Wall clock time and date at job start Fri Apr 10 2020 23:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47001 * 2 1 4 4 C 1.52999 * 109.46820 * 240.00606 * 2 1 3 5 5 C 1.53003 * 109.46986 * 175.00028 * 4 2 1 6 6 C 1.52999 * 109.46986 * 180.02562 * 5 4 2 7 7 N 1.46508 * 109.46912 * 180.02562 * 6 5 4 8 8 C 1.36934 * 119.99644 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00378 * 359.97438 * 8 7 6 10 10 C 1.38813 * 119.99691 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00251 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47284 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47478 * 119.99966 * 12 10 8 15 15 H 1.48502 * 109.47399 * 239.99728 * 12 10 8 16 16 N 1.46497 * 109.47311 * 120.00475 * 2 1 3 17 17 C 1.34783 * 119.99779 * 274.99823 * 16 2 1 18 18 O 1.21688 * 119.99923 * 0.02562 * 17 16 2 19 19 C 1.46809 * 119.99841 * 180.02562 * 17 16 2 20 20 C 1.40416 * 126.54152 * 359.95283 * 19 17 16 21 21 N 1.30977 * 108.76622 * 179.97438 * 20 19 17 22 22 N 1.39715 * 109.48655 * 0.04457 * 21 20 19 23 23 C 1.36352 * 133.18889 * 179.97438 * 22 21 20 24 24 C 1.35293 * 119.80509 * 180.02562 * 23 22 21 25 25 N 1.33239 * 121.27546 * 359.97427 * 24 23 22 26 26 C 1.31414 * 121.07823 * 0.02657 * 25 24 23 27 27 C 1.36825 * 107.96909 * 359.97220 * 22 21 20 28 28 H 1.08994 * 109.47538 * 59.99297 * 1 2 3 29 29 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46825 * 299.99244 * 1 2 3 31 31 H 1.09003 * 109.46868 * 294.99557 * 4 2 1 32 32 H 1.08993 * 109.47695 * 54.99927 * 4 2 1 33 33 H 1.09003 * 109.46933 * 299.99489 * 5 4 2 34 34 H 1.09000 * 109.47514 * 59.99871 * 5 4 2 35 35 H 1.08998 * 109.47183 * 299.99179 * 6 5 4 36 36 H 1.08993 * 109.47695 * 59.99899 * 6 5 4 37 37 H 0.97002 * 119.99785 * 359.97438 * 7 6 5 38 38 H 0.96993 * 120.00140 * 180.02562 * 11 10 8 39 39 H 0.96994 * 120.00398 * 94.99610 * 16 2 1 40 40 H 1.08002 * 125.61577 * 0.07847 * 20 19 17 41 41 H 1.07998 * 120.09653 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.36148 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.17870 * 179.72771 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0746 -1.3338 -2.5635 7 7 5.5348 -1.2309 -2.6249 8 6 6.2184 -1.8042 -3.6636 9 1 5.6813 -2.3326 -4.4374 10 6 7.6019 -1.7063 -3.7221 11 7 8.2565 -1.0620 -2.7794 12 14 8.5345 -2.4890 -5.1387 13 1 7.5742 -3.1497 -6.0587 14 1 9.2859 -1.4414 -5.8756 15 1 9.4852 -3.4988 -4.6077 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8573 1.1622 2.4119 19 6 2.6371 -0.7104 3.5556 20 6 3.0081 -2.0615 3.6479 21 7 3.3923 -2.3100 4.8752 22 7 3.2917 -1.1451 5.6400 23 6 3.5587 -0.8606 6.9465 24 6 3.3581 0.3921 7.4165 25 7 2.9024 1.3628 6.6258 26 6 2.6312 1.1357 5.3602 27 6 2.8238 -0.1471 4.8294 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0728 -0.4262 35 1 3.7864 -2.3840 -2.5203 36 1 3.6400 -0.8738 -3.4509 37 1 6.0172 -0.7560 -1.9301 38 1 9.2231 -0.9933 -2.8204 39 1 2.2490 -1.6318 1.1525 40 1 2.9827 -2.7773 2.8396 41 1 3.9291 -1.6330 7.6042 42 1 3.5724 0.6096 8.4525 43 1 2.2583 1.9323 4.7334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755502589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:40 Heat of formation + Delta-G solvation = 56.677374 kcal Electronic energy + Delta-G solvation = -25371.121413 eV Core-core repulsion = 21645.411816 eV Total energy + Delta-G solvation = -3725.709597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.61845 -40.68175 -39.34555 -37.86902 -36.45949 -34.80765 -34.13367 -32.63641 -32.45965 -31.01721 -30.00788 -27.20445 -25.94556 -25.42964 -24.61080 -23.72637 -22.39669 -21.86044 -21.37586 -19.64629 -19.11012 -18.49380 -17.91775 -17.31472 -17.22522 -16.66453 -16.46239 -16.12218 -15.87072 -15.67751 -15.32747 -15.27283 -14.88782 -14.60524 -14.32296 -14.08780 -14.06057 -13.77027 -13.39543 -13.15038 -12.96847 -12.79868 -12.41751 -12.34005 -12.19362 -12.05412 -11.98887 -11.82425 -11.66959 -11.44452 -11.12937 -11.01843 -10.96010 -10.93014 -10.04891 -9.01783 -8.99290 -7.95299 -5.24338 -0.74974 -0.32424 0.80087 0.94273 1.47183 1.48299 1.58535 2.10476 2.24657 2.48816 2.56193 2.93830 3.10331 3.21192 3.38657 3.63834 3.69030 3.82579 3.99168 4.04536 4.17004 4.25745 4.33564 4.35206 4.45685 4.50485 4.64923 4.74734 4.88454 4.91703 4.97815 5.02361 5.04014 5.08377 5.19994 5.33758 5.38395 5.42766 5.46932 5.53600 5.65598 6.08572 6.27504 6.46859 6.63359 7.30455 7.32866 8.11006 8.32421 9.28755 Molecular weight = 317.16amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.002640 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.705919 B =10602.532672 C =11914.310877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.243 4.243 9 H 0.078 0.922 10 C -0.081 4.081 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.264 1.264 14 H -0.294 1.294 15 H -0.293 1.293 16 N -0.707 5.707 17 C 0.597 3.403 18 O -0.584 6.584 19 C -0.299 4.299 20 C 0.126 3.874 21 N -0.324 5.324 22 N -0.253 5.253 23 C 0.067 3.933 24 C 0.031 3.969 25 N -0.451 5.451 26 C 0.146 3.854 27 C 0.081 3.919 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.371 0.629 38 H 0.250 0.750 39 H 0.411 0.589 40 H 0.235 0.765 41 H 0.221 0.779 42 H 0.230 0.770 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.365 -1.422 20.206 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.375 4.375 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.220 1.220 16 N -0.358 5.358 17 C 0.386 3.614 18 O -0.466 6.466 19 C -0.317 4.317 20 C -0.053 4.053 21 N -0.147 5.147 22 N -0.020 5.020 23 C -0.061 4.061 24 C -0.112 4.112 25 N -0.163 5.163 26 C -0.032 4.032 27 C -0.042 4.042 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.202 0.798 38 H 0.059 0.941 39 H 0.247 0.753 40 H 0.251 0.749 41 H 0.237 0.763 42 H 0.246 0.754 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.201 -0.966 21.300 27.395 hybrid contribution 1.111 -0.644 -1.393 1.895 sum -16.090 -1.610 19.907 25.647 Atomic orbital electron populations 1.22097 0.93800 1.03021 1.02314 1.20967 0.94726 0.96598 0.83460 0.91567 1.21755 0.93406 1.02381 0.97163 1.21601 0.96614 0.99659 0.97268 1.20877 0.83009 0.97512 0.96276 1.42687 1.02669 1.65926 1.28093 1.19718 0.89978 1.26139 1.01667 0.90414 1.25626 0.97593 1.02567 1.01461 1.69838 1.06998 1.49027 1.36493 0.85045 0.78477 0.77337 0.78752 1.18770 1.22141 1.21983 1.45742 1.66894 1.14454 1.08733 1.17012 0.76432 0.85480 0.82500 1.90739 1.53340 1.16818 1.85684 1.19793 1.22825 0.95377 0.93707 1.24741 0.90587 0.95025 0.94951 1.77678 1.30300 1.01849 1.04877 1.46546 1.38218 1.08126 1.09079 1.23506 0.99646 1.01478 0.81512 1.23236 0.98780 0.86245 1.02916 1.68280 1.08739 1.35106 1.04137 1.23241 0.95142 0.93037 0.91753 1.20567 0.99301 0.92003 0.92368 0.90352 0.90887 0.93737 0.89141 0.89091 0.93704 0.92297 0.95460 0.96269 0.79759 0.94078 0.75280 0.74864 0.76277 0.75380 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.48 71.98 0.68 -1.99 16 2 C 0.15 3.08 2.57 44.99 0.12 3.20 16 3 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 4 C -0.11 -2.23 4.75 30.59 0.15 -2.08 16 5 C -0.11 -3.42 5.22 30.59 0.16 -3.26 16 6 C 0.15 5.76 6.26 86.38 0.54 6.30 16 7 N -0.75 -38.85 5.60 -343.45 -1.92 -40.78 16 8 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 11 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 12 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 N -0.71 -14.51 4.52 -446.36 -2.02 -16.53 16 17 C 0.60 15.39 7.76 86.48 0.67 16.07 16 18 O -0.58 -18.73 15.47 -4.31 -0.07 -18.80 16 19 C -0.30 -7.01 6.16 -19.95 -0.12 -7.13 16 20 C 0.13 2.41 11.44 85.35 0.98 3.39 16 21 N -0.32 -7.01 12.60 -56.58 -0.71 -7.72 16 22 N -0.25 -5.13 3.91 -187.15 -0.73 -5.86 16 23 C 0.07 0.82 11.24 83.31 0.94 1.75 16 24 C 0.03 0.34 11.07 83.80 0.93 1.27 16 25 N -0.45 -8.41 10.44 -195.86 -2.05 -10.46 16 26 C 0.15 3.21 10.98 85.22 0.94 4.15 16 27 C 0.08 1.90 6.77 39.39 0.27 2.17 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.37 20.65 7.67 -92.71 -0.71 19.94 16 38 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.41 6.27 7.52 -92.71 -0.70 5.57 16 40 H 0.24 2.58 7.46 -2.91 -0.02 2.56 16 41 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.23 0.42 8.06 -2.91 -0.02 0.40 16 43 H 0.19 4.26 7.21 -2.91 -0.02 4.24 16 Total: -1.00 -79.95 368.25 1.99 -77.96 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.36 Total: 27.47 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.54 Total: 6.67 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -7.15 Total: -141.84 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.07 Total: -18.80 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.95 1.99 -77.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755502589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.633 kcal (2) G-P(sol) polarization free energy of solvation -79.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds