Wall clock time and date at job start Fri Apr 10 2020 23:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47186 * 2 1 4 4 C 1.46498 * 119.99686 * 269.99538 * 3 2 1 5 5 C 1.50694 * 109.47377 * 270.00026 * 4 3 2 6 6 H 1.08008 * 119.99873 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00242 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99545 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00007 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47042 * 59.99957 * 9 7 5 11 11 H 1.48498 * 109.46779 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47057 * 299.99824 * 9 7 5 13 13 C 1.34773 * 119.99720 * 89.99801 * 3 2 1 14 14 O 1.21700 * 119.99374 * 179.97438 * 13 3 2 15 15 C 1.46421 * 120.00266 * 359.97438 * 13 3 2 16 16 C 1.34804 * 119.99923 * 179.97438 * 15 13 3 17 17 C 1.47228 * 120.00056 * 180.02562 * 16 15 13 18 18 C 1.39935 * 120.51557 * 359.97438 * 17 16 15 19 19 N 1.31699 * 120.83738 * 180.02562 * 18 17 16 20 20 C 1.31771 * 122.07360 * 359.72619 * 19 18 17 21 21 C 1.39657 * 120.93864 * 0.53716 * 20 19 18 22 22 C 1.47866 * 120.47707 * 179.75309 * 21 20 19 23 23 O 1.21552 * 120.00226 * 179.45079 * 22 21 20 24 24 N 1.34777 * 119.99820 * 359.71979 * 22 21 20 25 25 C 1.46496 * 120.00262 * 180.02562 * 24 22 21 26 26 C 1.39710 * 119.04784 * 359.47885 * 21 20 19 27 27 H 1.08995 * 109.47074 * 300.00497 * 1 2 3 28 28 H 1.09000 * 109.46543 * 60.00648 * 1 2 3 29 29 H 1.09003 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47509 * 239.99337 * 2 1 3 31 31 H 1.08998 * 109.47002 * 119.99969 * 2 1 3 32 32 H 1.08998 * 109.47122 * 30.00177 * 4 3 2 33 33 H 1.08999 * 109.46779 * 149.99598 * 4 3 2 34 34 H 0.97005 * 119.99719 * 179.97438 * 8 7 5 35 35 H 1.07997 * 120.00130 * 0.02562 * 15 13 3 36 36 H 1.07997 * 119.99947 * 0.02562 * 16 15 13 37 37 H 1.07992 * 119.58497 * 359.97438 * 18 17 16 38 38 H 1.07995 * 119.53166 * 180.29487 * 20 19 18 39 39 H 0.96999 * 120.00043 * 0.02562 * 24 22 21 40 40 H 1.08992 * 109.47627 * 180.02562 * 25 24 22 41 41 H 1.09004 * 109.46875 * 300.00167 * 25 24 22 42 42 H 1.08992 * 109.47174 * 59.99739 * 25 24 22 43 43 H 1.08003 * 120.93188 * 180.26775 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0960 7 6 4.1496 2.3903 -2.8774 8 7 3.3495 3.1263 -3.6176 9 14 5.9140 2.0973 -3.4162 10 1 6.1419 0.6408 -3.5940 11 1 6.1619 2.7982 -4.7017 12 1 6.8411 2.6207 -2.3809 13 6 2.2430 2.0165 1.1672 14 8 2.6491 3.1638 1.1671 15 6 1.9983 1.3265 2.4352 16 6 2.2235 1.9618 3.6027 17 6 1.9781 1.2678 4.8777 18 6 1.5106 -0.0511 4.8903 19 7 1.2884 -0.6777 6.0272 20 6 1.4974 -0.1040 7.1949 21 6 1.9582 1.2119 7.2761 22 6 2.1841 1.8475 8.5919 23 8 2.5948 2.9900 8.6526 24 7 1.9397 1.1583 9.7241 25 6 2.1629 1.7882 11.0277 26 6 2.2082 1.9171 6.0963 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5819 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6758 3.5174 -4.4432 35 1 1.6383 0.3083 2.4353 36 1 2.5839 2.9799 3.6027 37 1 1.3289 -0.5613 3.9561 38 1 1.3060 -0.6579 8.1020 39 1 1.6160 0.2452 9.6757 40 1 1.9131 1.0824 11.8198 41 1 3.2099 2.0780 11.1167 42 1 1.5323 2.6727 11.1166 43 1 2.5692 2.9347 6.1236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492204921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:17 Heat of formation + Delta-G solvation = -42.581294 kcal Electronic energy + Delta-G solvation = -25031.408451 eV Core-core repulsion = 21269.101924 eV Total energy + Delta-G solvation = -3762.306527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75746 -40.75019 -40.08462 -37.03756 -36.00673 -35.52822 -34.85826 -33.58936 -31.74046 -31.24344 -29.13764 -28.04818 -26.30262 -25.08771 -24.53087 -24.06060 -22.74226 -21.31178 -19.67172 -19.26561 -18.63301 -18.13027 -18.05800 -17.56543 -17.00067 -16.46280 -16.43640 -16.15910 -15.80931 -15.65878 -15.01013 -14.92619 -14.65391 -14.61292 -14.30833 -14.24284 -13.88487 -13.65185 -13.47616 -13.26420 -13.21637 -13.07949 -12.92138 -12.63361 -12.45802 -12.16247 -11.97054 -11.85732 -11.73249 -11.54624 -10.86625 -10.74356 -10.64448 -10.57921 -10.21881 -9.68392 -9.35344 -8.22383 -6.37432 -0.77333 -0.32446 0.81220 1.36127 1.40729 1.47966 1.72417 2.05715 2.26902 2.42290 2.45365 2.79896 3.06692 3.15270 3.38603 3.59393 3.69712 3.70407 3.87015 4.00735 4.11118 4.28768 4.38774 4.45267 4.54468 4.62936 4.66072 4.78376 4.82021 4.91449 4.97413 5.01182 5.06507 5.18349 5.22938 5.30163 5.32171 5.40372 5.43633 5.57761 5.86018 6.05956 6.39231 6.68825 6.69612 6.78870 7.07202 7.27133 7.45401 8.84293 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.002362 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.555541 B =11852.400025 C =12544.824492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.595 5.595 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.521 3.479 14 O -0.605 6.605 15 C -0.183 4.183 16 C -0.029 4.029 17 C -0.124 4.124 18 C 0.146 3.854 19 N -0.491 5.491 20 C 0.153 3.847 21 C -0.197 4.197 22 C 0.561 3.439 23 O -0.579 6.579 24 N -0.712 5.712 25 C 0.082 3.918 26 C -0.008 4.008 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.025 0.975 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.170 0.830 36 H 0.119 0.881 37 H 0.190 0.810 38 H 0.201 0.799 39 H 0.420 0.580 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -14.245 27.452 31.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.313 3.687 14 O -0.489 6.489 15 C -0.203 4.203 16 C -0.050 4.050 17 C -0.126 4.126 18 C -0.011 4.011 19 N -0.199 5.199 20 C -0.006 4.006 21 C -0.202 4.202 22 C 0.348 3.652 23 O -0.459 6.459 24 N -0.364 5.364 25 C -0.061 4.061 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.137 0.863 37 H 0.207 0.793 38 H 0.218 0.782 39 H 0.258 0.742 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.345 -13.661 27.308 31.405 hybrid contribution 1.135 1.306 -0.962 1.980 sum -6.210 -12.355 26.346 29.754 Atomic orbital electron populations 1.22183 0.94419 1.03704 1.01727 1.21854 0.95405 0.81080 1.04245 1.48196 1.62907 1.15224 1.06113 1.18724 0.95412 0.91524 0.80395 1.21677 0.97840 1.32074 1.06537 0.92793 1.25887 1.02485 0.94503 0.96462 1.70050 1.37809 1.34114 1.14812 0.85461 0.78901 0.79117 0.77293 1.18254 1.20342 1.20474 1.19020 0.77944 0.86025 0.85732 1.90753 1.49027 1.20695 1.88401 1.23095 1.04918 1.02091 0.90167 1.22100 0.93451 0.99103 0.90335 1.19844 1.03872 0.96306 0.92558 1.23720 0.89509 0.89867 0.97992 1.67811 1.16348 1.37291 0.98423 1.23617 0.89566 0.89885 0.97483 1.20880 1.08167 0.97569 0.93609 1.18219 0.77069 0.85200 0.84750 1.90799 1.47454 1.19706 1.87968 1.45600 1.67010 1.18226 1.05577 1.21763 1.01445 0.99725 0.83197 1.22033 0.90634 1.00116 0.90648 0.92037 0.94497 0.88241 0.90790 0.87595 0.95736 0.98663 0.92405 0.81274 0.86302 0.79327 0.78239 0.74185 0.86336 0.93004 0.92943 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 2 C 0.10 2.82 5.84 86.38 0.50 3.33 16 3 N -0.60 -25.46 2.46 -831.19 -2.04 -27.50 16 4 C 0.26 14.34 5.16 85.63 0.44 14.78 16 5 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 9 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.52 22.25 7.61 86.37 0.66 22.91 16 14 O -0.60 -32.55 15.81 -4.35 -0.07 -32.62 16 15 C -0.18 -5.18 8.62 23.61 0.20 -4.98 16 16 C -0.03 -0.78 9.48 23.85 0.23 -0.55 16 17 C -0.12 -2.57 5.88 -20.08 -0.12 -2.69 16 18 C 0.15 2.42 10.58 85.12 0.90 3.32 16 19 N -0.49 -7.60 10.33 -193.49 -2.00 -9.60 16 20 C 0.15 1.82 10.71 85.04 0.91 2.73 16 21 C -0.20 -3.36 5.88 -20.03 -0.12 -3.48 16 22 C 0.56 10.35 7.78 86.79 0.68 11.02 16 23 O -0.58 -16.19 16.41 -3.88 -0.06 -16.26 16 24 N -0.71 -6.54 5.67 -487.47 -2.76 -9.30 16 25 C 0.08 0.60 10.70 127.77 1.37 1.97 16 26 C -0.01 -0.17 9.48 23.05 0.22 0.05 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.11 2.26 6.09 -2.39 -0.01 2.24 16 32 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 33 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 34 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.17 3.17 4.24 -2.91 -0.01 3.16 16 36 H 0.12 3.72 7.52 -2.91 -0.02 3.70 16 37 H 0.19 2.17 6.17 -2.91 -0.02 2.15 16 38 H 0.20 0.49 6.40 -2.91 -0.02 0.47 16 39 H 0.42 0.58 6.88 -92.71 -0.64 -0.06 16 40 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.14 3.28 7.73 -2.91 -0.02 3.26 16 Total: -1.00 -87.10 371.19 3.09 -84.01 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.41 Total: 5.86 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 7.31 Total: 14.56 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -6.52 Total: -103.10 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -0.13 Total: -48.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -87.10 3.09 -84.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492204921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.425 kcal (2) G-P(sol) polarization free energy of solvation -87.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds