Wall clock time and date at job start Fri Apr 10 2020 23:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47220 * 239.99463 * 2 1 3 5 5 C 1.52998 * 109.47337 * 175.00235 * 4 2 1 6 6 H 1.08998 * 109.86938 * 54.29935 * 5 4 2 7 7 C 1.54102 * 109.88020 * 175.30255 * 5 4 2 8 8 C 1.54812 * 104.18189 * 121.45150 * 7 5 4 9 9 C 1.54991 * 102.09525 * 20.88557 * 8 7 5 10 10 O 1.43741 * 109.87862 * 293.29622 * 5 4 2 11 11 N 1.46506 * 109.46901 * 119.99556 * 2 1 3 12 12 S 1.65605 * 119.99934 * 265.00009 * 11 2 1 13 13 O 1.42102 * 104.27433 * 308.92928 * 12 11 2 14 14 O 1.42094 * 104.27510 * 181.07297 * 12 11 2 15 15 C 1.81398 * 104.45076 * 64.99939 * 12 11 2 16 16 C 1.52994 * 109.47227 * 172.65374 * 15 12 11 17 17 C 1.50704 * 115.54682 * 39.77816 * 16 15 12 18 18 H 1.07996 * 120.00062 * 264.80924 * 17 16 15 19 19 C 1.37879 * 120.00144 * 84.81649 * 17 16 15 20 20 N 1.31518 * 119.99842 * 353.64401 * 19 17 16 21 21 Si 1.86798 * 119.99953 * 173.65285 * 19 17 16 22 22 H 1.48500 * 109.47279 * 89.99761 * 21 19 17 23 23 H 1.48506 * 109.46727 * 209.99489 * 21 19 17 24 24 H 1.48497 * 109.47088 * 329.99299 * 21 19 17 25 25 C 1.52997 * 117.50181 * 254.07182 * 16 15 12 26 26 C 1.52996 * 117.50195 * 185.44489 * 16 15 12 27 27 H 1.08997 * 109.46837 * 60.00228 * 1 2 3 28 28 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46989 * 300.00490 * 1 2 3 30 30 H 1.09003 * 109.47245 * 295.00212 * 4 2 1 31 31 H 1.08996 * 109.47189 * 54.99753 * 4 2 1 32 32 H 1.08992 * 110.48716 * 240.13133 * 7 5 4 33 33 H 1.09002 * 110.48331 * 2.65026 * 7 5 4 34 34 H 1.09008 * 110.90452 * 139.08231 * 8 7 5 35 35 H 1.08994 * 110.90922 * 262.68221 * 8 7 5 36 36 H 1.08997 * 110.62337 * 81.47179 * 9 8 7 37 37 H 1.08996 * 110.61891 * 204.31546 * 9 8 7 38 38 H 0.96998 * 120.00095 * 84.99826 * 11 2 1 39 39 H 1.09005 * 109.47002 * 52.65448 * 15 12 11 40 40 H 1.09000 * 109.47368 * 292.65602 * 15 12 11 41 41 H 0.96993 * 120.00088 * 185.03627 * 20 19 17 42 42 H 1.09005 * 117.49818 * 359.97438 * 25 16 15 43 43 H 1.08997 * 117.49856 * 145.01985 * 25 16 15 44 44 H 1.09003 * 117.50427 * 214.98103 * 26 16 15 45 45 H 1.09006 * 117.49707 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3136 6 1 4.0017 -0.9793 -0.3844 7 6 4.0985 -1.4355 -2.5028 8 6 4.8571 -0.4007 -3.3691 9 6 5.1395 0.7318 -2.3494 10 8 3.9493 0.7547 -1.5289 11 7 2.0183 -0.6906 1.1963 12 16 2.4121 0.1774 2.5506 13 8 3.2874 1.1908 2.0750 14 8 2.8605 -0.8026 3.4767 15 6 0.8407 0.8992 3.0985 16 6 1.0378 1.5811 4.4538 17 6 2.3303 2.3384 4.6185 18 1 3.1801 1.8614 5.0840 19 6 2.4278 3.6403 4.1751 20 7 1.4381 4.1802 3.4978 21 14 3.9658 4.6371 4.5361 22 1 4.9459 4.4510 3.4360 23 1 3.6098 6.0748 4.6439 24 1 4.5643 4.1781 5.8152 25 6 0.4680 0.8784 5.6877 26 6 -0.2038 2.1431 5.1491 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7516 -1.7716 -1.2054 31 1 1.6054 -0.2620 -2.1369 32 1 4.7782 -2.2131 -2.1546 33 1 3.2735 -1.8743 -3.0640 34 1 5.7875 -0.8209 -3.7514 35 1 4.2298 -0.0419 -4.1851 36 1 6.0152 0.4948 -1.7452 37 1 5.2745 1.6845 -2.8615 38 1 2.1109 -1.6561 1.1951 39 1 0.0927 0.1120 3.1931 40 1 0.5040 1.6343 2.3675 41 1 1.5352 5.0695 3.1231 42 1 -0.0476 -0.0695 5.5338 43 1 1.0281 0.9637 6.6189 44 1 -0.0858 3.0604 5.7260 45 1 -1.1611 2.0275 4.6406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451152244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:10 Heat of formation + Delta-G solvation = -107.632350 kcal Electronic energy + Delta-G solvation = -26448.077098 eV Core-core repulsion = 22786.100945 eV Total energy + Delta-G solvation = -3661.976152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.50951 -36.66960 -36.59794 -35.88124 -34.75598 -32.16978 -31.98676 -31.04274 -29.39889 -28.06703 -25.82945 -25.34690 -22.40335 -21.15387 -21.10356 -20.81196 -19.63207 -18.58430 -16.93647 -16.54766 -16.18880 -16.01480 -15.44349 -15.13949 -14.88477 -14.64396 -14.21433 -13.72167 -13.65787 -13.51162 -13.28228 -13.00234 -12.43439 -12.25656 -12.12638 -12.01071 -11.74993 -11.70948 -11.31173 -11.12275 -11.02494 -11.00582 -10.91526 -10.85215 -10.75964 -10.67152 -10.46872 -10.39511 -10.27350 -10.01442 -9.68301 -9.55468 -9.07273 -8.83519 -8.46806 -8.04735 -6.09671 -4.24145 1.32735 3.37797 3.45768 3.48247 3.72006 3.93414 4.46013 4.48246 4.54790 4.78884 4.83678 4.95245 5.05223 5.15694 5.20008 5.20984 5.27679 5.36445 5.47408 5.56942 5.57805 5.59156 5.68455 5.71557 5.76936 5.84051 5.91128 5.95228 6.02285 6.09152 6.16336 6.30135 6.39157 6.41181 6.54624 6.68473 6.75247 7.01358 7.02519 7.24349 7.44389 7.47238 7.84941 8.25276 8.84433 9.52929 10.98015 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.005014 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.478340 B = 5583.168924 C = 6537.837429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.145 3.855 3 H 0.103 0.897 4 C -0.117 4.117 5 C 0.073 3.927 6 H 0.072 0.928 7 C -0.153 4.153 8 C -0.155 4.155 9 C 0.044 3.956 10 O -0.359 6.359 11 N -1.132 6.132 12 S 2.622 3.378 13 O -0.936 6.936 14 O -0.981 6.981 15 C -0.562 4.562 16 C 0.052 3.948 17 C -0.543 4.543 18 H 0.068 0.932 19 C 0.099 3.901 20 N -0.866 5.866 21 Si 0.888 3.112 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.205 4.205 26 C -0.145 4.145 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.405 0.595 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.265 0.735 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -10.324 -13.618 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.038 3.962 3 H 0.121 0.879 4 C -0.156 4.156 5 C 0.015 3.985 6 H 0.090 0.910 7 C -0.191 4.191 8 C -0.193 4.193 9 C -0.033 4.033 10 O -0.278 6.278 11 N -0.887 5.887 12 S 2.718 3.282 13 O -0.925 6.925 14 O -0.971 6.971 15 C -0.694 4.694 16 C 0.050 3.950 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.109 4.109 20 N -0.500 5.500 21 Si 0.715 3.285 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.242 4.242 26 C -0.183 4.183 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.285 -9.672 -13.245 16.403 hybrid contribution 0.061 0.049 -0.114 0.138 sum 0.345 -9.623 -13.358 16.467 Atomic orbital electron populations 1.22449 0.95840 1.02313 1.03057 1.20737 0.93203 0.97852 0.84414 0.87950 1.22024 0.94130 1.01065 0.98345 1.22771 0.95317 0.82821 0.97562 0.90990 1.23035 1.00542 0.98630 0.96890 1.23126 1.00770 0.96599 0.98773 1.23557 0.89189 0.99169 0.91400 1.89048 1.43180 1.24284 1.71304 1.56230 1.84641 1.19117 1.28760 1.04669 0.77601 0.73746 0.72148 1.93557 1.60899 1.59310 1.78748 1.93471 1.80328 1.60422 1.62909 1.30077 1.19798 1.09582 1.09902 1.18168 0.95162 0.97203 0.84488 1.20580 0.95983 0.97885 1.43601 0.91378 1.24878 0.95898 0.97019 0.93062 1.69945 1.31115 1.16373 1.32585 0.86621 0.83628 0.78819 0.79459 1.19502 1.21027 1.19486 1.23119 1.05784 0.95237 1.00093 1.22521 0.95763 0.95871 1.04180 0.91565 0.92288 0.91507 0.90423 0.90141 0.90818 0.90475 0.90547 0.90649 0.92263 0.89123 0.76372 0.88658 0.85450 0.92580 0.91340 0.89753 0.89675 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.15 2.08 2.77 -67.93 -0.19 1.89 16 3 H 0.10 1.78 7.11 -51.93 -0.37 1.42 16 4 C -0.12 -1.33 4.30 -26.73 -0.11 -1.44 16 5 C 0.07 0.95 3.35 -26.16 -0.09 0.86 16 6 H 0.07 1.04 7.63 -51.93 -0.40 0.64 16 7 C -0.15 -1.45 6.64 -25.20 -0.17 -1.62 16 8 C -0.15 -1.40 7.16 -24.72 -0.18 -1.58 16 9 C 0.04 0.52 7.72 38.21 0.29 0.82 16 10 O -0.36 -5.68 10.76 -35.23 -0.38 -6.06 16 11 N -1.13 -17.81 4.74 -4.89 -0.02 -17.83 16 12 S 2.62 56.96 4.58 -107.50 -0.49 56.47 16 13 O -0.94 -24.07 16.61 -57.54 -0.96 -25.03 16 14 O -0.98 -23.40 18.08 -57.54 -1.04 -24.44 16 15 C -0.56 -12.07 5.07 37.15 0.19 -11.88 16 16 C 0.05 1.29 1.64 -155.67 -0.26 1.04 16 17 C -0.54 -15.26 6.94 -34.44 -0.24 -15.50 16 18 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 19 C 0.10 2.78 5.39 -17.82 -0.10 2.68 16 20 N -0.87 -24.42 12.94 55.43 0.72 -23.70 16 21 Si 0.89 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.21 -4.57 9.88 -26.73 -0.26 -4.83 16 26 C -0.14 -3.35 9.48 -26.73 -0.25 -3.61 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.89 6.02 -51.93 -0.31 0.58 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 34 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 5.24 8.80 -34.47 -0.30 4.94 16 39 H 0.09 1.71 7.95 -51.92 -0.41 1.30 16 40 H 0.13 2.77 7.26 -51.92 -0.38 2.39 16 41 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 42 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 43 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -34.40 372.77 -10.19 -44.59 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.61 Total: 8.07 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: -1.01 Total: -34.97 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.69 Total: -41.53 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -2.37 Total: -55.53 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 56.96 SS G_CDS: -0.49 Total: 56.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.40 -10.19 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451152244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.040 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds