Wall clock time and date at job start Fri Apr 10 2020 23:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 110.01489 * 2 1 4 4 C 1.53872 * 110.03181 * 121.39076 * 2 1 3 5 5 C 1.54276 * 106.59817 * 119.28652 * 4 2 1 6 6 C 1.54890 * 104.19232 * 23.60735 * 5 4 2 7 7 H 1.09005 * 110.75656 * 80.37671 * 6 5 4 8 8 C 1.50702 * 110.75618 * 203.55958 * 6 5 4 9 9 O 1.21277 * 119.99862 * 118.54823 * 8 6 5 10 10 N 1.34783 * 119.99488 * 298.54959 * 8 6 5 11 11 C 1.46499 * 119.99258 * 179.97438 * 10 8 6 12 12 C 1.50705 * 109.46726 * 179.97438 * 11 10 8 13 13 C 1.38301 * 119.93400 * 269.72676 * 12 11 10 14 14 C 1.38091 * 120.07023 * 179.72350 * 13 12 11 15 15 C 1.38881 * 119.93321 * 0.52968 * 14 13 12 16 16 O 1.35746 * 120.07415 * 179.72481 * 15 14 13 17 17 C 1.34830 * 117.00291 * 174.48975 * 16 15 14 18 18 H 1.08005 * 120.00103 * 5.05351 * 17 16 15 19 19 C 1.38651 * 120.00240 * 185.05576 * 17 16 15 20 20 N 1.31557 * 120.00119 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99967 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47087 * 60.00558 * 21 19 17 23 23 H 1.48508 * 109.47094 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47257 * 299.99651 * 21 19 17 25 25 C 1.38885 * 119.85930 * 359.74896 * 15 14 13 26 26 C 1.38102 * 119.93010 * 359.97438 * 25 15 14 27 27 C 1.54269 * 110.02948 * 238.60968 * 2 1 3 28 28 H 1.08996 * 109.46912 * 60.70137 * 1 2 3 29 29 H 1.08999 * 109.47235 * 300.69657 * 1 2 3 30 30 H 1.09001 * 109.46816 * 180.69764 * 1 2 3 31 31 H 1.08997 * 109.47159 * 59.29984 * 3 2 1 32 32 H 1.08992 * 109.47107 * 179.29945 * 3 2 1 33 33 H 1.09000 * 109.47006 * 299.30445 * 3 2 1 34 34 H 1.08998 * 110.03572 * 238.56992 * 4 2 1 35 35 H 1.09003 * 110.03223 * 359.95686 * 4 2 1 36 36 H 1.08993 * 110.48437 * 142.28488 * 5 4 2 37 37 H 1.09004 * 110.48319 * 264.93525 * 5 4 2 38 38 H 0.96990 * 120.00539 * 0.02562 * 10 8 6 39 39 H 1.08999 * 109.47942 * 300.00144 * 11 10 8 40 40 H 1.09004 * 109.47531 * 60.00497 * 11 10 8 41 41 H 1.08004 * 119.96177 * 359.97438 * 13 12 11 42 42 H 1.08007 * 120.03642 * 180.27284 * 14 13 12 43 43 H 0.96995 * 120.00701 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.03617 * 179.97438 * 25 15 14 45 45 H 1.07997 * 119.96665 * 180.02562 * 26 25 15 46 46 H 1.08994 * 110.48976 * 335.78287 * 27 2 1 47 47 H 1.09001 * 110.48138 * 98.43117 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0572 -0.7530 1.2340 5 6 2.8876 -1.9404 0.7043 6 6 3.3137 -1.5010 -0.7185 7 1 4.1711 -0.8293 -0.6748 8 6 3.6206 -2.7001 -1.5782 9 8 2.9723 -2.9086 -2.5817 10 7 4.6157 -3.5406 -1.2318 11 6 4.9136 -4.7065 -2.0673 12 6 6.0606 -5.4763 -1.4647 13 6 7.3603 -5.1775 -1.8310 14 6 8.4137 -5.8773 -1.2763 15 6 8.1664 -6.8894 -0.3581 16 8 9.1994 -7.5828 0.1848 17 6 8.8984 -8.4723 1.1523 18 1 7.8665 -8.6663 1.4055 19 6 9.9135 -9.1378 1.8224 20 7 11.1704 -8.9019 1.5139 21 14 9.4964 -10.3696 3.1634 22 1 8.6677 -11.4614 2.5922 23 1 10.7500 -10.9386 3.7203 24 1 8.7402 -9.6876 4.2442 25 6 6.8597 -7.1910 0.0033 26 6 5.8109 -6.4837 -0.5506 27 6 2.0585 -0.7549 -1.2373 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 -1.0276 0.0125 31 1 1.6851 1.9586 0.8836 32 1 3.1435 1.4273 0.0126 33 1 1.7055 1.9511 -0.8962 34 1 2.6867 -0.0946 1.8325 35 1 1.2229 -1.1178 1.8333 36 1 3.7638 -2.1031 1.3318 37 1 2.2772 -2.8423 0.6583 38 1 5.1340 -3.3740 -0.4291 39 1 4.0343 -5.3482 -2.1228 40 1 5.1856 -4.3754 -3.0696 41 1 7.5518 -4.3933 -2.5485 42 1 9.4288 -5.6405 -1.5594 43 1 11.8806 -9.3671 1.9828 44 1 6.6641 -7.9778 0.7168 45 1 4.7946 -6.7175 -0.2697 46 1 1.3143 -1.4653 -1.5973 47 1 2.3297 -0.0526 -2.0255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781684847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:46 Heat of formation + Delta-G solvation = -70.049985 kcal Electronic energy + Delta-G solvation = -25588.545969 eV Core-core repulsion = 21928.588654 eV Total energy + Delta-G solvation = -3659.957315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32482 -39.19102 -38.32091 -36.83741 -34.40966 -32.72983 -32.33273 -30.30723 -29.92449 -29.11610 -27.59847 -26.19205 -25.28048 -24.18911 -22.11244 -22.04390 -20.64586 -19.88052 -18.97657 -18.09556 -17.41981 -16.92512 -16.08169 -15.69816 -15.07402 -14.84208 -14.60411 -14.47569 -14.11180 -13.97893 -13.75423 -13.69322 -13.55542 -13.42877 -13.28738 -12.80429 -12.71871 -12.36553 -12.16165 -11.87690 -11.77992 -11.67849 -11.44024 -11.30498 -10.99336 -10.93632 -10.83273 -10.81463 -10.79541 -10.72934 -10.67677 -10.51697 -9.73738 -9.44759 -8.94573 -8.91849 -8.30461 -7.34124 -6.54234 -4.13342 2.05859 2.11193 2.68515 3.07723 3.08053 3.11750 3.40751 3.89174 4.19743 4.25030 4.42890 4.51775 4.84120 4.95552 4.98365 5.00313 5.07155 5.15672 5.18855 5.23087 5.29459 5.34958 5.37556 5.41309 5.50216 5.56549 5.64682 5.67474 5.71954 5.77946 5.79138 5.80387 5.92839 5.96907 6.04162 6.09952 6.10554 6.18867 6.33116 6.53382 6.58783 6.78692 6.93862 7.12329 7.25633 7.33391 7.62225 7.70446 7.90208 8.29154 8.90878 9.58936 10.63158 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002230 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.556543 B =12554.524345 C =13220.530831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.116 4.116 7 H 0.100 0.900 8 C 0.516 3.484 9 O -0.549 6.549 10 N -0.721 5.721 11 C 0.178 3.822 12 C -0.214 4.214 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.051 4.051 27 C -0.092 4.092 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.128 0.872 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.361 15.999 -0.525 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.137 4.137 7 H 0.118 0.882 8 C 0.302 3.698 9 O -0.427 6.427 10 N -0.372 5.372 11 C 0.056 3.944 12 C -0.216 4.216 13 C -0.074 4.074 14 C -0.215 4.215 15 C 0.105 3.895 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.070 4.070 27 C -0.130 4.130 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.146 0.854 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.325 15.739 -1.218 22.709 hybrid contribution 0.158 -0.650 1.093 1.282 sum -16.167 15.089 -0.125 22.114 Atomic orbital electron populations 1.21906 0.94326 1.01815 1.01543 1.21216 0.95605 0.95423 0.95071 1.21921 1.00971 0.95115 1.01581 1.22279 0.99440 0.96545 0.96950 1.22342 1.00208 0.98704 0.93930 1.22322 1.00352 0.95448 0.95579 0.88163 1.20552 0.79648 0.83871 0.85679 1.90675 1.50224 1.74732 1.27033 1.46371 1.35312 1.26683 1.28849 1.19974 0.95740 0.85505 0.93190 1.19216 0.93545 1.02970 1.05835 1.20527 0.91514 0.97679 0.97630 1.20215 0.99190 0.99315 1.02732 1.19439 0.87915 0.90192 0.91923 1.83977 1.29797 1.46710 1.47062 1.21305 0.94449 1.18152 1.13095 0.88983 1.25317 0.94488 0.98310 0.98339 1.70022 0.98875 1.40407 1.40047 0.85765 0.78174 0.79650 0.79774 1.19418 1.20201 1.19433 1.21157 0.92256 1.05287 1.06908 1.20637 0.97752 0.94070 0.94511 1.22335 0.95840 0.98471 0.96388 0.92679 0.92771 0.92516 0.92750 0.92525 0.92692 0.91402 0.91438 0.90818 0.91093 0.76408 0.91695 0.91647 0.86992 0.86380 0.91812 0.85430 0.87438 0.90251 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.15 37.16 0.30 -0.67 16 2 C -0.07 -0.54 0.94 -153.39 -0.14 -0.69 16 3 C -0.14 -0.91 8.14 37.16 0.30 -0.61 16 4 C -0.11 -0.83 6.11 -25.61 -0.16 -0.99 16 5 C -0.11 -0.94 6.22 -25.07 -0.16 -1.10 16 6 C -0.12 -1.09 3.28 -89.74 -0.29 -1.39 16 7 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 8 C 0.52 6.60 7.16 -10.98 -0.08 6.52 16 9 O -0.55 -9.03 15.81 5.56 0.09 -8.94 16 10 N -0.72 -8.87 5.49 -61.47 -0.34 -9.21 16 11 C 0.18 2.49 5.80 -5.19 -0.03 2.46 16 12 C -0.21 -3.40 5.25 -104.57 -0.55 -3.95 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 14 C -0.20 -3.91 9.99 -39.40 -0.39 -4.30 16 15 C 0.16 3.69 6.65 -39.10 -0.26 3.43 16 16 O -0.17 -4.77 9.76 0.06 0.00 -4.77 16 17 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 18 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.56 13.67 55.48 0.76 -23.80 16 21 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 C -0.09 -0.86 4.95 -25.03 -0.12 -0.99 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 35 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 38 H 0.40 4.40 8.46 -40.82 -0.35 4.05 16 39 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.08 0.88 7.25 -51.93 -0.38 0.50 16 47 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -30.53 383.33 -8.79 -39.32 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.54 Total: 6.15 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.51 Total: -19.41 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.42 Total: -33.00 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.53 -8.79 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781684847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.731 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds