Wall clock time and date at job start Fri Apr 10 2020 23:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42911 * 113.99712 * 2 1 4 4 C 1.52995 * 109.46958 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46949 * 65.00416 * 4 3 2 6 6 C 1.36715 * 120.00147 * 84.98335 * 5 4 3 7 7 H 1.08007 * 119.99836 * 223.12172 * 6 5 4 8 8 C 1.39123 * 120.00352 * 43.11737 * 6 5 4 9 9 N 1.31321 * 119.99456 * 7.89106 * 8 6 5 10 10 Si 1.86799 * 120.00031 * 187.89490 * 8 6 5 11 11 H 1.48495 * 109.47472 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47189 * 120.00081 * 10 8 6 13 13 H 1.48508 * 109.46734 * 239.99813 * 10 8 6 14 14 C 1.34779 * 120.00065 * 264.70218 * 5 4 3 15 15 O 1.21758 * 120.00086 * 0.02562 * 14 5 4 16 16 C 1.46235 * 120.00046 * 179.97438 * 14 5 4 17 17 C 1.34978 * 119.99596 * 172.16288 * 16 14 5 18 18 C 1.47143 * 120.00116 * 349.19032 * 17 16 14 19 19 C 1.39893 * 120.17655 * 315.93559 * 18 17 16 20 20 C 1.37856 * 119.82463 * 179.72085 * 19 18 17 21 21 C 1.50698 * 119.91233 * 180.27277 * 20 19 18 22 22 C 1.38432 * 120.17366 * 0.55415 * 20 19 18 23 23 C 1.50697 * 119.82458 * 179.69432 * 22 20 19 24 24 C 1.38391 * 120.35050 * 359.71915 * 22 20 19 25 25 C 1.37900 * 120.17734 * 0.02562 * 24 22 20 26 26 C 1.50702 * 120.09011 * 180.02562 * 25 24 22 27 27 H 1.08996 * 109.46838 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47766 * 299.99578 * 1 2 3 29 29 H 1.08996 * 109.47178 * 60.00415 * 1 2 3 30 30 H 1.09003 * 109.46693 * 59.99757 * 3 2 1 31 31 H 1.08995 * 109.47016 * 300.00418 * 3 2 1 32 32 H 1.08994 * 109.47548 * 305.00159 * 4 3 2 33 33 H 1.09002 * 109.46815 * 184.99842 * 4 3 2 34 34 H 0.97006 * 119.99227 * 179.97438 * 9 8 6 35 35 H 1.08000 * 119.99762 * 352.16059 * 16 14 5 36 36 H 1.07996 * 119.99630 * 169.18668 * 17 16 14 37 37 H 1.08006 * 120.08418 * 359.97044 * 19 18 17 38 38 H 1.09008 * 109.47002 * 270.27807 * 21 20 19 39 39 H 1.08993 * 109.47262 * 30.27961 * 21 20 19 40 40 H 1.08994 * 109.47092 * 150.28253 * 21 20 19 41 41 H 1.08996 * 109.47686 * 270.02133 * 23 22 20 42 42 H 1.08996 * 109.46970 * 30.02414 * 23 22 20 43 43 H 1.09007 * 109.46852 * 150.02037 * 23 22 20 44 44 H 1.08000 * 119.91420 * 180.02562 * 24 22 20 45 45 H 1.09004 * 109.46664 * 269.97410 * 26 25 24 46 46 H 1.09002 * 109.47255 * 29.97612 * 26 25 24 47 47 H 1.09004 * 109.46812 * 149.97716 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9765 0.5642 -1.2509 6 6 4.1685 1.3334 -2.3648 7 1 3.8168 0.9888 -3.3261 8 6 4.8169 2.5598 -2.2600 9 7 5.3805 2.9098 -1.1267 10 14 4.8857 3.7086 -3.7314 11 1 4.1808 3.0848 -4.8799 12 1 4.2288 4.9949 -3.3863 13 1 6.3029 3.9592 -4.0978 14 6 4.1986 -0.7641 -1.3028 15 8 4.0321 -1.4485 -0.3096 16 6 4.6385 -1.3837 -2.5522 17 6 5.0127 -2.6805 -2.5673 18 6 5.2074 -3.4047 -1.3013 19 6 5.8968 -2.8007 -0.2445 20 6 6.0701 -3.4837 0.9404 21 6 6.8071 -2.8326 2.0823 22 6 5.5740 -4.7683 1.0820 23 6 5.7739 -5.5103 2.3783 24 6 4.8958 -5.3749 0.0392 25 6 4.7097 -4.7030 -1.1505 26 6 3.9704 -5.3653 -2.2846 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3635 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6884 1.8464 0.8900 31 1 1.6884 1.8465 -0.8899 32 1 3.8507 0.5687 0.8426 33 1 3.9782 2.1768 0.0902 34 1 5.8329 3.7648 -1.0538 35 1 4.6638 -0.8036 -3.4629 36 1 5.1690 -3.1864 -3.5085 37 1 6.2887 -1.8004 -0.3552 38 1 7.8709 -3.0570 2.0031 39 1 6.6593 -1.7535 2.0418 40 1 6.4242 -3.2166 3.0278 41 1 6.7081 -6.0702 2.3362 42 1 5.8141 -4.7979 3.2022 43 1 4.9439 -6.1996 2.5341 44 1 4.5114 -6.3772 0.1575 45 1 4.6781 -5.9065 -2.9126 46 1 3.2354 -6.0620 -1.8815 47 1 3.4630 -4.6061 -2.8800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837235273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:03 Heat of formation + Delta-G solvation = -34.488341 kcal Electronic energy + Delta-G solvation = -27649.715177 eV Core-core repulsion = 23991.299930 eV Total energy + Delta-G solvation = -3658.415247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.41813 -38.32635 -36.89800 -34.99204 -34.17046 -32.43757 -31.54535 -30.78875 -29.15961 -28.69243 -26.50001 -25.73318 -24.85802 -24.40709 -22.85292 -21.65742 -20.39382 -19.35451 -18.47466 -16.47857 -16.32272 -15.64149 -15.39086 -15.23595 -14.74847 -14.51794 -14.39167 -14.10891 -13.95242 -13.73298 -13.26631 -12.98288 -12.87641 -12.70558 -12.42860 -12.35895 -12.20120 -11.90010 -11.69756 -11.67208 -11.48277 -11.39463 -11.29412 -11.11662 -11.00635 -10.77044 -10.45469 -10.38168 -10.35505 -10.17944 -10.13514 -9.19882 -8.98958 -8.93090 -8.38248 -7.78665 -7.33419 -7.14000 -6.33518 -4.15689 1.54484 2.11829 2.65672 3.08976 3.17809 3.20498 4.05718 4.40959 4.53739 4.60439 4.89726 5.11747 5.23888 5.29885 5.44990 5.49977 5.57447 5.65299 5.69286 5.75688 5.79202 5.87126 5.93230 5.95863 5.98412 6.02222 6.05028 6.11364 6.15896 6.20446 6.21875 6.36601 6.37531 6.40607 6.48615 6.76492 6.80659 6.88432 6.96439 7.06066 7.22651 7.25013 7.30691 7.43365 7.50216 7.73132 7.92896 8.02760 8.41070 9.08474 9.59615 10.06774 10.63558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.004473 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.377834 B = 6258.799446 C = 6630.413414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.370 6.370 3 C 0.052 3.948 4 C 0.108 3.892 5 N -0.429 5.429 6 C -0.330 4.330 7 H 0.086 0.914 8 C 0.041 3.959 9 N -0.870 5.870 10 Si 0.917 3.083 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.498 3.502 15 O -0.569 6.569 16 C -0.145 4.145 17 C -0.093 4.093 18 C -0.039 4.039 19 C -0.019 4.019 20 C -0.106 4.106 21 C -0.109 4.109 22 C -0.089 4.089 23 C -0.111 4.111 24 C -0.136 4.136 25 C -0.084 4.084 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.270 0.730 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -8.846 1.100 9.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.016 4.016 5 N -0.147 5.147 6 C -0.459 4.459 7 H 0.104 0.896 8 C -0.163 4.163 9 N -0.507 5.507 10 Si 0.744 3.256 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.289 3.711 15 O -0.454 6.454 16 C -0.166 4.166 17 C -0.114 4.114 18 C -0.039 4.039 19 C -0.038 4.038 20 C -0.106 4.106 21 C -0.165 4.165 22 C -0.089 4.089 23 C -0.167 4.167 24 C -0.154 4.154 25 C -0.084 4.084 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.160 -9.120 1.689 9.347 hybrid contribution -0.410 1.253 -0.899 1.596 sum -1.570 -7.866 0.790 8.060 Atomic orbital electron populations 1.22603 0.83522 1.01532 0.98769 1.88145 1.17397 1.28253 1.95061 1.23096 0.96711 0.84151 0.98629 1.21658 0.89264 1.02593 0.88045 1.43169 1.56652 1.04969 1.09915 1.19445 1.36454 1.01591 0.88366 0.89631 1.25517 0.94394 0.98878 0.97560 1.69629 1.33417 1.22566 1.25136 0.86017 0.78180 0.80012 0.81414 1.19230 1.20628 1.20571 1.18348 0.81164 0.83361 0.88256 1.90752 1.55913 1.62044 1.36702 1.23342 0.99072 0.94462 0.99679 1.22046 0.99653 0.93906 0.95767 1.18629 0.98391 0.92723 0.94130 1.20934 0.94536 0.96966 0.91316 1.19424 1.01338 0.94094 0.95727 1.20744 0.98741 1.00839 0.96216 1.19583 0.99363 0.94432 0.95558 1.20781 1.01225 0.99552 0.95151 1.20477 1.02432 0.99260 0.93259 1.19801 0.99331 0.93846 0.95431 1.20704 0.99076 1.00064 0.96576 0.90701 0.95210 0.95023 0.94599 0.93542 0.91835 0.85648 0.91982 0.85439 0.86323 0.86836 0.92249 0.91695 0.91937 0.91986 0.91565 0.92366 0.87303 0.91960 0.92287 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.67 16 2 O -0.37 -8.18 10.19 -35.23 -0.36 -8.54 16 3 C 0.05 1.10 6.25 37.15 0.23 1.33 16 4 C 0.11 2.60 5.50 -4.05 -0.02 2.58 16 5 N -0.43 -10.73 2.46 -116.47 -0.29 -11.02 16 6 C -0.33 -8.18 8.32 -15.05 -0.13 -8.30 16 7 H 0.09 2.06 6.89 -52.48 -0.36 1.69 16 8 C 0.04 1.01 5.26 -17.44 -0.09 0.92 16 9 N -0.87 -22.19 11.01 55.50 0.61 -21.58 16 10 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 16 11 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 C 0.50 12.22 6.34 -13.05 -0.08 12.14 16 15 O -0.57 -14.79 11.52 5.14 0.06 -14.73 16 16 C -0.14 -3.07 9.19 -37.53 -0.35 -3.41 16 17 C -0.09 -1.74 8.37 -37.13 -0.31 -2.05 16 18 C -0.04 -0.76 4.52 -105.06 -0.47 -1.23 16 19 C -0.02 -0.40 6.28 -39.10 -0.25 -0.64 16 20 C -0.11 -1.96 5.87 -104.69 -0.61 -2.57 16 21 C -0.11 -1.72 9.59 36.00 0.35 -1.38 16 22 C -0.09 -1.50 5.89 -104.50 -0.62 -2.12 16 23 C -0.11 -1.43 9.59 36.00 0.35 -1.09 16 24 C -0.14 -2.27 9.33 -39.65 -0.37 -2.64 16 25 C -0.08 -1.47 5.92 -104.14 -0.62 -2.09 16 26 C -0.11 -1.51 9.56 36.01 0.34 -1.17 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.60 7.27 -51.93 -0.38 1.23 16 33 H 0.13 3.14 5.35 -51.93 -0.28 2.86 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.13 2.55 6.59 -52.49 -0.35 2.20 16 36 H 0.12 1.81 7.91 -52.49 -0.42 1.39 16 37 H 0.11 2.56 7.06 -52.48 -0.37 2.18 16 38 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 39 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.06 0.88 5.93 -51.93 -0.31 0.57 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.82 5.93 -51.93 -0.31 0.52 16 43 H 0.06 0.68 8.08 -51.92 -0.42 0.26 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 47 H 0.06 0.95 7.06 -51.93 -0.37 0.58 16 LS Contribution 378.58 15.07 5.71 5.71 Total: -1.00 -29.58 378.58 -8.16 -37.74 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.33 Total: 8.56 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.53 Total: -10.07 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.32 Total: -32.60 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.30 Total: -23.26 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.58 -8.16 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837235273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.253 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds