 C -0.086 4.086 26 H 0.078 0.922 27 C -0.156 4.156 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.421 0.579 38 H 0.200 0.800 39 H 0.200 0.800 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.275 0.725 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.477 -1.366 -14.717 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.170 4.170 7 C 0.038 3.962 8 H 0.079 0.921 9 N -0.349 5.349 10 C 0.319 3.681 11 O -0.461 6.461 12 C -0.776 4.776 13 S 2.617 3.383 14 O -0.985 6.985 15 O -0.985 6.985 16 C -0.550 4.550 17 C -0.604 4.604 18 H 0.074 0.926 19 C -0.174 4.174 20 N -0.542 5.542 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.194 1.194 25 C -0.105 4.105 26 H 0.097 0.903 27 C -0.213 4.213 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.260 0.740 38 H 0.217 0.783 39 H 0.217 0.783 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.544 -0.261 -15.433 26.503 hybrid contribution 0.561 -0.496 1.078 1.313 sum -20.984 -0.757 -14.355 25.436 Atomic orbital electron populations 1.21841 0.93520 1.02731 1.02013 1.21102 0.96693 0.98856 0.93790 0.92103 1.21644 0.93861 1.01747 0.97590 1.21488 0.96907 1.00201 0.96837 1.21958 0.99577 1.00938 0.94575 1.21182 0.95324 0.96031 0.83691 0.92053 1.45873 1.15990 1.43412 1.29668 1.19685 0.82830 0.81559 0.84052 1.90845 1.57483 1.35797 1.61979 1.30726 1.25159 1.15318 1.06349 1.07581 0.76943 0.76346 0.77424 1.93409 1.62979 1.84831 1.57242 1.93407 1.86736 1.33827 1.84518 1.27618 1.05068 1.09683 1.12673 1.20739 1.00361 1.25206 1.14085 0.92615 1.25708 1.02048 0.94028 0.95642 1.69974 1.39136 1.25722 1.19352 0.85547 0.78647 0.78843 0.78889 1.18940 1.18927 1.19406 1.21358 0.90861 0.98769 0.99464 0.90338 1.22059 1.02357 0.94291 1.02586 0.92641 0.92178 0.91285 0.90306 0.90964 0.90903 0.93027 0.89595 0.94506 0.73988 0.78257 0.78266 0.88679 0.88679 0.91615 0.91375 0.90482 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.84 71.98 0.64 -0.60 16 2 C -0.09 -1.01 2.49 -10.80 -0.03 -1.04 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.25 4.93 30.59 0.15 -1.10 16 5 C -0.12 -1.86 5.92 30.59 0.18 -1.68 16 6 C -0.13 -2.62 5.22 30.60 0.16 -2.46 16 7 C 0.14 2.90 2.15 45.01 0.10 3.00 16 8 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 9 N -0.70 -14.65 5.00 -442.44 -2.21 -16.86 16 10 C 0.53 16.68 7.81 87.66 0.68 17.37 16 11 O -0.58 -24.74 15.29 -0.19 0.00 -24.75 16 12 C -0.65 -17.43 6.29 71.24 0.45 -16.98 16 13 S 2.43 106.56 3.88 -56.49 -0.22 106.34 16 14 O -0.99 -50.87 17.95 -125.74 -2.26 -53.12 16 15 O -0.99 -50.86 17.95 -125.76 -2.26 -53.12 16 16 C -0.42 -19.64 5.56 71.23 0.40 -19.25 16 17 C -0.57 -32.16 9.13 25.60 0.23 -31.93 16 18 H 0.06 3.26 7.71 -2.91 -0.02 3.24 16 19 C 0.03 1.61 5.46 84.66 0.46 2.07 16 20 N -0.90 -50.26 13.29 21.45 0.28 -49.98 16 21 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 C -0.09 -1.12 2.41 -10.78 -0.03 -1.14 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 C -0.16 -1.38 7.98 71.98 0.57 -0.81 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.47 6.43 -2.39 -0.02 0.46 16 31 H 0.08 0.73 6.43 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.37 6.43 -2.39 -0.02 1.35 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 5.45 6.87 -92.71 -0.64 4.81 16 38 H 0.20 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.20 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 41 H 0.10 4.22 8.14 -2.39 -0.02 4.20 16 42 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.07 0.60 4.81 -2.39 -0.01 0.59 16 44 H 0.08 0.51 6.43 -2.39 -0.02 0.50 16 45 H 0.06 0.45 6.51 -2.38 -0.02 0.44 16 Total: -1.00 -84.04 363.60 -0.31 -84.36 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.35 Total: 16.26 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 3.97 Total: -54.56 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.93 Total: -66.84 kcal Atomic # 8 Polarization: -126.47 SS G_CDS: -4.52 Total: -130.98 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 106.56 SS G_CDS: -0.22 Total: 106.34 kcal Total: -84.04 -0.31 -84.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.137 kcal (2) G-P(sol) polarization free energy of solvation -84.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds