Wall clock time and date at job start Fri Apr 10 2020 23:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21276 * 119.99789 * 2 1 4 4 N 1.34772 * 120.00234 * 180.02562 * 2 1 3 5 5 C 1.39457 * 120.00287 * 175.37628 * 4 2 1 6 6 C 1.39374 * 120.39616 * 35.04837 * 5 4 2 7 7 C 1.38285 * 118.43303 * 179.97438 * 6 5 4 8 8 C 1.39487 * 119.14785 * 0.27992 * 7 6 5 9 9 C 1.47912 * 119.64290 * 179.70134 * 8 7 6 10 10 O 1.21545 * 120.00123 * 10.05493 * 9 8 7 11 11 N 1.34781 * 119.99772 * 190.05524 * 9 8 7 12 12 C 1.46923 * 120.63241 * 7.45596 * 11 9 8 13 13 C 1.53619 * 108.54708 * 126.36810 * 12 11 9 14 14 C 1.53048 * 109.23707 * 54.85533 * 13 12 11 15 15 C 1.50699 * 109.44571 * 178.50098 * 14 13 12 16 16 H 1.07999 * 119.99920 * 120.06050 * 15 14 13 17 17 C 1.37880 * 120.00065 * 300.05996 * 15 14 13 18 18 N 1.31515 * 119.99837 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47548 * 60.00334 * 19 17 15 21 21 H 1.48503 * 109.47159 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47380 * 299.99943 * 19 17 15 23 23 C 1.53036 * 109.53935 * 298.51315 * 14 13 12 24 24 C 1.46924 * 120.62819 * 187.73671 * 11 9 8 25 25 N 1.32818 * 120.70942 * 359.42025 * 8 7 6 26 26 C 1.31350 * 121.71327 * 0.59497 * 25 8 7 27 27 H 1.08997 * 109.47234 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47381 * 299.99604 * 1 2 3 29 29 H 1.09001 * 109.47279 * 59.99948 * 1 2 3 30 30 H 0.97003 * 119.99907 * 355.37073 * 4 2 1 31 31 H 1.08002 * 120.78328 * 359.96160 * 6 5 4 32 32 H 1.07999 * 120.42586 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.58797 * 246.20632 * 12 11 9 34 34 H 1.09001 * 109.58717 * 6.62618 * 12 11 9 35 35 H 1.08997 * 109.63202 * 294.87223 * 13 12 11 36 36 H 1.08991 * 109.43758 * 174.72403 * 13 12 11 37 37 H 1.08996 * 109.45982 * 58.53519 * 14 13 12 38 38 H 0.97004 * 119.99925 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.49969 * 301.41404 * 23 14 13 40 40 H 1.08997 * 109.49977 * 181.31905 * 23 14 13 41 41 H 1.08998 * 109.58926 * 353.37265 * 24 11 9 42 42 H 1.09001 * 109.58552 * 113.65691 * 24 11 9 43 43 H 1.07997 * 119.60607 * 179.67616 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5721 -1.1691 -0.0979 6 6 4.3224 -0.1591 0.5018 7 6 5.6992 -0.2012 0.3802 8 6 6.2863 -1.2425 -0.3386 9 6 7.7576 -1.2945 -0.4812 10 8 8.4583 -0.5462 0.1718 11 7 8.3213 -2.1718 -1.3352 12 6 7.4895 -2.9674 -2.2484 13 6 8.0059 -2.7652 -3.6810 14 6 9.4972 -3.1053 -3.7322 15 6 10.0004 -2.9439 -5.1435 16 1 10.7914 -2.2404 -5.3576 17 6 9.4510 -3.6944 -6.1613 18 7 8.4875 -4.5507 -5.9006 19 14 10.0753 -3.4949 -7.9106 20 1 11.5218 -3.8267 -7.9609 21 1 9.3260 -4.4078 -8.8107 22 1 9.8739 -2.0910 -8.3510 23 6 10.2691 -2.1638 -2.8049 24 6 9.7787 -2.3551 -1.3663 25 7 5.5387 -2.1908 -0.8916 26 6 4.2287 -2.1812 -0.7955 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6983 -2.0059 0.0669 31 1 3.8398 0.6376 1.0484 32 1 6.3119 0.5647 0.8324 33 1 7.5558 -4.0214 -1.9784 34 1 6.4534 -2.6355 -2.1817 35 1 7.8590 -1.7274 -3.9801 36 1 7.4598 -3.4206 -4.3593 37 1 9.6460 -4.1356 -3.4092 38 1 8.1012 -5.0790 -6.6167 39 1 10.1008 -1.1317 -3.1124 40 1 11.3336 -2.3912 -2.8597 41 1 10.2535 -1.6191 -0.7175 42 1 10.0280 -3.3593 -1.0236 43 1 3.6537 -2.9668 -1.2630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541154571.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:36 Heat of formation + Delta-G solvation = -18.045740 kcal Electronic energy + Delta-G solvation = -26276.290949 eV Core-core repulsion = 22515.048364 eV Total energy + Delta-G solvation = -3761.242586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24759 -40.03917 -38.69459 -36.71891 -35.50264 -33.52375 -32.51018 -31.55530 -30.97436 -29.95238 -29.10978 -26.27511 -24.64225 -23.79406 -22.69923 -22.12090 -21.16889 -20.27220 -18.79393 -18.25035 -17.57971 -16.89523 -16.61014 -16.20714 -15.75704 -15.23681 -15.02117 -14.71859 -14.50214 -14.48948 -13.76332 -13.69045 -13.63132 -13.19114 -12.94728 -12.85482 -12.70316 -12.64530 -12.23429 -12.17131 -11.49912 -11.26469 -11.17503 -10.88834 -10.63517 -10.52071 -10.28921 -10.04007 -9.93056 -9.80012 -9.61371 -9.18270 -9.08725 -8.64178 -8.47624 -8.25766 -7.86068 -5.96535 -4.02478 0.50883 1.10461 2.06091 2.54671 2.95292 3.33259 3.37345 3.40883 3.43740 3.86143 4.16466 4.25949 4.45534 4.57496 4.61089 4.76403 4.86514 4.91529 4.99273 5.30370 5.32995 5.44239 5.66320 5.76045 5.89975 5.95966 6.03652 6.10955 6.22273 6.39044 6.40662 6.56950 6.73514 6.83044 6.91847 7.02063 7.13404 7.27731 7.42882 7.57231 7.64521 7.74165 8.00580 8.02850 8.13725 8.47970 8.54722 9.00508 9.61705 11.08624 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.003154 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.633979 B = 8874.845371 C =10064.823625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.524 6.524 4 N -0.667 5.667 5 C 0.105 3.895 6 C -0.086 4.086 7 C -0.093 4.093 8 C 0.073 3.927 9 C 0.562 3.438 10 O -0.555 6.555 11 N -0.575 5.575 12 C 0.072 3.928 13 C -0.123 4.123 14 C 0.047 3.953 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.122 4.122 24 C 0.109 3.891 25 N -0.419 5.419 26 C 0.073 3.927 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.416 0.584 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.102 0.898 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.727 3.406 13.561 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.399 6.399 4 N -0.314 5.314 5 C 0.008 3.992 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.065 4.065 9 C 0.349 3.651 10 O -0.434 6.434 11 N -0.305 5.305 12 C -0.049 4.049 13 C -0.162 4.162 14 C 0.029 3.971 15 C -0.550 4.550 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.161 4.161 24 C -0.013 4.013 25 N -0.130 5.130 26 C -0.089 4.089 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.252 0.748 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.052 0.948 36 H 0.120 0.880 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.652 3.762 13.328 21.658 hybrid contribution -0.398 0.154 -0.743 0.856 sum -17.050 3.917 12.585 21.551 Atomic orbital electron populations 1.21858 0.90247 1.04786 1.05913 1.21125 0.91079 0.83020 0.74910 1.90760 1.70369 1.31270 1.47482 1.43516 1.04700 1.10366 1.72782 1.19000 0.83780 0.98291 0.98167 1.21687 0.93016 0.98889 0.97814 1.22029 0.94519 0.98037 0.96822 1.21313 0.94663 0.92826 0.97698 1.17792 0.85770 0.80938 0.80637 1.90728 1.62526 1.41978 1.48196 1.48146 1.08093 1.38629 1.35595 1.23249 0.97212 0.94410 0.90031 1.22102 1.00376 1.00570 0.93138 1.18661 0.91065 0.94000 0.93418 1.21188 1.19169 1.22103 0.92499 0.92858 1.24953 0.95065 0.95164 0.98788 1.69844 1.25830 1.24961 1.32380 0.86695 0.78932 0.77899 0.84671 1.20349 1.21348 1.20399 1.21997 0.99848 1.01147 0.93061 1.21778 0.79229 1.00938 0.99371 1.67881 1.05513 1.24262 1.15325 1.22896 0.90889 0.98324 0.96755 0.90103 0.88228 0.88079 0.74757 0.82901 0.83134 0.92480 0.85480 0.94780 0.87965 0.95535 0.93034 0.92967 0.92179 0.90364 0.91967 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.39 36.01 0.37 -0.18 16 2 C 0.51 4.02 7.79 -10.99 -0.09 3.93 16 3 O -0.52 -6.58 14.56 5.56 0.08 -6.50 16 4 N -0.67 -4.51 5.33 -9.74 -0.05 -4.56 16 5 C 0.10 1.09 6.32 -83.55 -0.53 0.56 16 6 C -0.09 -1.05 8.79 -39.14 -0.34 -1.40 16 7 C -0.09 -1.30 9.62 -39.10 -0.38 -1.68 16 8 C 0.07 1.18 6.57 -83.01 -0.55 0.64 16 9 C 0.56 10.81 7.64 -12.30 -0.09 10.71 16 10 O -0.55 -11.61 15.79 5.33 0.08 -11.53 16 11 N -0.58 -11.34 2.97 -173.60 -0.51 -11.86 16 12 C 0.07 1.44 5.90 -3.49 -0.02 1.41 16 13 C -0.12 -2.90 5.17 -26.38 -0.14 -3.04 16 14 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 15 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.96 11.30 55.43 0.63 -24.33 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.12 -2.64 5.30 -26.62 -0.14 -2.78 16 24 C 0.11 2.11 6.44 -3.71 -0.02 2.09 16 25 N -0.42 -6.21 6.12 -9.64 -0.06 -6.27 16 26 C 0.07 0.82 11.12 -17.34 -0.19 0.62 16 27 H 0.08 0.05 7.92 -51.93 -0.41 -0.36 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.42 1.18 8.66 -40.82 -0.35 0.83 16 31 H 0.15 1.81 6.31 -52.49 -0.33 1.48 16 32 H 0.15 2.03 7.67 -52.49 -0.40 1.63 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.13 2.36 4.03 -84.11 -0.34 2.02 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -34.10 350.77 -8.12 -42.22 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.86 Total: 2.13 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.69 Total: -0.88 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.00 Total: -47.02 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.10 -8.12 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541154571.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.178 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds