Wall clock time and date at job start Fri Apr 10 2020 23:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00263 * 2 1 4 4 H 1.48490 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47179 * 300.00534 * 3 2 1 6 6 H 1.48508 * 109.46725 * 59.99955 * 3 2 1 7 7 C 1.37877 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47028 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47252 * 180.02562 * 12 11 10 14 14 O 1.20829 * 119.99634 * 359.97438 * 13 12 11 15 15 O 1.34226 * 120.00125 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99955 * 179.97438 * 15 13 12 17 17 H 1.09006 * 110.63122 * 328.34697 * 16 15 13 18 18 C 1.55143 * 110.70909 * 91.45052 * 16 15 13 19 19 C 1.54907 * 101.68966 * 154.01697 * 18 16 15 20 20 N 1.47887 * 104.77499 * 322.98307 * 19 18 16 21 21 C 1.39674 * 111.01637 * 146.32837 * 20 19 18 22 22 C 1.38910 * 120.07707 * 202.66313 * 21 20 19 23 23 C 1.38108 * 119.92781 * 179.77253 * 22 21 20 24 24 C 1.38281 * 120.07201 * 0.50419 * 23 22 21 25 25 C 1.38288 * 120.15332 * 359.74892 * 24 23 22 26 26 C 1.38111 * 120.07106 * 359.97438 * 25 24 23 27 27 C 1.47445 * 108.58806 * 24.03753 * 20 19 18 28 28 H 0.96998 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47084 * 60.00809 * 9 7 2 30 30 H 1.08997 * 109.47510 * 300.00621 * 9 7 2 31 31 H 1.09000 * 109.46731 * 60.00243 * 10 9 7 32 32 H 1.08997 * 109.47113 * 300.00514 * 10 9 7 33 33 H 1.09001 * 109.46661 * 59.99845 * 11 10 9 34 34 H 1.08999 * 109.46996 * 300.00214 * 11 10 9 35 35 H 1.09001 * 109.47579 * 60.00342 * 12 11 10 36 36 H 1.09009 * 109.47211 * 300.00008 * 12 11 10 37 37 H 1.08994 * 110.98929 * 272.13134 * 18 16 15 38 38 H 1.09002 * 110.98654 * 35.91024 * 18 16 15 39 39 H 1.09002 * 110.37224 * 81.77893 * 19 18 16 40 40 H 1.09000 * 110.37430 * 204.12114 * 19 18 16 41 41 H 1.08008 * 120.03492 * 0.02562 * 22 21 20 42 42 H 1.07995 * 119.96470 * 180.25654 * 23 22 21 43 43 H 1.08000 * 119.92736 * 179.76768 * 24 23 22 44 44 H 1.07991 * 119.97029 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.03556 * 179.97438 * 26 25 24 46 46 H 1.08995 * 109.89098 * 239.63884 * 27 20 19 47 47 H 1.09002 * 109.88947 * 118.44953 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4744 -6.1500 -0.0005 13 6 1.7209 -7.4551 -0.0018 14 8 0.5127 -7.4551 -0.0026 15 8 2.3921 -8.6175 -0.0010 16 6 1.6013 -9.8353 -0.0017 17 1 0.6632 -9.6844 0.5326 18 6 1.3348 -10.3155 -1.4527 19 6 1.1326 -11.8376 -1.2474 20 7 2.0967 -12.2066 -0.1885 21 6 1.5890 -13.2284 0.6173 22 6 2.0771 -13.4067 1.9055 23 6 1.5696 -14.4150 2.7012 24 6 0.5839 -15.2531 2.2131 25 6 0.0994 -15.0818 0.9293 26 6 0.5986 -14.0718 0.1303 27 6 2.4002 -11.0051 0.6104 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8904 33 1 0.8539 -5.0445 -0.8914 34 1 0.8532 -5.0451 0.8886 35 1 3.1004 -6.0924 0.8899 36 1 3.1018 -6.0922 -0.8901 37 1 0.4348 -9.8532 -1.8579 38 1 2.1946 -10.1188 -2.0931 39 1 0.1134 -12.0443 -0.9210 40 1 1.3541 -12.3774 -2.1680 41 1 2.8498 -12.7549 2.2859 42 1 1.9457 -14.5515 3.7043 43 1 0.1914 -16.0432 2.8361 44 1 -0.6706 -15.7378 0.5512 45 1 0.2201 -13.9388 -0.8724 46 1 3.4675 -10.7892 0.5647 47 1 2.0952 -11.1611 1.6452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851188081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:34 Heat of formation + Delta-G solvation = -86.102679 kcal Electronic energy + Delta-G solvation = -25051.038727 eV Core-core repulsion = 21390.385314 eV Total energy + Delta-G solvation = -3660.653412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98260 -41.09731 -38.82292 -37.42091 -36.62132 -34.67162 -33.26025 -32.25418 -31.64169 -29.96774 -29.20043 -27.65404 -24.88807 -24.11140 -23.69983 -22.23847 -21.71304 -21.55977 -21.40217 -18.94594 -18.78625 -18.39891 -17.50749 -17.42696 -16.66732 -16.49927 -16.37693 -16.02096 -15.72587 -15.49016 -14.91853 -14.61432 -14.48604 -14.39953 -14.30032 -13.89507 -13.74627 -13.62106 -13.40563 -13.20785 -13.15462 -12.85641 -12.72132 -12.34717 -12.32707 -12.20698 -12.20016 -12.02939 -11.80703 -11.69165 -11.50080 -11.38219 -11.28955 -11.04510 -10.83126 -10.55281 -9.86229 -8.86066 -8.18908 -6.30540 0.42006 0.46617 1.13004 1.41164 1.41561 1.51492 1.55324 2.42125 2.57395 2.98276 3.14305 3.23375 3.37888 3.56725 3.79849 3.92067 3.95644 4.06754 4.08350 4.10915 4.15993 4.28564 4.36052 4.46824 4.54818 4.56357 4.62930 4.63634 4.70277 4.76011 4.77982 4.81555 4.85200 4.89318 5.04974 5.14058 5.19591 5.28288 5.32193 5.42800 5.49648 5.56961 5.65471 5.77802 5.77842 5.85242 5.88417 6.25606 6.26034 6.68496 6.88240 7.39198 8.93378 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.038192 B = 0.001671 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.954035 B =16756.250947 C =16849.393358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.100 4.100 12 C -0.102 4.102 13 C 0.466 3.534 14 O -0.540 6.540 15 O -0.342 6.342 16 C 0.062 3.938 17 H 0.080 0.920 18 C -0.144 4.144 19 C 0.044 3.956 20 N -0.476 5.476 21 C 0.089 3.911 22 C -0.170 4.170 23 C -0.100 4.100 24 C -0.157 4.157 25 C -0.099 4.099 26 C -0.174 4.174 27 C 0.050 3.950 28 H 0.262 0.738 29 H -0.013 1.013 30 H -0.013 1.013 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.105 0.895 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -33.223 1.392 33.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.139 4.139 13 C 0.310 3.690 14 O -0.430 6.430 15 O -0.258 6.258 16 C 0.006 3.994 17 H 0.099 0.901 18 C -0.182 4.182 19 C -0.081 4.081 20 N -0.191 5.191 21 C -0.009 4.009 22 C -0.190 4.190 23 C -0.118 4.118 24 C -0.176 4.176 25 C -0.118 4.118 26 C -0.195 4.195 27 C -0.075 4.075 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.154 0.846 46 H 0.124 0.876 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.466 -33.265 1.112 33.730 hybrid contribution -0.953 1.288 0.254 1.622 sum 4.512 -31.978 1.366 32.323 Atomic orbital electron populations 1.70130 1.07999 1.27648 1.51976 1.26065 0.95773 1.03657 0.94835 0.85350 0.79219 0.78534 0.77635 1.18142 1.20529 1.20552 1.21796 0.93800 0.92250 1.50079 0.91560 1.19068 0.94707 0.93663 0.94533 1.21443 0.97892 0.92369 1.01687 1.21351 0.97433 0.93236 1.01764 1.21512 0.98848 0.85447 1.08135 1.24376 0.87140 0.86686 0.70754 1.90667 1.17282 1.88178 1.46829 1.86560 1.41057 1.14495 1.83681 1.24027 0.94682 0.82242 0.98484 0.90144 1.23160 1.03921 0.95563 0.95575 1.23279 0.94596 0.94410 0.95820 1.60689 1.40052 1.06620 1.11702 1.19364 0.94116 0.95291 0.92149 1.21126 1.03164 1.01520 0.93216 1.21319 0.96172 0.94092 1.00231 1.21413 0.98663 1.00993 0.96553 1.21329 0.99333 0.96954 0.94168 1.21256 0.98128 0.98358 1.01755 1.23058 1.02463 0.85599 0.96427 0.92888 0.99464 0.99498 0.91819 0.91807 0.93109 0.93174 0.85177 0.85174 0.89831 0.88713 0.91140 0.87303 0.85033 0.84106 0.84258 0.84042 0.84644 0.87643 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.78 5.15 30.60 0.16 -3.62 16 11 C -0.10 -3.38 4.50 30.59 0.14 -3.24 16 12 C -0.10 -2.44 5.81 29.84 0.17 -2.27 16 13 C 0.47 12.44 7.96 71.24 0.57 13.01 16 14 O -0.54 -18.33 15.26 21.95 0.34 -17.99 16 15 O -0.34 -7.70 9.96 -51.38 -0.51 -8.21 16 16 C 0.06 1.24 3.23 31.78 0.10 1.34 16 17 H 0.08 1.87 7.29 -2.38 -0.02 1.85 16 18 C -0.14 -2.45 6.81 31.98 0.22 -2.23 16 19 C 0.04 0.63 5.47 86.76 0.47 1.10 16 20 N -0.48 -7.86 5.27 -685.05 -3.61 -11.47 16 21 C 0.09 1.50 5.78 38.21 0.22 1.72 16 22 C -0.17 -2.64 8.59 22.40 0.19 -2.45 16 23 C -0.10 -1.32 10.04 22.25 0.22 -1.10 16 24 C -0.16 -1.95 10.04 22.29 0.22 -1.73 16 25 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 26 C -0.17 -2.59 8.66 22.40 0.19 -2.40 16 27 C 0.05 0.83 5.96 86.65 0.52 1.35 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.05 1.83 8.10 -2.39 -0.02 1.82 16 35 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.13 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 0.97 6.51 -2.39 -0.02 0.95 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.13 1.78 6.78 -2.91 -0.02 1.76 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 43 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 44 H 0.14 1.17 8.06 -2.92 -0.02 1.14 16 45 H 0.14 1.62 6.42 -2.91 -0.02 1.61 16 46 H 0.11 1.65 8.06 -2.39 -0.02 1.63 16 47 H 0.09 1.32 5.95 -2.39 -0.01 1.31 16 Total: -1.00 -71.86 382.92 3.93 -67.93 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.94 Total: 12.39 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.47 Total: -31.11 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -3.33 Total: -69.50 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.18 Total: -26.21 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.86 3.93 -67.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851188081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.169 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds