Wall clock time and date at job start Fri Apr 10 2020 23:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34787 * 119.99695 * 2 1 4 4 O 1.21541 * 119.99970 * 359.97438 * 3 2 1 5 5 C 1.47861 * 119.99657 * 180.02562 * 3 2 1 6 6 C 1.39699 * 120.47945 * 359.97438 * 5 3 2 7 7 N 1.31744 * 120.94043 * 180.02562 * 6 5 3 8 8 C 1.31722 * 122.07337 * 359.97427 * 7 6 5 9 9 C 1.39895 * 120.83981 * 0.02562 * 8 7 6 10 10 C 1.47232 * 120.51499 * 179.97438 * 9 8 7 11 11 C 1.34798 * 120.00074 * 359.97438 * 10 9 8 12 12 C 1.46422 * 119.99638 * 179.72430 * 11 10 9 13 13 O 1.21692 * 120.00665 * 0.28031 * 12 11 10 14 14 N 1.34777 * 119.99831 * 180.27762 * 12 11 10 15 15 C 1.46505 * 119.99813 * 359.97438 * 14 12 11 16 16 C 1.46504 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.08993 * 109.46564 * 0.02562 * 16 14 12 18 18 C 1.52999 * 109.47119 * 240.00007 * 16 14 12 19 19 C 1.50702 * 109.46932 * 119.99932 * 16 14 12 20 20 H 1.07997 * 120.00122 * 5.45723 * 19 16 14 21 21 C 1.37877 * 119.99694 * 185.45772 * 19 16 14 22 22 N 1.31511 * 120.00082 * 9.61863 * 21 19 16 23 23 Si 1.86809 * 119.99827 * 189.61904 * 21 19 16 24 24 H 1.48498 * 109.46710 * 84.99350 * 23 21 19 25 25 H 1.48500 * 109.47044 * 204.99612 * 23 21 19 26 26 H 1.48495 * 109.47008 * 324.99778 * 23 21 19 27 27 C 1.39674 * 120.47841 * 180.28354 * 5 3 2 28 28 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47124 * 300.00005 * 1 2 3 30 30 H 1.08997 * 109.47251 * 60.00066 * 1 2 3 31 31 H 0.97000 * 120.00285 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.52626 * 0.02562 * 6 5 3 33 33 H 1.07997 * 119.58036 * 180.02562 * 8 7 6 34 34 H 1.08004 * 119.99820 * 180.02562 * 10 9 8 35 35 H 1.07995 * 119.99508 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.46654 * 90.00561 * 15 14 12 37 37 H 1.09002 * 109.47224 * 209.99931 * 15 14 12 38 38 H 1.08996 * 109.47398 * 330.00062 * 15 14 12 39 39 H 1.09003 * 109.46904 * 63.28795 * 18 16 14 40 40 H 1.09001 * 109.46770 * 183.28758 * 18 16 14 41 41 H 1.09001 * 109.47298 * 303.28679 * 18 16 14 42 42 H 0.97003 * 119.99766 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.92850 * 359.97035 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 -0.0006 6 6 4.3260 -0.0366 -0.0006 7 7 5.6434 -0.0472 -0.0006 8 6 6.3519 1.0633 -0.0011 9 6 5.7249 2.3139 -0.0011 10 6 6.5238 3.5506 -0.0011 11 6 7.8701 3.4834 -0.0005 12 6 8.6644 4.7134 -0.0066 13 8 8.1094 5.7963 -0.0070 14 7 10.0105 4.6462 -0.0117 15 6 10.6788 3.3425 -0.0106 16 6 10.8054 5.8768 -0.0184 17 1 10.1393 6.7395 -0.0178 18 6 11.6830 5.9103 -1.2712 19 6 11.6795 5.9168 1.2085 20 1 11.7124 5.0685 1.8760 21 6 12.4373 7.0365 1.4789 22 7 12.2588 8.1359 0.7795 23 14 13.7176 6.9919 2.8385 24 1 14.9870 6.4361 2.3048 25 1 13.9531 8.3690 3.3420 26 1 13.2304 6.1352 3.9492 27 6 4.3259 2.3710 0.0054 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.7861 -0.9720 -0.0006 33 1 7.4304 1.0076 -0.0015 34 1 6.0310 4.5117 -0.0007 35 1 8.3626 2.5223 -0.0005 36 1 10.8406 3.0163 -1.0380 37 1 11.6386 3.4266 0.4992 38 1 10.0547 2.6146 0.5077 39 1 11.0497 5.9403 -2.1578 40 1 12.3168 6.7968 -1.2472 41 1 12.3079 5.0177 -1.3011 42 1 12.7922 8.9235 0.9695 43 1 3.8090 3.3194 0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491750827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:11 Heat of formation + Delta-G solvation = -12.036183 kcal Electronic energy + Delta-G solvation = -25002.241073 eV Core-core repulsion = 21241.259081 eV Total energy + Delta-G solvation = -3760.981992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98669 -39.47106 -39.01323 -35.54923 -35.20621 -34.48999 -32.91645 -32.72352 -30.56538 -29.25991 -27.49100 -26.19373 -25.28468 -25.08942 -23.91955 -22.64325 -21.17460 -20.01706 -18.45093 -18.32360 -17.32316 -16.97862 -16.56772 -16.28704 -15.76500 -15.74148 -15.17523 -14.75244 -14.46510 -14.28913 -14.24723 -13.99437 -13.49041 -13.26084 -13.21865 -12.79201 -12.56460 -12.49944 -12.46590 -12.14989 -11.70787 -11.37361 -11.04671 -11.00299 -10.90488 -10.75306 -10.70246 -10.30255 -10.20090 -10.04557 -9.82199 -9.63073 -9.25845 -9.05443 -8.63620 -8.41540 -7.61816 -6.09864 -4.14895 0.05461 0.53310 1.83223 2.52015 2.64742 3.26432 3.33414 3.35056 3.49032 3.76120 3.89461 3.95455 4.23811 4.35573 4.37951 4.47622 4.51746 4.72540 4.79311 5.00602 5.04230 5.18138 5.22516 5.33662 5.37999 5.58321 5.66256 5.70238 5.83212 5.98428 6.11422 6.26740 6.29932 6.38640 6.67030 6.74989 6.91479 6.97273 7.32807 7.42736 7.53365 7.67404 7.69720 7.91299 8.15120 8.48546 8.82751 9.01123 9.49973 10.97507 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.002166 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.855818 B =12921.729342 C =13165.800384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.565 3.435 4 O -0.529 6.529 5 C -0.190 4.190 6 C 0.131 3.869 7 N -0.482 5.482 8 C 0.134 3.866 9 C -0.108 4.108 10 C -0.055 4.055 11 C -0.171 4.171 12 C 0.529 3.471 13 O -0.550 6.550 14 N -0.585 5.585 15 C 0.080 3.920 16 C 0.254 3.746 17 H 0.071 0.929 18 C -0.140 4.140 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.001 4.001 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.402 0.598 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.032 0.968 42 H 0.264 0.736 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 -20.733 -2.938 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.384 5.384 3 C 0.351 3.649 4 O -0.405 6.405 5 C -0.196 4.196 6 C -0.028 4.028 7 N -0.189 5.189 8 C -0.023 4.023 9 C -0.110 4.110 10 C -0.076 4.076 11 C -0.191 4.191 12 C 0.318 3.682 13 O -0.431 6.431 14 N -0.315 5.315 15 C -0.064 4.064 16 C 0.154 3.846 17 H 0.089 0.911 18 C -0.199 4.199 19 C -0.569 4.569 20 H 0.078 0.922 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.027 4.027 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.237 0.763 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.160 0.840 35 H 0.146 0.854 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.106 -19.998 -2.958 26.482 hybrid contribution 0.651 0.223 0.753 1.020 sum -16.455 -19.775 -2.205 25.820 Atomic orbital electron populations 1.21589 0.78796 1.02535 1.02721 1.45685 1.08135 1.08420 1.76165 1.18078 0.86689 0.83926 0.76194 1.90812 1.69677 1.31073 1.48973 1.20847 0.94065 0.95550 1.09100 1.22973 0.90346 0.96566 0.92889 1.67649 1.07483 1.31127 1.12688 1.23393 1.00882 0.86675 0.91365 1.20090 0.93564 0.95090 1.02284 1.22118 0.93625 0.96213 0.95623 1.23385 0.94690 0.99053 1.02020 1.18148 0.82895 0.88777 0.78406 1.90780 1.71101 1.29886 1.51320 1.48159 1.05030 1.08814 1.69466 1.21680 0.99383 0.84800 1.00528 1.18987 0.89893 0.81916 0.93785 0.91101 1.22009 0.99741 1.01595 0.96518 1.21257 1.25607 1.01613 1.08409 0.92161 1.24911 0.97349 0.94887 0.96516 1.69973 1.39399 1.01605 1.41066 0.86557 0.81860 0.77313 0.81957 1.20476 1.21197 1.19976 1.21988 0.92590 0.98701 0.89385 0.90331 0.91888 0.91901 0.76328 0.82548 0.81533 0.84040 0.85438 0.93685 0.89957 0.92642 0.96488 0.90538 0.94902 0.92631 0.82862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.70 59.85 0.64 1.06 16 2 N -0.73 -4.37 5.67 -68.04 -0.39 -4.75 16 3 C 0.56 5.56 7.78 -12.32 -0.10 5.46 16 4 O -0.53 -7.25 16.41 5.33 0.09 -7.16 16 5 C -0.19 -1.81 5.88 -104.88 -0.62 -2.42 16 6 C 0.13 1.05 10.71 -17.04 -0.18 0.86 16 7 N -0.48 -4.77 10.33 -12.51 -0.13 -4.90 16 8 C 0.13 1.35 10.58 -16.98 -0.18 1.17 16 9 C -0.11 -1.20 5.88 -104.96 -0.62 -1.82 16 10 C -0.06 -0.73 9.48 -37.15 -0.35 -1.09 16 11 C -0.17 -2.49 8.62 -37.51 -0.32 -2.81 16 12 C 0.53 10.84 7.61 -12.97 -0.10 10.75 16 13 O -0.55 -13.58 15.56 5.20 0.08 -13.50 16 14 N -0.58 -12.26 2.75 -176.90 -0.49 -12.75 16 15 C 0.08 1.27 9.07 59.85 0.54 1.81 16 16 C 0.25 6.44 2.50 -69.08 -0.17 6.27 16 17 H 0.07 2.11 6.84 -51.93 -0.36 1.76 16 18 C -0.14 -3.26 9.12 37.16 0.34 -2.92 16 19 C -0.53 -14.20 8.01 -34.44 -0.28 -14.47 16 20 H 0.06 1.58 7.16 -52.49 -0.38 1.20 16 21 C 0.07 1.82 5.17 -17.82 -0.09 1.73 16 22 N -0.88 -25.24 12.16 55.43 0.67 -24.57 16 23 Si 0.90 20.88 29.55 -169.99 -5.02 15.85 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.00 -0.01 9.48 -38.38 -0.36 -0.37 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 1.15 6.88 -40.82 -0.28 0.87 16 32 H 0.16 0.64 6.40 -52.49 -0.34 0.30 16 33 H 0.17 1.37 6.17 -52.49 -0.32 1.05 16 34 H 0.14 2.03 7.52 -52.48 -0.39 1.63 16 35 H 0.13 1.42 4.24 -52.49 -0.22 1.19 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 38 H 0.05 0.69 6.09 -51.93 -0.32 0.37 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 1.94 6.84 -51.93 -0.36 1.59 16 41 H 0.03 0.69 7.56 -51.93 -0.39 0.29 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.15 1.65 7.73 -52.48 -0.41 1.25 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -35.29 363.71 -6.92 -42.21 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.37 Total: 0.88 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.85 Total: 3.20 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.33 Total: -46.97 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.29 -6.92 -42.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491750827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.175 kcal (2) G-P(sol) polarization free energy of solvation -35.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds