Wall clock time and date at job start Fri Apr 10 2020 23:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.52999 * 109.46820 * 240.00606 * 2 1 3 5 5 C 1.53003 * 109.46986 * 175.00028 * 4 2 1 6 6 C 1.52999 * 109.46986 * 180.02562 * 5 4 2 7 7 N 1.46508 * 109.46912 * 180.02562 * 6 5 4 8 8 C 1.36934 * 119.99644 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00378 * 359.97438 * 8 7 6 10 10 C 1.38813 * 119.99691 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00251 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47284 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47478 * 119.99966 * 12 10 8 15 15 H 1.48502 * 109.47399 * 239.99728 * 12 10 8 16 16 N 1.46497 * 109.47311 * 120.00475 * 2 1 3 17 17 C 1.34783 * 119.99779 * 274.99823 * 16 2 1 18 18 O 1.21688 * 119.99923 * 0.02562 * 17 16 2 19 19 C 1.46809 * 119.99841 * 180.02562 * 17 16 2 20 20 C 1.40416 * 126.54152 * 359.95283 * 19 17 16 21 21 N 1.30977 * 108.76622 * 179.97438 * 20 19 17 22 22 N 1.39715 * 109.48655 * 0.04457 * 21 20 19 23 23 C 1.36352 * 133.18889 * 179.97438 * 22 21 20 24 24 C 1.35293 * 119.80509 * 180.02562 * 23 22 21 25 25 N 1.33239 * 121.27546 * 359.97427 * 24 23 22 26 26 C 1.31414 * 121.07823 * 0.02657 * 25 24 23 27 27 C 1.36825 * 107.96909 * 359.97220 * 22 21 20 28 28 H 1.08994 * 109.47538 * 59.99297 * 1 2 3 29 29 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46825 * 299.99244 * 1 2 3 31 31 H 1.09003 * 109.46868 * 294.99557 * 4 2 1 32 32 H 1.08993 * 109.47695 * 54.99927 * 4 2 1 33 33 H 1.09003 * 109.46933 * 299.99489 * 5 4 2 34 34 H 1.09000 * 109.47514 * 59.99871 * 5 4 2 35 35 H 1.08998 * 109.47183 * 299.99179 * 6 5 4 36 36 H 1.08993 * 109.47695 * 59.99899 * 6 5 4 37 37 H 0.97002 * 119.99785 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00140 * 180.02562 * 11 10 8 39 39 H 0.96994 * 120.00398 * 94.99610 * 16 2 1 40 40 H 1.08002 * 125.61577 * 0.07847 * 20 19 17 41 41 H 1.07998 * 120.09653 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.36148 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.17870 * 179.72771 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0746 -1.3338 -2.5635 7 7 5.5348 -1.2309 -2.6249 8 6 6.2184 -1.8042 -3.6636 9 1 5.6813 -2.3326 -4.4374 10 6 7.6019 -1.7063 -3.7221 11 7 8.2565 -1.0620 -2.7794 12 14 8.5345 -2.4890 -5.1387 13 1 7.5742 -3.1497 -6.0587 14 1 9.2859 -1.4414 -5.8756 15 1 9.4852 -3.4988 -4.6077 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8573 1.1622 2.4119 19 6 2.6371 -0.7104 3.5556 20 6 3.0081 -2.0615 3.6479 21 7 3.3923 -2.3100 4.8752 22 7 3.2917 -1.1451 5.6400 23 6 3.5587 -0.8606 6.9465 24 6 3.3581 0.3921 7.4165 25 7 2.9024 1.3628 6.6258 26 6 2.6312 1.1357 5.3602 27 6 2.8238 -0.1471 4.8294 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 3.7864 -2.3840 -2.5203 36 1 3.6400 -0.8738 -3.4509 37 1 6.0172 -0.7560 -1.9301 38 1 9.2231 -0.9933 -2.8204 39 1 2.2490 -1.6318 1.1525 40 1 2.9827 -2.7773 2.8396 41 1 3.9291 -1.6330 7.6042 42 1 3.5724 0.6096 8.4525 43 1 2.2583 1.9323 4.7334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755502589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:41 Heat of formation + Delta-G solvation = 82.731899 kcal Electronic energy + Delta-G solvation = -25369.991604 eV Core-core repulsion = 21645.411816 eV Total energy + Delta-G solvation = -3724.579788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.87941 -39.76887 -38.61033 -36.70565 -34.81814 -34.05793 -32.59775 -31.74177 -31.27707 -29.66295 -29.12852 -25.69618 -25.22729 -24.50938 -23.09001 -22.81214 -21.10367 -20.75675 -20.47778 -18.87278 -17.81578 -17.13732 -16.97990 -16.51044 -16.36042 -15.75333 -15.44552 -14.85020 -14.66361 -14.52542 -14.06320 -13.90453 -13.66416 -13.47968 -13.41211 -13.33435 -12.96822 -12.67481 -12.17462 -12.08830 -11.60192 -11.33863 -11.26281 -11.11919 -10.86090 -10.78960 -10.44325 -10.42322 -10.38318 -10.26042 -9.99887 -9.95746 -9.67661 -9.12120 -8.85613 -8.29540 -6.89657 -5.74621 -3.03250 -0.03132 0.39540 1.48297 1.74005 2.83375 3.08259 3.34215 3.44076 3.49378 3.51933 3.66196 3.76298 3.83394 4.33598 4.51412 4.56578 4.60558 4.77261 4.90820 4.98915 5.04872 5.14760 5.19093 5.44895 5.58640 5.59447 5.65773 5.70644 5.76882 5.82525 5.98949 6.01918 6.09574 6.14671 6.23461 6.37917 6.43270 6.51040 6.83593 6.88992 6.92136 7.15370 7.47582 7.71749 8.19469 8.44452 9.55266 10.14676 10.48775 11.48418 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.002640 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.705919 B =10602.532672 C =11914.310877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.292 1.292 16 N -0.715 5.715 17 C 0.599 3.401 18 O -0.548 6.548 19 C -0.273 4.273 20 C 0.117 3.883 21 N -0.301 5.301 22 N -0.248 5.248 23 C 0.065 3.935 24 C 0.027 3.973 25 N -0.444 5.444 26 C 0.169 3.831 27 C 0.094 3.906 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.399 0.601 40 H 0.206 0.794 41 H 0.183 0.817 42 H 0.187 0.813 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 0.258 19.719 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.366 5.366 17 C 0.387 3.613 18 O -0.427 6.427 19 C -0.291 4.291 20 C -0.062 4.062 21 N -0.124 5.124 22 N -0.016 5.016 23 C -0.064 4.064 24 C -0.115 4.115 25 N -0.155 5.155 26 C -0.011 4.011 27 C -0.029 4.029 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.233 0.767 40 H 0.222 0.778 41 H 0.200 0.800 42 H 0.204 0.796 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -16.326 0.749 20.855 26.496 hybrid contribution 0.880 -1.188 -1.396 2.033 sum -15.446 -0.439 19.459 24.848 Atomic orbital electron populations 1.22177 0.95428 1.01987 1.02450 1.21049 0.93569 0.97863 0.83540 0.89104 1.21857 0.96869 1.00783 0.96636 1.21737 0.93652 1.01515 0.99478 1.20653 0.86153 0.96434 0.94259 1.42400 1.00241 1.66275 1.28981 1.19287 0.89442 1.26993 1.01211 0.91162 1.24758 0.96480 1.01296 0.98666 1.69675 1.07112 1.47095 1.34371 0.86117 0.79902 0.78495 0.81694 1.20562 1.21865 1.21897 1.45811 1.67471 1.13962 1.09368 1.16812 0.76867 0.85836 0.81801 1.90767 1.51579 1.15287 1.85077 1.19822 1.20863 0.94520 0.93880 1.24283 0.92075 0.95228 0.94591 1.77735 1.29040 1.01293 1.04295 1.46244 1.38662 1.08538 1.08119 1.22684 1.01134 1.00254 0.82370 1.22476 1.00326 0.87017 1.01634 1.68288 1.09143 1.33738 1.04378 1.23377 0.93354 0.93197 0.91131 1.20403 0.99105 0.91503 0.91876 0.91545 0.92573 0.92242 0.91415 0.90212 0.91911 0.92037 0.96587 0.96504 0.78337 0.93592 0.76684 0.77770 0.80010 0.79600 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.14 1.56 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.51 16 5 C -0.13 -1.94 5.22 -26.73 -0.14 -2.08 16 6 C 0.15 3.02 6.26 -4.04 -0.03 3.00 16 7 N -0.74 -18.96 5.60 -59.91 -0.34 -19.30 16 8 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 9 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 10 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 11 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 12 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 N -0.72 -7.50 4.52 -55.07 -0.25 -7.75 16 17 C 0.60 7.48 7.76 -12.79 -0.10 7.38 16 18 O -0.55 -8.28 15.47 5.20 0.08 -8.20 16 19 C -0.27 -3.13 6.16 -104.75 -0.65 -3.77 16 20 C 0.12 1.17 11.44 -17.10 -0.20 0.97 16 21 N -0.30 -3.39 12.60 30.76 0.39 -3.00 16 22 N -0.25 -2.63 3.91 -10.51 -0.04 -2.67 16 23 C 0.06 0.46 11.24 -16.59 -0.19 0.28 16 24 C 0.03 0.18 11.07 -17.99 -0.20 -0.02 16 25 N -0.44 -4.26 10.44 -13.26 -0.14 -4.40 16 26 C 0.17 1.77 10.98 -17.01 -0.19 1.59 16 27 C 0.09 1.08 6.77 -84.06 -0.57 0.51 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.96 7.75 -51.93 -0.40 0.55 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.40 3.32 7.52 -40.82 -0.31 3.01 16 40 H 0.21 1.29 7.46 -52.49 -0.39 0.90 16 41 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.19 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.20 1.98 7.21 -52.48 -0.38 1.60 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -36.24 368.25 -7.45 -43.68 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.96 Total: 7.41 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.44 Total: -0.94 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: 0.35 Total: -65.13 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.24 -7.45 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755502589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.415 kcal (2) G-P(sol) polarization free energy of solvation -36.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds