Wall clock time and date at job start Fri Apr 10 2020 23:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47204 * 2 1 4 4 C 1.50700 * 109.46937 * 239.99999 * 2 1 3 5 5 H 1.08000 * 119.99808 * 239.99907 * 4 2 1 6 6 C 1.37874 * 120.00317 * 60.00161 * 4 2 1 7 7 N 1.31512 * 119.99771 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00155 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47489 * 89.99621 * 8 6 4 10 10 H 1.48502 * 109.46980 * 209.99783 * 8 6 4 11 11 H 1.48501 * 109.47082 * 329.99309 * 8 6 4 12 12 N 1.46503 * 109.47236 * 119.99867 * 2 1 3 13 13 C 1.46505 * 119.99847 * 60.00043 * 12 2 1 14 14 C 1.34774 * 119.99839 * 239.99916 * 12 2 1 15 15 O 1.21614 * 120.00398 * 4.58282 * 14 12 2 16 16 C 1.47249 * 119.99538 * 184.58179 * 14 12 2 17 17 C 1.38032 * 126.81749 * 322.36773 * 16 14 12 18 18 N 1.34099 * 107.87877 * 180.02562 * 17 16 14 19 19 C 1.46497 * 125.16057 * 179.97438 * 18 17 16 20 20 N 1.39773 * 109.68255 * 359.74930 * 18 17 16 21 21 C 1.31342 * 109.09142 * 0.42953 * 20 18 17 22 22 C 1.48379 * 126.50957 * 179.84555 * 21 20 18 23 23 C 1.40886 * 126.22715 * 144.71384 * 22 21 20 24 24 N 1.30657 * 108.09365 * 179.73651 * 23 22 21 25 25 N 1.40005 * 108.53799 * 0.22560 * 24 23 22 26 26 C 1.46508 * 125.88840 * 180.02562 * 25 24 23 27 27 C 1.34811 * 108.22590 * 0.02562 * 25 24 23 28 28 H 1.08998 * 109.47208 * 299.99832 * 1 2 3 29 29 H 1.08997 * 109.47373 * 60.00121 * 1 2 3 30 30 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00285 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47040 * 264.78938 * 13 12 2 33 33 H 1.08996 * 109.47277 * 24.78671 * 13 12 2 34 34 H 1.08997 * 109.46731 * 144.78820 * 13 12 2 35 35 H 1.07998 * 126.06280 * 359.96147 * 17 16 14 36 36 H 1.09000 * 109.47141 * 89.99810 * 19 18 17 37 37 H 1.08997 * 109.47222 * 209.99809 * 19 18 17 38 38 H 1.09002 * 109.46748 * 329.99859 * 19 18 17 39 39 H 1.08007 * 125.94885 * 0.02562 * 23 22 21 40 40 H 1.08999 * 109.47122 * 89.97766 * 26 25 24 41 41 H 1.08998 * 109.47220 * 209.98205 * 26 25 24 42 42 H 1.09006 * 109.46626 * 329.97743 * 26 25 24 43 43 H 1.08006 * 126.20067 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4864 -0.1414 -5.1122 11 1 3.6292 -1.7583 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0185 1.1503 1.9348 16 6 3.3670 -0.7558 3.2323 17 6 2.7589 -1.7488 3.9735 18 7 3.6194 -2.1371 4.9260 19 6 3.3583 -3.1745 5.9268 20 7 4.8052 -1.4054 4.8157 21 6 4.6970 -0.5600 3.8164 22 6 5.7278 0.4054 3.3612 23 6 5.9772 0.7909 2.0292 24 7 6.9537 1.6589 2.0341 25 7 7.3668 1.8568 3.3571 26 6 8.4381 2.7541 3.7972 27 6 6.6089 1.0794 4.1562 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7081 1.1608 -3.4844 32 1 0.7900 -2.1448 2.0767 33 1 1.4392 -2.5733 0.4758 34 1 2.5008 -2.6050 1.9041 35 1 1.7658 -2.1426 3.8152 36 1 3.6771 -4.1420 5.5390 37 1 3.9120 -2.9479 6.8379 38 1 2.2914 -3.2053 6.1482 39 1 5.4496 0.4347 1.1567 40 1 8.0236 3.7407 4.0041 41 1 8.8969 2.3557 4.7021 42 1 9.1908 2.8333 3.0128 43 1 6.6826 1.0065 5.2313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646656208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:32:42 Heat of formation + Delta-G solvation = 109.654228 kcal Electronic energy + Delta-G solvation = -26768.870463 eV Core-core repulsion = 23045.458115 eV Total energy + Delta-G solvation = -3723.412348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.37494 -41.72595 -40.07665 -36.98111 -34.84957 -34.78071 -33.77187 -32.24977 -31.10366 -30.30131 -28.32292 -27.63009 -27.25102 -26.77289 -24.30079 -22.78175 -22.49997 -21.58873 -20.62743 -19.99453 -18.43110 -18.10945 -17.64148 -17.27177 -16.73657 -16.50721 -16.29117 -15.93280 -15.72996 -15.42023 -15.18298 -14.66452 -14.33113 -14.11250 -13.96013 -13.77950 -13.54417 -13.49714 -13.34849 -13.25198 -13.15997 -12.97658 -12.75634 -12.67750 -12.51647 -12.14294 -12.10205 -11.87603 -11.81880 -11.12654 -10.74522 -10.63828 -10.45062 -10.41036 -9.67103 -9.21753 -8.98804 -8.09903 -6.25766 0.60375 0.75863 1.05930 1.42100 1.44819 1.49138 1.54301 1.68137 1.96773 2.31757 2.50079 2.70464 3.18006 3.38474 3.57275 3.84167 3.91688 4.21173 4.23967 4.30271 4.45382 4.52268 4.53074 4.56201 4.62817 4.68178 4.72358 4.76749 4.81308 4.85700 4.97598 4.98298 5.08165 5.15308 5.34117 5.52531 5.55349 5.71744 5.75175 6.02649 6.06821 6.14277 6.23239 6.56933 6.65843 6.82831 6.97522 7.39870 7.63723 8.94279 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.004601 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.957889 B = 6083.885031 C = 7792.548374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.597 5.597 13 C 0.079 3.921 14 C 0.576 3.424 15 O -0.598 6.598 16 C -0.306 4.306 17 C 0.119 3.881 18 N -0.361 5.361 19 C 0.088 3.912 20 N -0.306 5.306 21 C 0.191 3.809 22 C -0.193 4.193 23 C 0.082 3.918 24 N -0.330 5.330 25 N -0.371 5.371 26 C 0.091 3.909 27 C 0.103 3.897 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.222 0.778 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -8.719 20.687 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.573 4.573 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.327 5.327 13 C -0.064 4.064 14 C 0.366 3.634 15 O -0.480 6.480 16 C -0.321 4.321 17 C -0.031 4.031 18 N -0.140 5.140 19 C -0.051 4.051 20 N -0.128 5.128 21 C 0.023 3.977 22 C -0.206 4.206 23 C -0.105 4.105 24 N -0.152 5.152 25 N -0.151 5.151 26 C -0.048 4.048 27 C -0.048 4.048 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.171 0.829 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.025 -7.729 20.860 24.007 hybrid contribution -1.021 -0.137 -1.618 1.918 sum 8.003 -7.866 19.242 22.275 Atomic orbital electron populations 1.21855 0.97036 1.00165 0.99807 1.18485 0.91657 0.92065 0.81412 0.97583 1.21573 1.31641 1.12930 0.91148 0.92270 1.25685 0.95143 0.95609 1.01850 1.70030 1.37444 1.23884 1.24258 0.85512 0.78816 0.78329 0.78694 1.19009 1.21308 1.19848 1.48045 1.49331 1.13164 1.22139 1.21993 1.00601 0.80961 1.02809 1.17729 0.77926 0.85789 0.81972 1.90700 1.62551 1.17434 1.77318 1.21230 0.97737 1.07951 1.05216 1.23464 0.97561 0.93374 0.88675 1.48455 1.09515 1.30444 1.25575 1.22416 1.05228 0.87611 0.89829 1.77164 1.04903 1.09651 1.21085 1.20839 0.91247 0.93319 0.92256 1.17845 1.03026 1.07112 0.92650 1.23608 0.94459 0.94770 0.97624 1.77210 1.17584 1.20994 0.99399 1.48792 1.28918 1.33936 1.03494 1.22329 0.87055 0.92671 1.02699 1.22936 0.91158 0.91921 0.98763 0.96209 0.91579 0.93196 0.92756 0.90571 0.91161 0.90513 0.76179 0.88816 0.88388 0.86003 0.82920 0.89509 0.85555 0.88859 0.76578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.97 71.98 0.65 -5.74 16 2 C 0.27 14.29 2.63 44.24 0.12 14.41 16 3 H 0.01 0.40 6.91 -2.39 -0.02 0.38 16 4 C -0.53 -29.79 7.95 25.60 0.20 -29.59 16 5 H 0.06 3.22 7.42 -2.91 -0.02 3.20 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.60 -26.41 2.75 -830.89 -2.29 -28.69 16 13 C 0.08 2.49 7.99 127.77 1.02 3.51 16 14 C 0.58 26.36 7.05 86.61 0.61 26.97 16 15 O -0.60 -33.14 15.03 -4.08 -0.06 -33.20 16 16 C -0.31 -11.00 5.54 -18.78 -0.10 -11.10 16 17 C 0.12 2.89 9.17 84.30 0.77 3.67 16 18 N -0.36 -7.78 3.95 -367.93 -1.45 -9.24 16 19 C 0.09 0.79 11.39 127.77 1.46 2.25 16 20 N -0.31 -8.90 12.50 -44.49 -0.56 -9.45 16 21 C 0.19 6.72 7.27 44.10 0.32 7.04 16 22 C -0.19 -6.98 5.82 -20.34 -0.12 -7.09 16 23 C 0.08 3.45 10.61 85.52 0.91 4.36 16 24 N -0.33 -12.75 12.54 -56.43 -0.71 -13.46 16 25 N -0.37 -10.41 4.00 -368.66 -1.48 -11.88 16 26 C 0.09 1.39 11.46 127.77 1.46 2.85 16 27 C 0.10 2.83 11.45 83.82 0.96 3.79 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 30 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 31 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 32 H 0.08 1.82 7.34 -2.39 -0.02 1.81 16 33 H 0.07 2.40 7.10 -2.39 -0.02 2.38 16 34 H 0.08 2.08 5.91 -2.39 -0.01 2.07 16 35 H 0.22 3.50 6.31 -2.91 -0.02 3.48 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.35 8.13 -2.39 -0.02 0.33 16 39 H 0.15 7.21 7.72 -2.91 -0.02 7.19 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.22 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -87.30 361.35 5.46 -81.84 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.03 Total: 14.99 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 8.70 Total: 16.69 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -6.24 Total: -126.62 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.06 Total: -33.20 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -87.30 5.46 -81.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646656208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.497 kcal (2) G-P(sol) polarization free energy of solvation -87.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds