Wall clock time and date at job start Fri Apr 10 2020 23:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45198 * 109.46614 * 2 1 4 4 C 1.34657 * 116.99702 * 180.02562 * 3 2 1 5 5 O 1.21513 * 120.00410 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.40205 * 119.99827 * 185.31464 * 6 4 3 8 8 C 1.38835 * 119.99322 * 33.27695 * 7 6 4 9 9 C 1.38072 * 120.00062 * 180.02562 * 8 7 6 10 10 C 1.38881 * 119.99711 * 0.25094 * 9 8 7 11 11 N 1.39915 * 120.00798 * 179.74958 * 10 9 8 12 12 C 1.46499 * 120.00050 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47059 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46680 * 54.99858 * 13 12 11 15 15 C 1.47198 * 109.47255 * 295.00137 * 13 12 11 16 16 N 9.31072 * 159.94773 * 341.33797 * 4 1 2 17 17 C 1.52995 * 109.46967 * 174.99811 * 13 12 11 18 18 C 1.50704 * 109.47125 * 185.00211 * 17 13 12 19 19 H 1.08000 * 120.00033 * 0.02562 * 18 17 13 20 20 C 1.37879 * 120.00268 * 180.02562 * 18 17 13 21 21 N 1.31506 * 120.00010 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99799 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47317 * 89.99845 * 22 20 18 24 24 H 1.48497 * 109.47061 * 210.00181 * 22 20 18 25 25 H 1.48504 * 109.47092 * 330.00246 * 22 20 18 26 26 C 1.38881 * 119.98902 * 359.53568 * 10 9 8 27 27 C 1.38081 * 119.99253 * 0.44325 * 26 10 9 28 28 H 1.08997 * 109.47446 * 60.00265 * 1 2 3 29 29 H 1.09004 * 109.46474 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47212 * 299.99514 * 1 2 3 31 31 H 1.08998 * 109.46890 * 239.99798 * 2 1 3 32 32 H 1.08995 * 109.47024 * 120.00056 * 2 1 3 33 33 H 0.96992 * 120.00090 * 5.30734 * 6 4 3 34 34 H 1.07997 * 120.00447 * 359.97265 * 8 7 6 35 35 H 1.07999 * 120.00503 * 179.97438 * 9 8 7 36 36 H 0.96998 * 119.99553 * 359.97438 * 11 10 9 37 37 H 1.08993 * 109.46981 * 300.00279 * 12 11 10 38 38 H 1.09002 * 109.47129 * 60.00335 * 12 11 10 39 39 H 1.08995 * 109.47548 * 305.00054 * 17 13 12 40 40 H 1.08996 * 109.47106 * 65.00433 * 17 13 12 41 41 H 0.97000 * 119.99931 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.00707 * 180.20615 * 26 10 9 43 43 H 1.07998 * 119.99349 * 179.76754 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3489 1.5455 -0.0005 5 8 4.0892 0.5819 -0.0005 6 7 3.8640 2.7910 0.0000 7 6 5.2491 2.9767 -0.1131 8 6 6.0076 2.0967 -0.8731 9 6 7.3717 2.2792 -0.9841 10 6 7.9857 3.3401 -0.3312 11 7 9.3687 3.5222 -0.4392 12 6 10.0161 4.6417 0.2492 13 6 11.5200 4.6114 -0.0306 14 1 11.6892 4.6068 -1.1075 15 6 12.1053 3.3982 0.5631 16 7 12.5577 2.4644 1.0207 17 6 12.1781 5.8484 0.5838 18 6 13.6362 5.8825 0.2045 19 1 14.0519 5.1003 -0.4134 20 6 14.4397 6.9122 0.6462 21 7 15.7121 6.9416 0.3156 22 14 13.7209 8.2647 1.7156 23 1 13.8465 7.8846 3.1456 24 1 14.4575 9.5312 1.4735 25 1 12.2872 8.4536 1.3777 26 6 7.2260 4.2229 0.4254 27 6 5.8618 4.0402 0.5358 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.2765 3.5587 0.0784 34 1 5.5309 1.2689 -1.3769 35 1 7.9619 1.5944 -1.5750 36 1 9.8988 2.9072 -0.9699 37 1 9.5978 5.5811 -0.1120 38 1 9.8449 4.5564 1.3223 39 1 11.6846 6.7457 0.2106 40 1 12.0859 5.8077 1.6691 41 1 16.2773 7.6662 0.6261 42 1 7.7027 5.0499 0.9306 43 1 5.2716 4.7245 1.1272 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496544350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:29 Heat of formation + Delta-G solvation = -53.758987 kcal Electronic energy + Delta-G solvation = -24537.184485 eV Core-core repulsion = 20774.393257 eV Total energy + Delta-G solvation = -3762.791228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87916 -40.36483 -38.89086 -37.87719 -36.66755 -35.74283 -34.89567 -33.43163 -32.45786 -31.83765 -29.89797 -28.00319 -25.42378 -24.46766 -23.64511 -23.23285 -22.97111 -21.72187 -20.00638 -18.94838 -18.70825 -18.43142 -17.95309 -17.75087 -17.26735 -16.72449 -16.11641 -15.48594 -15.42940 -15.18386 -14.90467 -14.83383 -14.61709 -14.54521 -14.29706 -14.16571 -13.94021 -13.60447 -13.53924 -13.39048 -13.25142 -13.04331 -12.89701 -12.58830 -12.53198 -12.13619 -12.02187 -11.82629 -11.70138 -11.67249 -11.54518 -11.42263 -11.32334 -10.72534 -10.22976 -9.81332 -8.23455 -8.05193 -6.29738 0.51937 0.55797 1.10095 1.46626 1.47273 1.58255 1.70636 1.91520 1.95095 2.42942 2.53834 3.00555 3.11555 3.16680 3.18989 3.90766 4.02254 4.02992 4.09315 4.13815 4.29766 4.35151 4.50258 4.51804 4.59816 4.66225 4.76277 4.84960 4.86492 4.93893 5.05652 5.12652 5.18855 5.24483 5.35461 5.41512 5.43914 5.51027 5.60771 5.64414 5.95788 6.24686 6.34708 6.46034 6.71346 6.79315 6.83961 7.23397 7.35062 8.93281 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.001976 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.701542 B =14167.274034 C =14726.924081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 O -0.368 6.368 4 C 0.642 3.358 5 O -0.594 6.594 6 N -0.631 5.631 7 C 0.076 3.924 8 C -0.084 4.084 9 C -0.190 4.190 10 C 0.206 3.794 11 N -0.748 5.748 12 C 0.139 3.861 13 C 0.015 3.985 14 H 0.126 0.874 15 C 0.247 3.753 16 N -0.505 5.505 17 C -0.002 4.002 18 C -0.533 4.533 19 H 0.028 0.972 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.947 3.053 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.215 1.215 26 C -0.182 4.182 27 C -0.079 4.079 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.429 0.571 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.400 0.600 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.149 0.851 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.286 -4.526 -1.607 34.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 O -0.282 6.282 4 C 0.396 3.604 5 O -0.484 6.484 6 N -0.285 5.285 7 C -0.018 4.018 8 C -0.104 4.104 9 C -0.213 4.213 10 C 0.102 3.898 11 N -0.378 5.378 12 C 0.014 3.986 13 C -0.007 4.007 14 H 0.143 0.857 15 C -0.069 4.069 16 N -0.183 5.183 17 C -0.041 4.041 18 C -0.571 4.571 19 H 0.047 0.953 20 C -0.195 4.195 21 N -0.596 5.596 22 Si 0.770 3.230 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.137 1.137 26 C -0.205 4.205 27 C -0.100 4.100 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.268 0.732 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.235 0.765 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.166 0.834 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -33.162 -6.218 -0.813 33.750 hybrid contribution 0.808 0.403 -0.057 0.905 sum -32.354 -5.815 -0.870 32.884 Atomic orbital electron populations 1.21850 0.89992 1.04550 1.03866 1.23265 0.96683 0.77478 1.02689 1.86256 1.20524 1.34839 1.86538 1.18291 0.81632 0.84366 0.76095 1.91006 1.60429 1.40847 1.56110 1.41776 1.06235 1.05926 1.74550 1.17344 0.81285 1.00210 1.02912 1.20815 0.93607 0.98759 0.97261 1.20545 0.94481 1.00225 1.06050 1.17989 0.83937 0.93682 0.94184 1.44837 1.04171 1.32445 1.56305 1.21480 0.87950 0.91274 0.97916 1.19290 0.93634 0.86090 1.01679 0.85661 1.29575 0.91600 0.93585 0.92174 1.80989 1.10913 1.15004 1.11346 1.19578 0.93725 0.93733 0.97033 1.21402 0.94869 1.08792 1.32031 0.95341 1.26058 0.94851 1.01108 0.97461 1.70089 1.07383 1.34233 1.47857 0.85716 0.81427 0.77424 0.78457 1.20436 1.21885 1.13744 1.20762 0.93371 1.02110 1.04287 1.20843 0.94276 0.97380 0.97503 0.91083 0.87973 0.91104 0.91339 0.91452 0.73175 0.86496 0.85676 0.76547 0.87154 0.91088 0.90897 0.95168 0.92727 0.83364 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 71.98 0.74 -0.22 16 2 C 0.07 0.96 6.19 71.98 0.45 1.41 16 3 O -0.37 -6.31 10.27 -55.66 -0.57 -6.88 16 4 C 0.64 13.85 8.49 129.79 1.10 14.95 16 5 O -0.59 -17.02 13.82 19.80 0.27 -16.75 16 6 N -0.63 -10.69 5.36 -429.28 -2.30 -12.99 16 7 C 0.08 1.55 6.28 38.09 0.24 1.79 16 8 C -0.08 -2.01 8.65 22.37 0.19 -1.82 16 9 C -0.19 -4.41 9.89 22.38 0.22 -4.19 16 10 C 0.21 4.51 6.66 38.16 0.25 4.77 16 11 N -0.75 -16.21 5.53 -339.26 -1.88 -18.09 16 12 C 0.14 2.96 4.28 86.38 0.37 3.33 16 13 C 0.01 0.44 2.26 -12.60 -0.03 0.41 16 14 H 0.13 3.48 8.14 -2.39 -0.02 3.47 16 15 C 0.25 9.29 13.45 89.46 1.20 10.49 16 16 N -0.51 -21.83 18.52 19.98 0.37 -21.46 16 17 C 0.00 -0.06 3.49 29.85 0.10 0.04 16 18 C -0.53 -27.58 9.15 25.60 0.23 -27.35 16 19 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 20 C 0.00 0.10 5.47 84.66 0.46 0.57 16 21 N -0.96 -58.14 13.96 21.45 0.30 -57.85 16 22 Si 0.95 39.80 27.47 68.60 1.88 41.69 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.22 -7.42 6.54 99.48 0.65 -6.77 16 26 C -0.18 -3.37 9.31 22.39 0.21 -3.16 16 27 C -0.08 -1.32 9.96 22.37 0.22 -1.09 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.43 4.22 8.93 -92.71 -0.83 3.40 16 34 H 0.12 3.09 6.41 -2.91 -0.02 3.07 16 35 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.40 8.74 8.23 -92.71 -0.76 7.97 16 37 H 0.11 1.79 7.94 -2.39 -0.02 1.77 16 38 H 0.07 1.49 7.95 -2.39 -0.02 1.47 16 39 H 0.07 2.32 7.20 -2.39 -0.02 2.30 16 40 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.15 2.18 6.73 -2.91 -0.02 2.16 16 43 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -75.59 371.55 3.46 -72.13 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.59 Total: 20.26 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.97 Total: -0.07 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -3.51 Total: -110.38 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.30 Total: -23.63 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.88 Total: 41.69 kcal Total: -75.59 3.46 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496544350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.369 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds