Wall clock time and date at job start Fri Apr 10 2020 23:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21251 * 119.99527 * 2 1 4 4 C 1.47186 * 120.00306 * 179.97438 * 2 1 3 5 5 C 1.39617 * 120.10037 * 359.20197 * 4 2 1 6 6 C 1.39227 * 119.67998 * 180.02562 * 5 4 2 7 7 C 1.47864 * 120.06253 * 180.02562 * 6 5 4 8 8 O 1.21555 * 119.99569 * 336.28359 * 7 6 5 9 9 N 1.34771 * 120.00007 * 156.28341 * 7 6 5 10 10 C 1.46502 * 120.00390 * 356.69312 * 9 7 6 11 11 C 1.50696 * 109.46909 * 104.75855 * 10 9 7 12 12 H 1.07998 * 120.00432 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99928 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99852 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99571 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47111 * 89.99940 * 15 13 11 17 17 H 1.48507 * 109.46587 * 209.99573 * 15 13 11 18 18 H 1.48490 * 109.47280 * 329.99504 * 15 13 11 19 19 C 1.46503 * 119.99963 * 176.69450 * 9 7 6 20 20 C 1.52995 * 109.47405 * 94.77282 * 19 9 7 21 21 C 1.53000 * 109.47309 * 173.75772 * 20 19 9 22 22 C 1.53003 * 109.47018 * 293.75997 * 20 19 9 23 23 C 1.39745 * 119.87695 * 359.97438 * 6 5 4 24 24 C 1.38102 * 120.20261 * 0.25510 * 23 6 5 25 25 C 1.38026 * 120.32493 * 359.48790 * 24 23 6 26 26 C 1.50699 * 119.93923 * 180.23259 * 25 24 23 27 27 H 1.09003 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47265 * 299.99625 * 1 2 3 29 29 H 1.08993 * 109.46938 * 60.00360 * 1 2 3 30 30 H 1.08006 * 120.15738 * 0.04481 * 5 4 2 31 31 H 1.08997 * 109.47108 * 224.75955 * 10 9 7 32 32 H 1.08997 * 109.46919 * 344.76535 * 10 9 7 33 33 H 0.97003 * 119.99623 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47135 * 214.77369 * 19 9 7 35 35 H 1.09003 * 109.46971 * 334.76967 * 19 9 7 36 36 H 1.08999 * 109.46975 * 53.75072 * 20 19 9 37 37 H 1.08997 * 109.47154 * 60.00284 * 21 20 19 38 38 H 1.09002 * 109.46964 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47192 * 299.99821 * 21 20 19 40 40 H 1.08999 * 109.47538 * 185.58134 * 22 20 19 41 41 H 1.09004 * 109.46845 * 305.58260 * 22 20 19 42 42 H 1.09002 * 109.47341 * 65.58114 * 22 20 19 43 43 H 1.08007 * 119.89815 * 179.97438 * 23 6 5 44 44 H 1.07999 * 119.83387 * 179.74784 * 24 23 6 45 45 H 1.09004 * 109.47290 * 263.50238 * 26 25 24 46 46 H 1.08996 * 109.47555 * 23.50700 * 26 25 24 47 47 H 1.09009 * 109.46986 * 143.50679 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5472 -2.4849 0.0179 6 6 2.2523 -3.6855 0.0189 7 6 1.5239 -4.9722 0.0366 8 8 0.3907 -5.0230 0.4733 9 7 2.1166 -6.0885 -0.4313 10 6 3.4544 -6.0143 -1.0239 11 6 4.4654 -6.5664 -0.0523 12 1 4.1437 -6.9360 0.9101 13 6 5.8012 -6.6007 -0.3926 14 7 6.6834 -7.0830 0.4551 15 14 6.3575 -5.9621 -2.0575 16 1 6.6771 -4.5158 -1.9514 17 1 7.5668 -6.7056 -2.4939 18 1 5.2711 -6.1574 -3.0508 19 6 1.4231 -7.3762 -0.3473 20 6 0.6901 -7.6475 -1.6626 21 6 0.0960 -9.0572 -1.6341 22 6 -0.4333 -6.6241 -1.8408 23 6 3.6496 -3.6722 0.0019 24 6 4.3328 -2.4722 -0.0104 25 6 3.6423 -1.2771 -0.0168 26 6 4.3966 0.0274 -0.0356 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 0.4673 -2.4898 0.0303 31 1 3.4773 -6.5989 -1.9435 32 1 3.6954 -4.9752 -1.2477 33 1 7.6232 -7.1068 0.2159 34 1 2.1491 -8.1688 -0.1659 35 1 0.7033 -7.3486 0.4708 36 1 1.3913 -7.5653 -2.4930 37 1 -0.6053 -9.1392 -0.8038 38 1 -0.4266 -9.2502 -2.5710 39 1 0.8963 -9.7862 -1.5072 40 1 -1.0175 -6.8762 -2.7258 41 1 -1.0794 -6.6374 -0.9630 42 1 -0.0033 -5.6297 -1.9605 43 1 4.1968 -4.6034 0.0031 44 1 5.4128 -2.4688 -0.0194 45 1 4.4859 0.4102 0.9811 46 1 5.3911 -0.1339 -0.4517 47 1 3.8585 0.7495 -0.6498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789911485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:53 Heat of formation + Delta-G solvation = -31.341596 kcal Electronic energy + Delta-G solvation = -27542.634109 eV Core-core repulsion = 23884.355316 eV Total energy + Delta-G solvation = -3658.278794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44199 -39.43150 -37.63438 -36.07575 -34.65165 -32.64667 -32.50080 -31.75771 -29.35143 -28.35073 -27.47987 -26.85433 -25.58158 -23.44010 -22.85855 -21.63885 -20.43489 -19.71753 -18.69216 -17.22288 -16.90553 -16.21182 -15.64272 -15.29855 -15.07477 -15.06812 -14.81543 -14.29241 -14.23149 -13.95255 -13.77088 -13.40762 -13.25963 -13.01589 -12.75804 -12.58356 -12.27961 -12.20383 -12.13670 -11.97759 -11.86130 -11.67274 -11.47157 -11.34997 -11.06761 -11.03000 -10.95432 -10.61494 -10.35365 -10.25583 -10.22420 -9.79403 -9.45769 -9.16068 -8.98566 -8.64005 -8.41442 -7.82627 -6.43846 -4.47662 0.83747 1.29700 2.48385 3.04026 3.13747 3.16104 3.33971 3.68262 4.07815 4.13425 4.13930 4.83685 4.90316 4.92590 5.00269 5.16899 5.23184 5.26182 5.34490 5.40052 5.46248 5.52376 5.55670 5.79296 5.84133 5.88445 5.91775 5.92146 5.95945 6.02607 6.11673 6.17517 6.22192 6.25048 6.27431 6.31684 6.39601 6.55045 6.58929 6.61157 6.70717 6.71839 6.81302 7.11337 7.15049 7.31333 7.58979 7.93591 8.25741 8.63869 8.78054 9.13073 10.67022 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009987 B = 0.005687 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.861506 B = 4922.261733 C = 7160.642024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.401 3.599 3 O -0.465 6.465 4 C -0.207 4.207 5 C -0.016 4.016 6 C -0.155 4.155 7 C 0.559 3.441 8 O -0.561 6.561 9 N -0.579 5.579 10 C 0.179 3.821 11 C -0.548 4.548 12 H 0.085 0.915 13 C 0.083 3.917 14 N -0.875 5.875 15 Si 0.859 3.141 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.260 1.260 19 C 0.125 3.875 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.154 4.154 25 C -0.005 4.005 26 C -0.127 4.127 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.271 0.729 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.204 0.796 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 6.499 -4.257 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.282 3.718 3 O -0.343 6.343 4 C -0.208 4.208 5 C -0.035 4.035 6 C -0.158 4.158 7 C 0.348 3.652 8 O -0.443 6.443 9 N -0.307 5.307 10 C 0.058 3.942 11 C -0.586 4.586 12 H 0.103 0.897 13 C -0.123 4.123 14 N -0.510 5.510 15 Si 0.684 3.316 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.184 1.184 19 C 0.002 3.998 20 C -0.133 4.133 21 C -0.199 4.199 22 C -0.192 4.192 23 C -0.083 4.083 24 C -0.172 4.172 25 C -0.006 4.006 26 C -0.183 4.183 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.156 0.844 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.220 0.780 44 H 0.149 0.851 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.863 6.933 -4.004 11.944 hybrid contribution 0.626 0.035 -0.827 1.038 sum -8.237 6.968 -4.831 11.821 Atomic orbital electron populations 1.22258 0.94150 1.05073 1.04580 1.22378 0.91419 0.87562 0.70491 1.90443 1.71381 1.34659 1.37850 1.20100 0.93854 0.94408 1.12404 1.21509 1.00072 0.90208 0.91756 1.19946 0.94247 0.93551 1.08063 1.18143 0.85389 0.83810 0.77845 1.90676 1.18442 1.86278 1.48868 1.47707 1.18150 1.06553 1.58312 1.20677 0.79798 0.98870 0.94821 1.21307 0.90767 1.42853 1.03649 0.89714 1.24921 0.96484 0.94209 0.96698 1.69878 1.02598 1.43202 1.35338 0.87096 0.79543 0.80127 0.84850 1.19096 1.20381 1.18416 1.21452 0.96161 0.85396 0.96793 1.21504 0.97562 0.95202 0.98988 1.21747 1.00713 0.96108 1.01379 1.21754 0.97908 0.98745 1.00816 1.23894 0.94338 1.02791 0.87273 1.21180 1.00559 0.91415 1.04086 1.20416 0.92495 0.96100 0.91574 1.21185 0.99250 0.94531 1.03332 0.89587 0.88916 0.88998 0.84366 0.95075 0.92783 0.91889 0.89830 0.90497 0.91236 0.92737 0.92969 0.92501 0.93933 0.92251 0.93147 0.78010 0.85144 0.90729 0.92136 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 10.19 36.01 0.37 -1.65 16 2 C 0.40 5.44 7.20 -30.67 -0.22 5.22 16 3 O -0.47 -7.16 13.98 5.58 0.08 -7.08 16 4 C -0.21 -3.16 5.86 -105.11 -0.62 -3.78 16 5 C -0.02 -0.26 8.98 -38.70 -0.35 -0.61 16 6 C -0.16 -2.88 5.59 -105.03 -0.59 -3.46 16 7 C 0.56 11.07 6.38 -12.32 -0.08 10.99 16 8 O -0.56 -11.61 14.68 5.32 0.08 -11.53 16 9 N -0.58 -11.35 2.34 -176.17 -0.41 -11.76 16 10 C 0.18 3.74 3.74 -5.19 -0.02 3.72 16 11 C -0.55 -13.28 7.72 -34.44 -0.27 -13.54 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.08 2.07 5.38 -17.82 -0.10 1.98 16 14 N -0.87 -23.60 13.96 55.43 0.77 -22.83 16 15 Si 0.86 18.36 27.42 -169.99 -4.66 13.69 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 19 C 0.12 2.19 4.89 -4.04 -0.02 2.17 16 20 C -0.11 -1.70 3.12 -90.62 -0.28 -1.98 16 21 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 22 C -0.13 -2.01 7.94 37.16 0.30 -1.71 16 23 C -0.07 -1.26 7.49 -39.07 -0.29 -1.55 16 24 C -0.15 -2.64 9.64 -39.71 -0.38 -3.03 16 25 C -0.01 -0.08 5.93 -104.06 -0.62 -0.70 16 26 C -0.13 -1.75 8.80 36.01 0.32 -1.43 16 27 H 0.09 0.80 5.60 -51.93 -0.29 0.51 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.14 1.96 5.69 -52.48 -0.30 1.66 16 31 H 0.03 0.65 7.06 -51.93 -0.37 0.29 16 32 H 0.06 1.12 3.50 -52.11 -0.18 0.94 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.08 1.51 7.91 -51.93 -0.41 1.10 16 35 H 0.08 1.37 7.33 -51.93 -0.38 0.99 16 36 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.05 0.83 6.85 -51.93 -0.36 0.47 16 43 H 0.20 4.30 2.85 -52.48 -0.15 4.15 16 44 H 0.13 2.08 8.05 -52.49 -0.42 1.66 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.74 8.04 -51.93 -0.42 0.33 16 47 H 0.09 1.34 5.69 -51.92 -0.30 1.04 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -27.58 369.02 -8.03 -35.61 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.95 Total: 9.11 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.51 Total: -10.78 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.36 Total: -34.59 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.16 Total: -18.61 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -4.66 Total: 13.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.58 -8.03 -35.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789911485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.273 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds