Wall clock time and date at job start Fri Apr 10 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47186 * 2 1 4 4 C 1.46498 * 119.99686 * 269.99538 * 3 2 1 5 5 C 1.50694 * 109.47377 * 270.00026 * 4 3 2 6 6 H 1.08008 * 119.99873 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00242 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99545 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47042 * 59.99957 * 9 7 5 11 11 H 1.48498 * 109.46779 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47057 * 299.99824 * 9 7 5 13 13 C 1.34773 * 119.99720 * 89.99801 * 3 2 1 14 14 O 1.21700 * 119.99374 * 179.97438 * 13 3 2 15 15 C 1.46421 * 120.00266 * 359.97438 * 13 3 2 16 16 C 1.34804 * 119.99923 * 179.97438 * 15 13 3 17 17 C 1.47228 * 120.00056 * 180.02562 * 16 15 13 18 18 C 1.39935 * 120.51557 * 359.97438 * 17 16 15 19 19 N 1.31699 * 120.83738 * 180.02562 * 18 17 16 20 20 C 1.31771 * 122.07360 * 359.72619 * 19 18 17 21 21 C 1.39657 * 120.93864 * 0.53716 * 20 19 18 22 22 C 1.47866 * 120.47707 * 179.75309 * 21 20 19 23 23 O 1.21552 * 120.00226 * 179.45079 * 22 21 20 24 24 N 1.34777 * 119.99820 * 359.71979 * 22 21 20 25 25 C 1.46496 * 120.00262 * 180.02562 * 24 22 21 26 26 C 1.39710 * 119.04784 * 359.47885 * 21 20 19 27 27 H 1.08995 * 109.47074 * 300.00497 * 1 2 3 28 28 H 1.09000 * 109.46543 * 60.00648 * 1 2 3 29 29 H 1.09003 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47509 * 239.99337 * 2 1 3 31 31 H 1.08998 * 109.47002 * 119.99969 * 2 1 3 32 32 H 1.08998 * 109.47122 * 30.00177 * 4 3 2 33 33 H 1.08999 * 109.46779 * 149.99598 * 4 3 2 34 34 H 0.97005 * 119.99719 * 179.97438 * 8 7 5 35 35 H 1.07997 * 120.00130 * 0.02562 * 15 13 3 36 36 H 1.07997 * 119.99947 * 0.02562 * 16 15 13 37 37 H 1.07992 * 119.58497 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.53166 * 180.29487 * 20 19 18 39 39 H 0.96999 * 120.00043 * 0.02562 * 24 22 21 40 40 H 1.08992 * 109.47627 * 180.02562 * 25 24 22 41 41 H 1.09004 * 109.46875 * 300.00167 * 25 24 22 42 42 H 1.08992 * 109.47174 * 59.99739 * 25 24 22 43 43 H 1.08003 * 120.93188 * 180.26775 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0960 7 6 4.1496 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6176 9 14 5.9140 2.0973 -3.4162 10 1 6.1419 0.6408 -3.5940 11 1 6.1619 2.7982 -4.7017 12 1 6.8411 2.6207 -2.3809 13 6 2.2430 2.0165 1.1672 14 8 2.6491 3.1638 1.1671 15 6 1.9983 1.3265 2.4352 16 6 2.2235 1.9618 3.6027 17 6 1.9781 1.2678 4.8777 18 6 1.5106 -0.0511 4.8903 19 7 1.2884 -0.6777 6.0272 20 6 1.4974 -0.1040 7.1949 21 6 1.9582 1.2119 7.2761 22 6 2.1841 1.8475 8.5919 23 8 2.5948 2.9900 8.6526 24 7 1.9397 1.1583 9.7241 25 6 2.1629 1.7882 11.0277 26 6 2.2082 1.9171 6.0963 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5819 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6758 3.5174 -4.4432 35 1 1.6383 0.3083 2.4353 36 1 2.5839 2.9799 3.6027 37 1 1.3289 -0.5613 3.9561 38 1 1.3060 -0.6579 8.1020 39 1 1.6160 0.2452 9.6757 40 1 1.9131 1.0824 11.8198 41 1 3.2099 2.0780 11.1167 42 1 1.5323 2.6727 11.1166 43 1 2.5692 2.9347 6.1236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492204921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:18 Heat of formation + Delta-G solvation = -15.860009 kcal Electronic energy + Delta-G solvation = -25030.249729 eV Core-core repulsion = 21269.101924 eV Total energy + Delta-G solvation = -3761.147805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98361 -39.47087 -39.00523 -35.46351 -35.21141 -34.53418 -32.88696 -32.71437 -30.42642 -30.05246 -27.56439 -27.23296 -25.13008 -23.99104 -23.12300 -22.93937 -21.65527 -20.34758 -18.46367 -18.32281 -17.32226 -16.94136 -16.57902 -16.35805 -15.80078 -15.73910 -15.26464 -14.74929 -14.38496 -14.30515 -14.17450 -14.00567 -13.48578 -13.43935 -13.26479 -13.21822 -12.78706 -12.56881 -12.36054 -12.07143 -12.00237 -11.59817 -11.20598 -10.99139 -10.92180 -10.76144 -10.69610 -10.51404 -10.14223 -10.04201 -9.81900 -9.66403 -9.62712 -9.05147 -8.62379 -8.43247 -7.67624 -6.04362 -4.09223 0.05939 0.53835 1.84378 2.52432 2.64966 3.32196 3.36741 3.39692 3.49704 3.75965 3.88552 3.97944 4.23989 4.35881 4.41497 4.48114 4.52015 4.72058 4.79598 4.99027 5.04378 5.14438 5.29164 5.33267 5.35003 5.38722 5.58936 5.60835 5.65392 5.76136 5.83394 6.00146 6.11877 6.21846 6.29457 6.36429 6.48552 6.91692 7.07226 7.42823 7.43525 7.52127 7.69991 7.91731 8.22629 8.38294 8.88258 9.04878 9.55677 11.03601 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.002362 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.555541 B =11852.400025 C =12544.824492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.531 3.469 14 O -0.540 6.540 15 C -0.171 4.171 16 C -0.057 4.057 17 C -0.108 4.108 18 C 0.134 3.866 19 N -0.482 5.482 20 C 0.130 3.870 21 C -0.190 4.190 22 C 0.565 3.435 23 O -0.529 6.529 24 N -0.732 5.732 25 C 0.087 3.913 26 C -0.001 4.001 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.402 0.598 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -10.403 24.897 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.319 3.681 14 O -0.420 6.420 15 C -0.191 4.191 16 C -0.077 4.077 17 C -0.110 4.110 18 C -0.023 4.023 19 N -0.189 5.189 20 C -0.028 4.028 21 C -0.195 4.195 22 C 0.351 3.649 23 O -0.405 6.405 24 N -0.384 5.384 25 C -0.056 4.056 26 C -0.027 4.027 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.174 0.826 39 H 0.237 0.763 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.953 -9.718 24.717 27.454 hybrid contribution 1.082 0.114 -0.378 1.151 sum -5.872 -9.604 24.339 26.816 Atomic orbital electron populations 1.22244 0.96641 1.01489 1.02502 1.21476 0.93590 0.84153 1.02753 1.48189 1.62747 1.13219 1.07754 1.19297 0.96337 0.93711 0.77995 1.21388 0.96866 1.32012 1.06298 0.92488 1.24940 0.97881 0.94920 0.96391 1.69923 1.35717 1.33324 1.14374 0.86550 0.84770 0.78238 0.77820 1.20245 1.21180 1.20175 1.18081 0.79415 0.86531 0.84054 1.90797 1.46027 1.17777 1.87389 1.23409 1.01782 1.00512 0.93427 1.22117 0.96234 1.00127 0.89238 1.20091 1.01379 0.95441 0.94053 1.23389 0.91355 0.90815 0.96779 1.67648 1.15763 1.37399 0.98124 1.22963 0.92661 0.90783 0.96408 1.20844 1.07566 0.96825 0.94295 1.18082 0.77404 0.85654 0.83761 1.90815 1.44846 1.17538 1.87333 1.45681 1.68836 1.17694 1.06189 1.21587 1.02248 0.98844 0.82964 1.21988 0.90735 1.00248 0.89725 0.92933 0.91977 0.92093 0.89794 0.91627 0.94876 0.93779 0.92651 0.85519 0.84043 0.81565 0.82556 0.76332 0.90330 0.91892 0.91898 0.82867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.61 5.84 -4.04 -0.02 1.58 16 3 N -0.59 -12.24 2.46 -176.71 -0.43 -12.67 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.35 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.53 10.94 7.61 -12.97 -0.10 10.84 16 14 O -0.54 -13.57 15.81 5.19 0.08 -13.49 16 15 C -0.17 -2.50 8.62 -37.51 -0.32 -2.82 16 16 C -0.06 -0.76 9.48 -37.15 -0.35 -1.11 16 17 C -0.11 -1.20 5.88 -104.96 -0.62 -1.82 16 18 C 0.13 1.35 10.58 -16.97 -0.18 1.17 16 19 N -0.48 -4.76 10.33 -12.51 -0.13 -4.89 16 20 C 0.13 1.04 10.71 -17.05 -0.18 0.86 16 21 C -0.19 -1.82 5.88 -104.88 -0.62 -2.43 16 22 C 0.56 5.60 7.78 -12.32 -0.10 5.50 16 23 O -0.53 -7.30 16.41 5.32 0.09 -7.21 16 24 N -0.73 -4.41 5.67 -68.05 -0.39 -4.79 16 25 C 0.09 0.42 10.70 59.84 0.64 1.06 16 26 C 0.00 -0.01 9.48 -38.38 -0.36 -0.37 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 0.81 6.09 -51.93 -0.32 0.50 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.13 1.42 4.24 -52.49 -0.22 1.19 16 36 H 0.14 2.06 7.52 -52.49 -0.39 1.67 16 37 H 0.17 1.37 6.17 -52.49 -0.32 1.04 16 38 H 0.16 0.64 6.40 -52.49 -0.34 0.31 16 39 H 0.40 1.17 6.88 -40.82 -0.28 0.89 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.15 1.67 7.73 -52.48 -0.41 1.27 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -36.72 371.19 -7.34 -44.06 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.59 Total: -1.08 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.28 Total: 3.43 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.21 Total: -48.18 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.72 -7.34 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492204921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.195 kcal (2) G-P(sol) polarization free energy of solvation -36.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds