Wall clock time and date at job start Fri Apr 10 2020 23:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35322 * 117.00369 * 2 1 4 4 N 1.32458 * 118.99066 * 179.97438 * 3 2 1 5 5 C 1.32007 * 120.94124 * 180.02562 * 4 3 2 6 6 C 1.40288 * 118.95571 * 359.97438 * 5 4 3 7 7 C 1.47052 * 120.90953 * 179.97438 * 6 5 4 8 8 C 1.34935 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.46278 * 120.00207 * 179.97438 * 8 7 6 10 10 O 1.21716 * 119.99417 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99894 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46921 * 60.00069 * 22 20 18 24 24 H 1.48509 * 109.46925 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47372 * 299.99774 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 C 1.40291 * 118.18249 * 0.25367 * 6 5 4 28 28 N 1.32001 * 118.95507 * 359.48559 * 27 6 5 29 29 H 1.09003 * 109.47045 * 300.00007 * 1 2 3 30 30 H 1.09000 * 109.47415 * 60.00033 * 1 2 3 31 31 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.51875 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99725 * 0.02562 * 7 6 5 34 34 H 1.08000 * 120.00253 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00266 * 0.02562 * 11 9 8 36 36 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 37 37 H 1.09002 * 110.03221 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 39 39 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 40 40 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 42 42 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 43 43 H 1.08004 * 120.52225 * 179.75548 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3672 1.2516 0.0005 5 6 4.0063 2.4067 0.0010 6 6 3.2610 3.5952 0.0005 7 6 3.9286 4.9055 0.0016 8 6 3.1937 6.0371 0.0005 9 6 3.8578 7.3405 0.0022 10 8 5.0733 7.4041 0.0041 11 7 3.1238 8.4708 0.0006 12 6 3.7889 9.7761 0.0017 13 1 4.7111 9.7245 0.5806 14 6 4.0963 10.2123 -1.4415 15 6 3.3348 11.5336 -1.6742 16 6 3.1354 12.1127 -0.2516 17 1 4.0397 12.6155 0.0910 18 6 1.9585 13.0533 -0.2179 19 1 1.1110 12.8356 0.4153 20 6 1.9634 14.1918 -0.9956 21 7 2.9954 14.4571 -1.7664 22 14 0.5042 15.3574 -0.9544 23 1 0.3172 15.8677 0.4275 24 1 0.7550 16.4972 -1.8728 25 1 -0.7193 14.6343 -1.3849 26 6 2.8514 10.8476 0.5957 27 6 1.8613 3.4996 0.0049 28 7 1.3025 2.3038 -0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 5.0859 2.4362 0.0019 33 1 5.0071 4.9619 0.0025 34 1 2.1152 5.9807 -0.0007 35 1 2.1551 8.4201 -0.0012 36 1 5.1675 10.3724 -1.5631 37 1 3.7502 9.4530 -2.1428 38 1 3.9294 12.2144 -2.2834 39 1 2.3713 11.3407 -2.1460 40 1 2.9988 15.2579 -2.3139 41 1 1.8098 10.5439 0.4905 42 1 3.0932 11.0278 1.6432 43 1 1.2507 4.3905 0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493706406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:11 Heat of formation + Delta-G solvation = -13.213544 kcal Electronic energy + Delta-G solvation = -24691.697751 eV Core-core repulsion = 20930.664705 eV Total energy + Delta-G solvation = -3761.033046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67043 -39.69273 -38.84907 -37.16211 -34.81419 -34.27781 -33.68713 -32.01809 -30.39879 -28.22397 -28.01470 -27.08814 -25.46850 -24.61726 -23.79462 -22.06370 -20.12877 -19.55944 -19.29539 -19.12652 -18.35783 -17.12712 -16.86792 -16.56889 -15.84969 -15.46138 -15.11625 -14.98400 -14.77350 -14.55324 -14.45261 -14.11732 -14.03101 -13.74175 -12.66170 -12.57871 -12.48133 -12.36483 -12.05338 -11.80916 -11.63128 -11.46244 -11.16383 -11.05188 -10.94115 -10.68345 -10.62645 -10.34370 -9.98878 -9.73910 -9.66845 -9.54525 -9.24458 -8.85867 -8.80020 -8.54559 -8.38613 -6.02802 -4.06651 -0.05931 0.56322 1.58156 2.09370 3.21683 3.29534 3.35076 3.36107 3.39728 3.48210 3.49768 3.99102 4.15230 4.36240 4.39372 4.42200 4.73461 4.79941 4.86189 5.06093 5.10669 5.18630 5.29078 5.52004 5.59403 5.63623 5.80080 5.91575 5.99935 6.19610 6.29261 6.32026 6.57501 6.63426 6.63492 6.71902 6.87713 6.89792 7.24053 7.30773 7.54645 7.69766 7.76323 7.86273 8.00544 8.38875 8.41863 8.95190 9.57583 11.06177 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.001967 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.677235 B =14233.176729 C =15059.105546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.288 6.288 3 C 0.499 3.501 4 N -0.523 5.523 5 C 0.211 3.789 6 C -0.211 4.211 7 C -0.021 4.021 8 C -0.195 4.195 9 C 0.539 3.461 10 O -0.549 6.549 11 N -0.710 5.710 12 C 0.137 3.863 13 H 0.081 0.919 14 C -0.135 4.135 15 C -0.100 4.100 16 C 0.051 3.949 17 H 0.032 0.968 18 C -0.516 4.516 19 H 0.055 0.945 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.121 4.121 27 C 0.203 3.797 28 N -0.565 5.565 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.399 0.601 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -24.985 3.102 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.189 6.189 3 C 0.199 3.801 4 N -0.247 5.247 5 C 0.044 3.956 6 C -0.216 4.216 7 C -0.042 4.042 8 C -0.216 4.216 9 C 0.327 3.673 10 O -0.429 6.429 11 N -0.359 5.359 12 C 0.034 3.966 13 H 0.099 0.901 14 C -0.173 4.173 15 C -0.138 4.138 16 C 0.033 3.967 17 H 0.050 0.950 18 C -0.554 4.554 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 C -0.159 4.159 27 C 0.037 3.963 28 N -0.294 5.294 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.202 0.798 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.233 0.767 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.850 -26.043 2.969 26.366 hybrid contribution -1.195 1.595 -0.114 1.997 sum -4.045 -24.448 2.855 24.944 Atomic orbital electron populations 1.23054 0.75297 1.03797 1.03103 1.86066 1.23678 1.22703 1.86441 1.20885 0.86247 0.84879 0.88136 1.67573 1.07418 1.30385 1.19366 1.23497 1.00856 0.84824 0.86387 1.20643 0.95536 0.95920 1.09549 1.21935 1.00605 0.88726 0.92970 1.23027 1.00339 0.92762 1.05427 1.18199 0.87281 0.84659 0.77146 1.90811 1.13642 1.87838 1.50603 1.46260 1.10056 1.06178 1.73425 1.21902 0.96519 0.80592 0.97632 0.90113 1.22654 1.00482 0.99355 0.94832 1.22310 0.98198 0.92624 1.00715 1.19548 0.96953 0.90063 0.90183 0.94957 1.21051 1.03010 1.06192 1.25150 0.92709 1.24980 0.95873 0.97667 0.95388 1.69947 1.29411 1.26449 1.26810 0.86698 0.83085 0.80544 0.77866 1.20324 1.21360 1.20350 1.22761 0.97624 0.96327 0.99202 1.23378 0.91869 0.94442 0.86627 1.68052 1.41179 0.99149 1.20976 0.91672 0.91652 0.87666 0.79828 0.83845 0.85549 0.76711 0.92552 0.93207 0.91216 0.93511 0.92980 0.92048 0.92834 0.80517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.35 101.05 1.05 1.30 16 2 O -0.29 -2.83 10.55 -17.66 -0.19 -3.01 16 3 C 0.50 5.29 8.48 -91.00 -0.77 4.52 16 4 N -0.52 -5.52 10.44 -14.33 -0.15 -5.67 16 5 C 0.21 1.69 11.10 -16.71 -0.19 1.50 16 6 C -0.21 -1.67 5.90 -104.78 -0.62 -2.29 16 7 C -0.02 -0.18 9.49 -37.18 -0.35 -0.54 16 8 C -0.19 -1.84 9.43 -37.53 -0.35 -2.20 16 9 C 0.54 7.51 7.73 -13.03 -0.10 7.41 16 10 O -0.55 -9.72 15.90 5.17 0.08 -9.63 16 11 N -0.71 -9.93 4.98 -54.15 -0.27 -10.20 16 12 C 0.14 2.39 3.23 -66.81 -0.22 2.17 16 13 H 0.08 1.49 7.59 -51.93 -0.39 1.10 16 14 C -0.13 -2.55 6.59 -25.61 -0.17 -2.72 16 15 C -0.10 -2.25 5.57 -25.07 -0.14 -2.39 16 16 C 0.05 1.22 2.82 -89.78 -0.25 0.96 16 17 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.52 -13.57 8.54 -34.44 -0.29 -13.86 16 19 H 0.05 1.41 7.78 -52.48 -0.41 1.00 16 20 C 0.06 1.70 5.33 -17.82 -0.10 1.60 16 21 N -0.89 -24.94 12.02 55.43 0.67 -24.27 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.12 -2.30 5.94 -25.07 -0.15 -2.45 16 27 C 0.20 1.60 10.68 -16.71 -0.18 1.42 16 28 N -0.56 -5.37 9.18 -14.33 -0.13 -5.50 16 29 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.14 1.26 7.52 -52.49 -0.39 0.87 16 34 H 0.13 0.80 6.16 -52.49 -0.32 0.48 16 35 H 0.40 4.52 8.33 -40.82 -0.34 4.18 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 38 H 0.07 1.73 7.37 -51.93 -0.38 1.35 16 39 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.06 1.11 7.63 -51.93 -0.40 0.71 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.18 0.91 6.30 -52.48 -0.33 0.58 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -32.72 364.87 -8.23 -40.95 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.89 Total: 1.69 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.83 Total: -5.56 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.12 Total: -45.65 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.10 Total: -12.65 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.72 -8.23 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493706406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.739 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds