Wall clock time and date at job start Fri Apr 10 2020 23:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48490 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47179 * 300.00534 * 3 2 1 6 6 H 1.48508 * 109.46725 * 59.99955 * 3 2 1 7 7 C 1.37877 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47028 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47252 * 180.02562 * 12 11 10 14 14 O 1.20829 * 119.99634 * 359.97438 * 13 12 11 15 15 O 1.34226 * 120.00125 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99955 * 179.97438 * 15 13 12 17 17 H 1.09006 * 110.63122 * 328.34697 * 16 15 13 18 18 C 1.55143 * 110.70909 * 91.45052 * 16 15 13 19 19 C 1.54907 * 101.68966 * 154.01697 * 18 16 15 20 20 N 1.47887 * 104.77499 * 322.98307 * 19 18 16 21 21 C 1.39674 * 111.01637 * 146.32837 * 20 19 18 22 22 C 1.38910 * 120.07707 * 202.66313 * 21 20 19 23 23 C 1.38108 * 119.92781 * 179.77253 * 22 21 20 24 24 C 1.38281 * 120.07201 * 0.50419 * 23 22 21 25 25 C 1.38288 * 120.15332 * 359.74892 * 24 23 22 26 26 C 1.38111 * 120.07106 * 359.97438 * 25 24 23 27 27 C 1.47445 * 108.58806 * 24.03753 * 20 19 18 28 28 H 0.96998 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47084 * 60.00809 * 9 7 2 30 30 H 1.08997 * 109.47510 * 300.00621 * 9 7 2 31 31 H 1.09000 * 109.46731 * 60.00243 * 10 9 7 32 32 H 1.08997 * 109.47113 * 300.00514 * 10 9 7 33 33 H 1.09001 * 109.46661 * 59.99845 * 11 10 9 34 34 H 1.08999 * 109.46996 * 300.00214 * 11 10 9 35 35 H 1.09001 * 109.47579 * 60.00342 * 12 11 10 36 36 H 1.09009 * 109.47211 * 300.00008 * 12 11 10 37 37 H 1.08994 * 110.98929 * 272.13134 * 18 16 15 38 38 H 1.09002 * 110.98654 * 35.91024 * 18 16 15 39 39 H 1.09002 * 110.37224 * 81.77893 * 19 18 16 40 40 H 1.09000 * 110.37430 * 204.12114 * 19 18 16 41 41 H 1.08008 * 120.03492 * 0.02562 * 22 21 20 42 42 H 1.07995 * 119.96470 * 180.25654 * 23 22 21 43 43 H 1.08000 * 119.92736 * 179.76768 * 24 23 22 44 44 H 1.07991 * 119.97029 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.03556 * 179.97438 * 26 25 24 46 46 H 1.08995 * 109.89098 * 239.63884 * 27 20 19 47 47 H 1.09002 * 109.88947 * 118.44953 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0026 15 8 2.3921 -8.6175 -0.0010 16 6 1.6013 -9.8353 -0.0017 17 1 0.6632 -9.6844 0.5326 18 6 1.3348 -10.3155 -1.4527 19 6 1.1326 -11.8376 -1.2474 20 7 2.0967 -12.2066 -0.1885 21 6 1.5890 -13.2284 0.6173 22 6 2.0771 -13.4067 1.9055 23 6 1.5696 -14.4150 2.7012 24 6 0.5839 -15.2531 2.2131 25 6 0.0994 -15.0818 0.9293 26 6 0.5986 -14.0718 0.1303 27 6 2.4002 -11.0051 0.6104 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8904 33 1 0.8539 -5.0445 -0.8914 34 1 0.8532 -5.0451 0.8886 35 1 3.1004 -6.0924 0.8899 36 1 3.1018 -6.0922 -0.8901 37 1 0.4348 -9.8532 -1.8579 38 1 2.1946 -10.1188 -2.0931 39 1 0.1134 -12.0443 -0.9210 40 1 1.3541 -12.3774 -2.1680 41 1 2.8498 -12.7549 2.2859 42 1 1.9457 -14.5515 3.7043 43 1 0.1914 -16.0432 2.8361 44 1 -0.6706 -15.7378 0.5512 45 1 0.2201 -13.9388 -0.8724 46 1 3.4675 -10.7892 0.5647 47 1 2.0952 -11.1611 1.6452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851188081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:35 Heat of formation + Delta-G solvation = -69.025835 kcal Electronic energy + Delta-G solvation = -25050.298219 eV Core-core repulsion = 21390.385314 eV Total energy + Delta-G solvation = -3659.912905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.15957 -40.25148 -38.10581 -36.43864 -35.00689 -32.78870 -32.49244 -31.67976 -30.03155 -29.27282 -28.49393 -25.94109 -23.58955 -23.49594 -22.63403 -21.18608 -20.95873 -20.51945 -20.05653 -18.22959 -17.85396 -16.54288 -16.39629 -16.20415 -16.01714 -15.72549 -15.09700 -14.87595 -14.63604 -14.42835 -14.24067 -13.85723 -13.54926 -13.42653 -13.12439 -12.76221 -12.61072 -12.54637 -12.15322 -12.08915 -11.80743 -11.77292 -11.67031 -11.28620 -11.26696 -11.03732 -10.72763 -10.61843 -10.54790 -10.48972 -10.39310 -10.22582 -9.67545 -9.31631 -9.30702 -9.02666 -8.33452 -8.26084 -5.98056 -4.00629 0.99151 1.01513 2.20944 2.46643 3.18406 3.31824 3.39209 3.43205 3.56178 3.95293 4.07122 4.45221 4.48135 4.50900 4.57390 4.59200 4.73359 4.77861 4.94364 5.00001 5.06185 5.11534 5.18765 5.23393 5.27222 5.32566 5.37644 5.39016 5.44594 5.57100 5.58150 5.73629 5.76893 6.02436 6.02560 6.16569 6.19055 6.32378 6.36053 6.44688 6.45490 6.73943 6.83532 6.92004 7.13979 7.70597 7.74483 7.84927 8.02659 8.44462 9.07149 9.63395 11.13284 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038192 B = 0.001671 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.954035 B =16756.250947 C =16849.393358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.503 6.503 15 O -0.349 6.349 16 C 0.068 3.932 17 H 0.095 0.905 18 C -0.148 4.148 19 C 0.040 3.960 20 N -0.471 5.471 21 C 0.108 3.892 22 C -0.156 4.156 23 C -0.091 4.091 24 C -0.151 4.151 25 C -0.092 4.092 26 C -0.163 4.163 27 C 0.043 3.957 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 -32.223 1.304 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.390 6.390 15 O -0.265 6.265 16 C 0.012 3.988 17 H 0.113 0.887 18 C -0.186 4.186 19 C -0.086 4.086 20 N -0.185 5.185 21 C 0.010 3.990 22 C -0.177 4.177 23 C -0.110 4.110 24 C -0.170 4.170 25 C -0.110 4.110 26 C -0.184 4.184 27 C -0.082 4.082 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.120 0.880 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.499 -32.236 1.022 32.441 hybrid contribution -0.292 1.062 0.259 1.131 sum 3.207 -31.174 1.281 31.365 Atomic orbital electron populations 1.69983 1.06060 1.26440 1.50964 1.25044 0.94848 0.99283 0.95407 0.86544 0.80095 0.83849 0.77555 1.19746 1.21040 1.21049 1.21314 0.93070 0.91128 1.50386 0.92615 1.19105 0.94042 0.91264 0.97371 1.21652 0.99151 0.93518 1.00444 1.21580 0.97080 0.92710 1.03228 1.21626 0.99948 0.87715 1.05590 1.24291 0.87704 0.85926 0.71742 1.90669 1.15689 1.87660 1.44958 1.86585 1.41255 1.14505 1.84202 1.23860 0.95066 0.82516 0.97374 0.88655 1.23187 1.04096 0.94706 0.96585 1.23258 0.94532 0.95343 0.95419 1.60611 1.39610 1.06780 1.11540 1.19179 0.93329 0.94873 0.91657 1.20932 1.02758 1.00923 0.93085 1.21027 0.96160 0.94380 0.99445 1.21086 0.98960 1.00707 0.96291 1.21018 0.99026 0.96936 0.94065 1.21035 0.98161 0.98168 1.01055 1.23097 1.02625 0.86234 0.96279 0.93083 0.96534 0.96544 0.93172 0.93176 0.91541 0.91557 0.87789 0.87787 0.89252 0.89018 0.91374 0.88728 0.85539 0.85851 0.86168 0.85947 0.85586 0.88027 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.11 -1.44 5.81 -27.89 -0.16 -1.60 16 13 C 0.46 6.34 7.96 36.01 0.29 6.62 16 14 O -0.50 -8.41 15.26 -18.75 -0.29 -8.70 16 15 O -0.35 -4.13 9.96 -39.25 -0.39 -4.52 16 16 C 0.07 0.70 3.23 -24.90 -0.08 0.62 16 17 H 0.10 1.08 7.29 -51.93 -0.38 0.70 16 18 C -0.15 -1.30 6.81 -24.59 -0.17 -1.46 16 19 C 0.04 0.30 5.47 -2.27 -0.01 0.29 16 20 N -0.47 -4.11 5.27 -167.88 -0.89 -4.99 16 21 C 0.11 0.95 5.78 -83.79 -0.48 0.47 16 22 C -0.16 -1.28 8.59 -39.38 -0.34 -1.62 16 23 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 24 C -0.15 -1.06 10.04 -39.55 -0.40 -1.46 16 25 C -0.09 -0.66 10.04 -39.61 -0.40 -1.05 16 26 C -0.16 -1.30 8.66 -39.38 -0.34 -1.64 16 27 C 0.04 0.37 5.96 -2.83 -0.02 0.36 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 1.17 8.14 -51.92 -0.42 0.74 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.49 6.51 -51.93 -0.34 0.15 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.13 0.90 6.78 -52.48 -0.36 0.54 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.83 6.42 -52.49 -0.34 0.49 16 46 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 47 H 0.08 0.65 5.95 -51.93 -0.31 0.34 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -32.79 382.92 -10.98 -43.77 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.59 Total: -2.42 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.32 Total: -19.12 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: -0.15 Total: -31.51 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.68 Total: -13.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.79 -10.98 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851188081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.252 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds