Wall clock time and date at job start Fri Apr 10 2020 23:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35322 * 117.00369 * 2 1 4 4 N 1.32458 * 118.99066 * 179.97438 * 3 2 1 5 5 C 1.32007 * 120.94124 * 180.02562 * 4 3 2 6 6 C 1.40288 * 118.95571 * 359.97438 * 5 4 3 7 7 C 1.47052 * 120.90953 * 179.97438 * 6 5 4 8 8 C 1.34935 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.46278 * 120.00207 * 179.97438 * 8 7 6 10 10 O 1.21716 * 119.99417 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00285 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99894 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.01868 * 325.70649 * 12 11 9 14 14 C 1.53873 * 110.03147 * 87.09634 * 12 11 9 15 15 C 1.54269 * 106.59646 * 119.33268 * 14 12 11 16 16 C 1.54882 * 104.19831 * 23.61137 * 15 14 12 17 17 H 1.08994 * 110.75597 * 80.55637 * 16 15 14 18 18 C 1.50702 * 110.75854 * 203.74430 * 16 15 14 19 19 H 1.08003 * 120.00527 * 118.54176 * 18 16 15 20 20 C 1.37878 * 119.99656 * 298.54724 * 18 16 15 21 21 N 1.31514 * 120.00160 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99758 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46921 * 60.00069 * 22 20 18 24 24 H 1.48509 * 109.46925 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47372 * 299.99774 * 22 20 18 26 26 C 1.54273 * 110.07287 * 204.28551 * 12 11 9 27 27 C 1.40291 * 118.18249 * 0.25367 * 6 5 4 28 28 N 1.32001 * 118.95507 * 359.48559 * 27 6 5 29 29 H 1.09003 * 109.47045 * 300.00007 * 1 2 3 30 30 H 1.09000 * 109.47415 * 60.00033 * 1 2 3 31 31 H 1.09005 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.51875 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99725 * 0.02562 * 7 6 5 34 34 H 1.08000 * 120.00253 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00266 * 0.02562 * 11 9 8 36 36 H 1.08996 * 110.03511 * 238.61506 * 14 12 11 37 37 H 1.09002 * 110.03221 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.48429 * 142.29450 * 15 14 12 39 39 H 1.09001 * 110.48672 * 264.92943 * 15 14 12 40 40 H 0.97004 * 120.00181 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.48533 * 335.76640 * 26 12 11 42 42 H 1.08999 * 110.48202 * 98.40568 * 26 12 11 43 43 H 1.08004 * 120.52225 * 179.75548 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 7 3.3672 1.2516 0.0005 5 6 4.0063 2.4067 0.0010 6 6 3.2610 3.5952 0.0005 7 6 3.9286 4.9055 0.0016 8 6 3.1937 6.0371 0.0005 9 6 3.8578 7.3405 0.0022 10 8 5.0733 7.4041 0.0041 11 7 3.1238 8.4708 0.0006 12 6 3.7889 9.7761 0.0017 13 1 4.7111 9.7245 0.5806 14 6 4.0963 10.2123 -1.4415 15 6 3.3348 11.5336 -1.6742 16 6 3.1354 12.1127 -0.2516 17 1 4.0397 12.6155 0.0910 18 6 1.9585 13.0533 -0.2179 19 1 1.1110 12.8356 0.4153 20 6 1.9634 14.1918 -0.9956 21 7 2.9954 14.4571 -1.7664 22 14 0.5042 15.3574 -0.9544 23 1 0.3172 15.8677 0.4275 24 1 0.7550 16.4972 -1.8728 25 1 -0.7193 14.6343 -1.3849 26 6 2.8514 10.8476 0.5957 27 6 1.8613 3.4996 0.0049 28 7 1.3025 2.3038 -0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 5.0859 2.4362 0.0019 33 1 5.0071 4.9619 0.0025 34 1 2.1152 5.9807 -0.0007 35 1 2.1551 8.4201 -0.0012 36 1 5.1675 10.3724 -1.5631 37 1 3.7502 9.4530 -2.1428 38 1 3.9294 12.2144 -2.2834 39 1 2.3713 11.3407 -2.1460 40 1 2.9988 15.2579 -2.3139 41 1 1.8098 10.5439 0.4905 42 1 3.0932 11.0278 1.6432 43 1 1.2507 4.3905 0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493706406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:11 Heat of formation + Delta-G solvation = -36.961322 kcal Electronic energy + Delta-G solvation = -24692.727532 eV Core-core repulsion = 20930.664705 eV Total energy + Delta-G solvation = -3762.062827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31180 -40.86986 -39.50094 -38.67359 -35.57680 -35.24543 -34.93034 -33.75933 -31.17165 -29.93879 -28.90777 -28.27928 -26.24393 -25.82655 -25.05031 -23.02175 -21.47631 -20.86671 -20.56758 -19.89622 -19.21621 -18.47257 -17.95180 -17.49562 -16.86193 -16.64662 -16.50096 -16.10596 -15.79354 -15.48241 -15.44595 -15.05202 -15.03337 -14.65596 -14.37917 -13.97564 -13.62715 -13.26092 -12.99893 -12.91888 -12.75234 -12.65089 -12.52344 -12.43044 -12.33145 -12.12832 -12.08819 -11.63718 -11.37262 -11.35291 -11.08098 -10.88187 -10.79259 -10.43387 -10.33253 -9.98430 -9.35416 -8.07660 -6.18082 -0.74801 -0.02947 0.81612 1.45407 1.46197 1.52403 1.53547 2.30824 2.33622 2.47427 2.73550 2.90789 3.23118 3.39359 3.59847 3.62564 3.77851 3.94983 4.06824 4.23938 4.24213 4.31049 4.37714 4.38970 4.61952 4.70842 4.72879 4.81668 4.94624 5.02994 5.06006 5.10105 5.19494 5.21512 5.32368 5.34637 5.44122 5.57109 5.68818 5.72763 5.96954 6.02393 6.02628 6.39571 6.70380 6.90218 6.92822 7.34964 7.49721 9.00430 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.001967 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.677235 B =14233.176729 C =15059.105546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.306 6.306 3 C 0.486 3.514 4 N -0.551 5.551 5 C 0.212 3.788 6 C -0.212 4.212 7 C 0.001 3.999 8 C -0.202 4.202 9 C 0.538 3.462 10 O -0.593 6.593 11 N -0.703 5.703 12 C 0.151 3.849 13 H 0.070 0.930 14 C -0.124 4.124 15 C -0.089 4.089 16 C 0.038 3.962 17 H -0.002 1.002 18 C -0.528 4.528 19 H 0.060 0.940 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.268 1.268 26 C -0.107 4.107 27 C 0.204 3.796 28 N -0.573 5.573 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.211 0.789 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.415 0.585 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 -26.478 3.657 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.185 3.815 4 N -0.276 5.276 5 C 0.046 3.954 6 C -0.217 4.217 7 C -0.020 4.020 8 C -0.223 4.223 9 C 0.329 3.671 10 O -0.475 6.475 11 N -0.353 5.353 12 C 0.046 3.954 13 H 0.088 0.912 14 C -0.163 4.163 15 C -0.128 4.128 16 C 0.019 3.981 17 H 0.017 0.983 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.189 4.189 21 N -0.560 5.560 22 Si 0.779 3.221 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.193 1.193 26 C -0.145 4.145 27 C 0.039 3.961 28 N -0.302 5.302 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.148 0.852 32 H 0.228 0.772 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.252 0.748 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.727 -27.557 3.537 28.183 hybrid contribution -0.588 2.003 -0.279 2.106 sum -5.315 -25.554 3.257 26.304 Atomic orbital electron populations 1.23292 0.73552 1.05545 1.03147 1.86047 1.25509 1.22888 1.86313 1.21155 0.86591 0.85440 0.88322 1.67617 1.07774 1.31587 1.20643 1.23998 1.02137 0.84279 0.84961 1.20562 0.95681 0.95394 1.10052 1.21915 1.00473 0.88764 0.90887 1.22918 1.01932 0.90257 1.07175 1.18826 0.86789 0.85813 0.75716 1.90798 1.15693 1.88491 1.52564 1.46038 1.10880 1.04906 1.73502 1.21455 0.96036 0.82040 0.95906 0.91159 1.22527 0.99534 0.97736 0.96496 1.22072 0.97583 0.93746 0.99386 1.19547 0.94868 0.91765 0.91901 0.98336 1.21465 1.03726 1.06728 1.24712 0.92181 1.25788 0.98394 0.99471 0.95255 1.70098 1.31295 1.26889 1.27706 0.85687 0.80120 0.78384 0.77889 1.19705 1.21606 1.19309 1.22556 0.98826 0.94347 0.98725 1.23907 0.92232 0.94840 0.85152 1.68124 1.41138 0.99386 1.21591 0.91539 0.91593 0.85155 0.77214 0.84240 0.81975 0.74802 0.93244 0.91803 0.94510 0.94272 0.93255 0.90503 0.92096 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.35 113.37 1.17 1.58 16 2 O -0.31 -5.77 10.55 -86.10 -0.91 -6.68 16 3 C 0.49 9.75 8.48 180.48 1.53 11.28 16 4 N -0.55 -10.99 10.44 -312.20 -3.26 -14.25 16 5 C 0.21 2.97 11.10 85.17 0.95 3.92 16 6 C -0.21 -2.79 5.90 -19.97 -0.12 -2.90 16 7 C 0.00 0.01 9.49 23.82 0.23 0.24 16 8 C -0.20 -3.16 9.43 23.60 0.22 -2.94 16 9 C 0.54 13.79 7.73 86.33 0.67 14.46 16 10 O -0.59 -20.32 15.90 -4.40 -0.07 -20.39 16 11 N -0.70 -17.94 4.98 -443.45 -2.21 -20.15 16 12 C 0.15 5.08 3.23 45.72 0.15 5.23 16 13 H 0.07 2.56 7.59 -2.39 -0.02 2.54 16 14 C -0.12 -4.67 6.59 31.32 0.21 -4.47 16 15 C -0.09 -4.10 5.57 31.67 0.18 -3.92 16 16 C 0.04 1.83 2.82 -10.25 -0.03 1.80 16 17 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 18 C -0.53 -27.81 8.54 25.60 0.22 -27.59 16 19 H 0.06 3.02 7.78 -2.91 -0.02 3.00 16 20 C 0.01 0.52 5.33 84.65 0.45 0.97 16 21 N -0.92 -52.99 12.02 21.45 0.26 -52.73 16 22 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C -0.11 -3.92 5.94 31.67 0.19 -3.73 16 27 C 0.20 2.61 10.68 85.17 0.91 3.52 16 28 N -0.57 -9.78 9.18 -312.19 -2.87 -12.64 16 29 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.14 2.17 7.52 -2.91 -0.02 2.14 16 34 H 0.16 1.28 6.16 -2.91 -0.02 1.27 16 35 H 0.41 7.96 8.33 -92.71 -0.77 7.19 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 38 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 39 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 40 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.08 2.58 7.63 -2.39 -0.02 2.57 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.21 1.23 6.30 -2.91 -0.02 1.22 16 Total: -1.00 -72.49 364.87 0.15 -72.34 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.27 Total: 12.58 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 6.92 Total: -2.55 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -8.08 Total: -99.77 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.98 Total: -27.07 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.49 0.15 -72.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493706406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.375 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds