Wall clock time and date at job start Fri Apr 10 2020 23:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.67540 * 2 1 4 4 C 1.53296 * 109.68264 * 120.55558 * 2 1 3 5 5 O 1.42968 * 109.22009 * 172.02760 * 4 2 1 6 6 C 1.42964 * 114.16697 * 297.41847 * 5 4 2 7 7 C 1.52999 * 109.51307 * 302.66282 * 6 5 4 8 8 C 1.52993 * 109.51186 * 182.50493 * 6 5 4 9 9 C 1.53296 * 109.22103 * 62.58210 * 6 5 4 10 10 N 1.47145 * 109.68379 * 239.48571 * 2 1 3 11 11 S 1.65606 * 120.98165 * 9.71499 * 10 2 1 12 12 O 1.42097 * 104.28140 * 186.64204 * 11 10 2 13 13 O 1.42098 * 104.27796 * 314.50479 * 11 10 2 14 14 C 1.81402 * 104.44774 * 70.57067 * 11 10 2 15 15 C 1.53001 * 109.47229 * 171.45781 * 14 11 10 16 16 C 1.50704 * 115.54780 * 56.24681 * 15 14 11 17 17 H 1.07997 * 120.00059 * 265.04996 * 16 15 14 18 18 C 1.37873 * 119.99542 * 85.05009 * 16 15 14 19 19 N 1.31518 * 120.00446 * 359.77298 * 18 16 15 20 20 Si 1.86803 * 119.99600 * 179.77485 * 18 16 15 21 21 H 1.48491 * 109.47418 * 59.99778 * 20 18 16 22 22 H 1.48502 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47083 * 299.99693 * 20 18 16 24 24 C 1.53001 * 117.50008 * 270.57963 * 15 14 11 25 25 C 1.53002 * 117.50110 * 201.92145 * 15 14 11 26 26 H 1.09003 * 109.46745 * 200.32896 * 1 2 3 27 27 H 1.09005 * 109.47070 * 320.32310 * 1 2 3 28 28 H 1.08994 * 109.47396 * 80.32254 * 1 2 3 29 29 H 1.08995 * 109.51406 * 291.95076 * 4 2 1 30 30 H 1.08995 * 109.51157 * 52.10173 * 4 2 1 31 31 H 1.08994 * 109.47130 * 179.75007 * 7 6 5 32 32 H 1.09006 * 109.46754 * 299.74661 * 7 6 5 33 33 H 1.09002 * 109.47410 * 59.73973 * 7 6 5 34 34 H 1.09001 * 109.47240 * 300.25633 * 8 6 5 35 35 H 1.08999 * 109.47009 * 60.25594 * 8 6 5 36 36 H 1.09003 * 109.47266 * 180.25695 * 8 6 5 37 37 H 1.08999 * 109.68442 * 187.97321 * 9 6 5 38 38 H 1.08997 * 109.71343 * 67.43715 * 9 6 5 39 39 H 1.08997 * 109.47632 * 291.45911 * 14 11 10 40 40 H 1.09006 * 109.46822 * 51.46208 * 14 11 10 41 41 H 0.96996 * 119.99759 * 185.03294 * 19 18 16 42 42 H 1.09004 * 117.49804 * 359.97438 * 24 15 14 43 43 H 1.09000 * 117.50048 * 145.01636 * 24 15 14 44 44 H 1.09001 * 117.49466 * 214.98367 * 25 15 14 45 45 H 1.08999 * 117.49719 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7338 1.2430 5 8 3.4636 -0.8914 1.1416 6 6 3.8860 -1.6894 0.0332 7 6 3.2334 -3.0705 0.1197 8 6 5.4083 -1.8395 0.0623 9 6 3.4639 -1.0046 -1.2717 10 7 2.0256 -0.7035 -1.1936 11 16 0.9951 -1.1440 -2.4128 12 8 1.8001 -1.9214 -3.2885 13 8 -0.1189 -1.7154 -1.7408 14 6 0.5288 0.4227 -3.1994 15 6 -0.2583 0.1361 -4.4798 16 6 -1.4881 -0.7181 -4.3093 17 1 -1.4315 -1.7845 -4.4707 18 6 -2.6854 -0.1383 -3.9472 19 7 -2.7533 1.1597 -3.7462 20 14 -4.2112 -1.1963 -3.7419 21 1 -3.9707 -2.2122 -2.6860 22 1 -5.3593 -0.3388 -3.3524 23 1 -4.5166 -1.8787 -5.0250 24 6 0.5367 -0.0211 -5.7775 25 6 -0.3040 1.2362 -5.5422 26 1 -0.3633 -0.9637 0.3570 27 1 -0.3633 0.7910 0.6562 28 1 -0.3634 0.1727 -1.0130 29 1 1.8073 -0.1533 2.1340 30 1 1.5747 -1.7142 1.3090 31 1 3.5524 -3.6768 -0.7280 32 1 3.5340 -3.5569 1.0478 33 1 2.1490 -2.9618 0.1012 34 1 5.8717 -0.8547 0.0028 35 1 5.7077 -2.3265 0.9903 36 1 5.7301 -2.4442 -0.7856 37 1 3.6545 -1.6698 -2.1138 38 1 4.0260 -0.0796 -1.4000 39 1 -0.0898 1.0031 -2.5149 40 1 1.4280 0.9879 -3.4446 41 1 -3.5759 1.5577 -3.4211 42 1 1.6205 0.0800 -5.7192 43 1 0.1701 -0.7422 -6.5081 44 1 -1.2235 1.3418 -6.1180 45 1 0.2263 2.1643 -5.3288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451471066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:16 Heat of formation + Delta-G solvation = -102.219438 kcal Electronic energy + Delta-G solvation = -27398.526184 eV Core-core repulsion = 23736.784753 eV Total energy + Delta-G solvation = -3661.741431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95787 -38.59278 -38.25361 -36.86011 -36.28827 -34.87358 -34.10754 -31.52628 -30.02322 -28.53145 -27.62295 -26.94506 -26.37976 -23.31094 -22.98771 -21.39555 -20.73372 -19.67508 -18.51626 -18.20708 -17.84319 -17.00463 -16.93668 -16.66831 -16.23133 -15.92892 -15.80891 -15.43674 -15.35162 -14.88969 -14.54929 -14.17235 -13.78513 -13.60511 -13.31773 -13.23695 -13.15048 -12.99433 -12.95995 -12.92590 -12.85051 -12.83152 -12.62293 -12.45233 -12.41310 -12.22440 -12.15699 -11.98318 -11.85873 -11.56884 -11.15464 -11.04932 -10.98505 -10.52407 -10.04485 -9.62035 -8.22413 -6.39475 -0.57269 1.36194 1.38760 1.46575 1.86379 2.37673 2.74927 2.93765 3.05767 3.32568 3.42293 3.51746 3.66956 3.88959 3.94473 3.95823 4.04414 4.15464 4.22903 4.35953 4.49618 4.54002 4.54584 4.61106 4.65738 4.69671 4.75445 4.79622 4.81525 4.89407 4.94544 4.97267 5.01243 5.07895 5.16691 5.22479 5.35052 5.38915 5.46422 5.58500 5.62523 5.66940 6.18276 6.21960 6.67386 7.35114 8.84465 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.005223 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.227150 B = 5359.761769 C = 5870.719430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.119 3.881 3 H 0.103 0.897 4 C 0.053 3.947 5 O -0.374 6.374 6 C 0.100 3.900 7 C -0.185 4.185 8 C -0.132 4.132 9 C 0.085 3.915 10 N -1.005 6.005 11 S 2.624 3.376 12 O -0.996 6.996 13 O -0.980 6.980 14 C -0.557 4.557 15 C 0.010 3.990 16 C -0.540 4.540 17 H 0.045 0.955 18 C 0.051 3.949 19 N -0.888 5.888 20 Si 0.928 3.072 21 H -0.277 1.277 22 H -0.271 1.271 23 H -0.268 1.268 24 C -0.195 4.195 25 C -0.134 4.134 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.046 0.954 29 H 0.131 0.869 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.267 0.733 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -0.095 9.848 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.014 3.986 3 H 0.120 0.880 4 C -0.025 4.025 5 O -0.293 6.293 6 C 0.059 3.941 7 C -0.242 4.242 8 C -0.190 4.190 9 C -0.040 4.040 10 N -0.845 5.845 11 S 2.724 3.276 12 O -0.986 6.986 13 O -0.970 6.970 14 C -0.689 4.689 15 C 0.008 3.992 16 C -0.577 4.577 17 H 0.063 0.937 18 C -0.153 4.153 19 N -0.524 5.524 20 Si 0.753 3.247 21 H -0.203 1.203 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.232 4.232 25 C -0.173 4.173 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.064 0.936 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.680 -0.758 9.771 16.828 hybrid contribution -1.594 0.059 -0.390 1.642 sum 12.085 -0.699 9.381 15.315 Atomic orbital electron populations 1.22569 0.93563 1.04693 1.03469 1.21825 0.94093 0.97385 0.85332 0.87957 1.23117 0.81468 1.00284 0.97590 1.87941 1.21928 1.71489 1.47897 1.21941 0.97011 0.89589 0.85592 1.22469 1.00688 0.97370 1.03710 1.21750 0.89565 1.03772 1.03908 1.22409 0.79643 1.02248 0.99725 1.58040 1.19083 1.74665 1.32666 1.04433 0.72623 0.77380 0.73137 1.93398 1.69357 1.68579 1.67275 1.93533 1.53991 1.76603 1.72827 1.30041 1.08348 1.20318 1.10174 1.18388 0.94861 1.00936 0.85000 1.20642 0.93754 0.92925 1.50372 0.93665 1.25432 1.00534 0.95749 0.93538 1.70018 1.28486 1.10317 1.43581 0.86073 0.79963 0.79674 0.79021 1.20263 1.19518 1.19315 1.23218 0.97392 1.01339 1.01298 1.22455 0.99625 0.91811 1.03380 0.91071 0.88096 0.93573 0.85112 0.92949 0.90980 0.90153 0.94041 0.90657 0.90692 0.89508 0.88400 0.88790 0.85634 0.85360 0.92418 0.88419 0.90100 0.91478 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.72 7.88 71.98 0.57 -5.15 16 2 C 0.12 3.16 3.70 44.97 0.17 3.33 16 3 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.05 1.23 5.86 72.08 0.42 1.65 16 5 O -0.37 -8.81 10.23 -148.98 -1.52 -10.34 16 6 C 0.10 2.26 1.11 -10.70 -0.01 2.25 16 7 C -0.18 -4.53 8.10 71.98 0.58 -3.95 16 8 C -0.13 -2.12 8.85 71.98 0.64 -1.48 16 9 C 0.08 2.19 5.36 86.35 0.46 2.65 16 10 N -1.01 -31.15 2.76 -489.39 -1.35 -32.51 16 11 S 2.62 108.47 4.35 -56.49 -0.25 108.23 16 12 O -1.00 -44.36 16.28 -127.65 -2.08 -46.44 16 13 O -0.98 -46.99 13.93 -127.65 -1.78 -48.76 16 14 C -0.56 -23.16 5.75 71.98 0.41 -22.74 16 15 C 0.01 0.50 1.49 -52.93 -0.08 0.42 16 16 C -0.54 -30.00 7.77 25.60 0.20 -29.80 16 17 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 18 C 0.05 2.81 5.42 84.65 0.46 3.26 16 19 N -0.89 -48.64 12.76 21.45 0.27 -48.37 16 20 Si 0.93 44.21 29.54 68.60 2.03 46.24 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 C -0.20 -8.45 9.93 30.62 0.30 -8.15 16 25 C -0.13 -6.05 9.30 30.62 0.28 -5.76 16 26 H 0.07 2.38 7.11 -2.39 -0.02 2.37 16 27 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.05 1.75 3.53 -3.46 -0.01 1.74 16 29 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.33 6.08 -2.39 -0.01 1.31 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.04 1.22 6.11 -2.39 -0.01 1.20 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 2.69 6.60 -2.39 -0.02 2.68 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.13 5.39 6.35 -2.39 -0.02 5.38 16 40 H 0.13 4.39 8.10 -2.39 -0.02 4.37 16 41 H 0.27 13.89 8.32 -92.71 -0.77 13.11 16 42 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 43 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -68.14 357.55 0.70 -67.45 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.97 Total: 27.98 kcal Atomic # 6 Polarization: -67.88 SS G_CDS: 4.41 Total: -63.47 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.08 Total: -80.88 kcal Atomic # 8 Polarization: -100.16 SS G_CDS: -5.38 Total: -105.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 108.47 SS G_CDS: -0.25 Total: 108.23 kcal Total: -68.14 0.70 -67.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451471066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.774 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds