Wall clock time and date at job start Fri Apr 10 2020 23:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47214 * 2 1 4 4 C 1.46498 * 120.00178 * 269.99685 * 3 2 1 5 5 C 1.50695 * 109.47519 * 270.00083 * 4 3 2 6 6 H 1.07998 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00234 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00087 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99775 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.46916 * 90.00610 * 9 7 5 11 11 H 1.48504 * 109.46625 * 210.00394 * 9 7 5 12 12 H 1.48498 * 109.47279 * 330.00047 * 9 7 5 13 13 C 1.34777 * 119.99581 * 90.00327 * 3 2 1 14 14 O 1.21703 * 119.99853 * 180.02562 * 13 3 2 15 15 C 1.46422 * 120.00419 * 359.97438 * 13 3 2 16 16 C 1.34795 * 120.00263 * 187.33041 * 15 13 3 17 17 C 1.47231 * 120.00115 * 10.14438 * 16 15 13 18 18 C 1.39930 * 120.51618 * 43.69314 * 17 16 15 19 19 N 1.31696 * 120.83923 * 180.02562 * 18 17 16 20 20 C 1.31772 * 122.06895 * 0.02562 * 19 18 17 21 21 C 1.39660 * 120.94759 * 359.97438 * 20 19 18 22 22 C 1.47860 * 120.47783 * 179.97438 * 21 20 19 23 23 O 1.21547 * 119.99667 * 179.72601 * 22 21 20 24 24 N 1.34770 * 119.99986 * 0.02562 * 22 21 20 25 25 C 1.46499 * 119.99889 * 180.02562 * 24 22 21 26 26 C 1.39707 * 119.03854 * 0.25848 * 21 20 19 27 27 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46968 * 299.99926 * 1 2 3 29 29 H 1.09004 * 109.47026 * 60.00088 * 1 2 3 30 30 H 1.09002 * 109.46779 * 240.00033 * 2 1 3 31 31 H 1.09000 * 109.47088 * 120.00413 * 2 1 3 32 32 H 1.08998 * 109.47189 * 30.00565 * 4 3 2 33 33 H 1.09003 * 109.46910 * 149.99813 * 4 3 2 34 34 H 0.96997 * 120.00245 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99861 * 7.33213 * 15 13 3 36 36 H 1.08008 * 120.00105 * 190.14400 * 16 15 13 37 37 H 1.07997 * 119.57887 * 0.05189 * 18 17 16 38 38 H 1.08001 * 119.52512 * 179.97438 * 20 19 18 39 39 H 0.97006 * 120.00319 * 359.97438 * 24 22 21 40 40 H 1.09003 * 109.47107 * 179.97438 * 25 24 22 41 41 H 1.08999 * 109.47185 * 299.99766 * 25 24 22 42 42 H 1.08997 * 109.47305 * 59.99903 * 25 24 22 43 43 H 1.08007 * 120.92574 * 179.74120 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0962 7 6 4.1495 2.3905 -2.8774 8 7 5.3914 2.1834 -3.2572 9 14 3.0132 3.4360 -3.9286 10 1 3.1159 4.8561 -3.5068 11 1 3.4068 3.3137 -5.3553 12 1 1.6136 2.9693 -3.7596 13 6 2.2430 2.0164 1.1673 14 8 2.6483 3.1640 1.1673 15 6 1.9985 1.3263 2.4353 16 6 2.0801 2.0036 3.5979 17 6 2.1922 3.4716 3.5884 18 6 1.3938 4.2397 2.7337 19 7 1.4892 5.5531 2.7196 20 6 2.3307 6.2018 3.4990 21 6 3.1657 5.5153 4.3832 22 6 4.1065 6.2537 5.2527 23 8 4.8257 5.6476 6.0226 24 7 4.1621 7.5990 5.1958 25 6 5.0946 8.3306 6.0569 26 6 3.1035 4.1204 4.4299 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6878 -2.0283 33 1 2.0956 3.1410 -1.1383 34 1 5.7175 2.5739 -4.0831 35 1 1.7528 0.2746 2.4391 36 1 2.0631 1.4694 4.5365 37 1 0.6900 3.7492 2.0776 38 1 2.3752 7.2800 3.4534 39 1 3.5853 8.0830 4.5842 40 1 4.9976 9.4003 5.8714 41 1 4.8656 8.1204 7.1016 42 1 6.1148 8.0153 5.8381 43 1 3.7383 3.5585 5.0992 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492204922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:20 Heat of formation + Delta-G solvation = -27.665335 kcal Electronic energy + Delta-G solvation = -26180.531959 eV Core-core repulsion = 22418.872236 eV Total energy + Delta-G solvation = -3761.659722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76053 -40.84135 -39.86292 -37.13656 -35.86658 -35.27996 -34.80670 -33.37193 -31.93923 -31.29537 -29.52255 -28.01228 -26.04212 -24.84511 -24.35508 -24.13686 -22.62440 -21.45284 -19.73731 -19.16588 -18.84077 -18.16417 -17.92697 -17.62613 -17.03949 -16.45828 -16.38974 -16.30036 -15.69938 -15.37177 -15.03582 -14.80943 -14.66993 -14.49611 -14.41244 -14.14444 -13.88679 -13.72583 -13.66215 -13.37772 -13.23905 -13.14588 -13.02970 -12.54636 -12.38089 -12.06006 -11.94036 -11.76456 -11.49700 -11.28987 -10.87279 -10.84522 -10.73158 -10.32230 -10.21299 -9.37227 -9.29892 -8.36233 -6.41002 -0.52865 -0.06495 0.71825 1.29681 1.33913 1.42038 1.80069 2.11910 2.28191 2.30423 2.49360 2.85317 2.98469 3.30072 3.59731 3.73890 3.79725 3.83162 3.88450 4.14059 4.27939 4.32617 4.44026 4.48048 4.60821 4.61924 4.68112 4.79115 4.87221 4.88435 4.93090 4.96607 5.03164 5.04033 5.20743 5.30016 5.37647 5.41762 5.47072 5.55960 5.67873 6.22453 6.38381 6.60619 6.73877 6.87242 7.06843 7.19982 7.43721 8.80888 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.003754 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.357339 B = 7456.220112 C = 8715.300012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.591 5.591 4 C 0.228 3.772 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.517 3.483 14 O -0.583 6.583 15 C -0.197 4.197 16 C -0.022 4.022 17 C -0.129 4.129 18 C 0.199 3.801 19 N -0.520 5.520 20 C 0.140 3.860 21 C -0.216 4.216 22 C 0.566 3.434 23 O -0.577 6.577 24 N -0.718 5.718 25 C 0.083 3.917 26 C -0.015 4.015 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.176 0.824 36 H 0.186 0.814 37 H 0.145 0.855 38 H 0.187 0.813 39 H 0.416 0.584 40 H 0.116 0.884 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 4.081 17.393 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.320 5.320 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.309 3.691 14 O -0.466 6.466 15 C -0.217 4.217 16 C -0.042 4.042 17 C -0.131 4.131 18 C 0.042 3.958 19 N -0.230 5.230 20 C -0.017 4.017 21 C -0.222 4.222 22 C 0.354 3.646 23 O -0.458 6.458 24 N -0.370 5.370 25 C -0.060 4.060 26 C -0.040 4.040 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.162 0.838 38 H 0.204 0.796 39 H 0.254 0.746 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.094 4.759 17.186 21.547 hybrid contribution 0.822 0.134 -0.863 1.199 sum -11.272 4.892 16.324 20.431 Atomic orbital electron populations 1.22153 0.93762 1.03640 1.02152 1.21839 0.95722 0.81115 1.03975 1.48048 1.62902 1.15221 1.05873 1.19242 0.94535 0.92983 0.82692 1.21563 0.97144 1.31909 1.06617 0.95528 1.25846 0.96666 0.97205 0.98989 1.70052 1.17459 1.46636 1.24490 0.85731 0.80547 0.78922 0.77839 1.20424 1.19955 1.16038 1.19233 0.77890 0.86233 0.85736 1.90778 1.48345 1.19854 1.87574 1.23346 1.05535 1.02605 0.90250 1.22589 0.92052 0.90158 0.99431 1.20100 0.98856 0.96059 0.98109 1.22967 0.94176 0.89066 0.89624 1.67584 1.22483 1.10559 1.22333 1.23356 0.88629 1.01310 0.88416 1.20799 1.02668 0.95343 1.03368 1.18148 0.81765 0.83075 0.81629 1.90734 1.44856 1.69197 1.41028 1.45656 1.42528 1.05446 1.43370 1.21760 0.92329 0.97654 0.94224 1.21882 0.93990 0.93314 0.94832 0.88798 0.91629 0.93780 0.91340 0.88083 0.93588 0.96427 0.92321 0.80701 0.79689 0.83808 0.79635 0.74615 0.86584 0.92314 0.93244 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.24 71.98 0.74 -2.53 16 2 C 0.10 2.64 5.89 86.38 0.51 3.15 16 3 N -0.59 -23.13 2.46 -831.20 -2.04 -25.17 16 4 C 0.23 11.04 4.23 85.63 0.36 11.41 16 5 C -0.53 -31.67 9.94 25.60 0.25 -31.42 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.65 5.47 84.66 0.46 1.11 16 8 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 9 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 13 C 0.52 19.79 6.64 86.37 0.57 20.37 16 14 O -0.58 -27.39 11.66 -4.36 -0.05 -27.44 16 15 C -0.20 -4.97 9.16 23.61 0.22 -4.76 16 16 C -0.02 -0.50 9.84 23.84 0.23 -0.26 16 17 C -0.13 -3.76 4.56 -20.08 -0.09 -3.85 16 18 C 0.20 6.49 7.75 85.12 0.66 7.15 16 19 N -0.52 -16.94 10.33 -193.48 -2.00 -18.94 16 20 C 0.14 3.72 10.71 85.05 0.91 4.63 16 21 C -0.22 -6.07 5.88 -20.03 -0.12 -6.19 16 22 C 0.57 15.33 7.78 86.79 0.68 16.01 16 23 O -0.58 -19.61 16.41 -3.86 -0.06 -19.67 16 24 N -0.72 -13.01 5.67 -487.48 -2.76 -15.77 16 25 C 0.08 1.18 10.70 127.77 1.37 2.54 16 26 C -0.01 -0.42 9.48 23.05 0.22 -0.20 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 31 H 0.10 2.16 6.01 -2.39 -0.01 2.14 16 32 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 33 H 0.02 0.92 6.85 -2.39 -0.02 0.91 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.18 2.93 6.15 -2.91 -0.02 2.91 16 36 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.14 4.71 6.97 -2.91 -0.02 4.69 16 38 H 0.19 3.24 6.40 -2.91 -0.02 3.22 16 39 H 0.42 4.97 6.88 -92.70 -0.64 4.33 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.15 4.05 7.73 -2.91 -0.02 4.02 16 Total: -1.00 -88.21 362.43 2.59 -85.62 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.35 Total: 17.58 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.97 Total: 17.16 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -6.50 Total: -120.24 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -0.11 Total: -47.11 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -88.21 2.59 -85.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492204922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.959 kcal (2) G-P(sol) polarization free energy of solvation -88.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds