Wall clock time and date at job start Fri Apr 10 2020 23:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47402 * 239.99781 * 2 1 3 5 5 C 1.50706 * 109.47217 * 119.99479 * 2 1 3 6 6 C 1.37979 * 120.07321 * 8.24632 * 5 2 1 7 7 C 1.38338 * 120.14396 * 180.27331 * 6 5 2 8 8 C 1.38383 * 120.29326 * 359.69665 * 7 6 5 9 9 C 1.37938 * 120.14456 * 0.04631 * 8 7 6 10 10 C 1.39555 * 120.07528 * 187.98276 * 5 2 1 11 11 C 1.47846 * 120.14296 * 0.02932 * 10 5 2 12 12 O 1.21555 * 120.00379 * 284.89421 * 11 10 5 13 13 N 1.34784 * 119.99885 * 104.89510 * 11 10 5 14 14 C 1.47423 * 125.64775 * 355.67785 * 13 11 10 15 15 C 1.55386 * 104.87136 * 204.16847 * 14 13 11 16 16 C 1.55148 * 101.36839 * 323.01620 * 15 14 13 17 17 O 1.42902 * 110.72437 * 277.04533 * 16 15 14 18 18 C 1.50699 * 110.72263 * 153.94554 * 16 15 14 19 19 H 1.08002 * 120.00169 * 238.73098 * 18 16 15 20 20 C 1.37883 * 119.99809 * 58.73599 * 18 16 15 21 21 N 1.31513 * 119.99731 * 5.14056 * 20 18 16 22 22 Si 1.86800 * 119.99955 * 185.14877 * 20 18 16 23 23 H 1.48494 * 109.47461 * 94.98821 * 22 20 18 24 24 H 1.48503 * 109.47037 * 214.99062 * 22 20 18 25 25 H 1.48500 * 109.47173 * 334.98615 * 22 20 18 26 26 C 1.47025 * 125.64739 * 175.71948 * 13 11 10 27 27 H 1.09002 * 109.47034 * 300.00437 * 1 2 3 28 28 H 1.09000 * 109.47262 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47117 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47402 * 198.05873 * 3 2 1 31 31 H 1.09000 * 109.46967 * 318.05698 * 3 2 1 32 32 H 1.08996 * 109.47310 * 78.05680 * 3 2 1 33 33 H 1.08995 * 109.46627 * 316.84985 * 4 2 1 34 34 H 1.09003 * 109.46840 * 76.84750 * 4 2 1 35 35 H 1.09000 * 109.47389 * 196.84812 * 4 2 1 36 36 H 1.08002 * 119.92340 * 359.97438 * 6 5 2 37 37 H 1.07998 * 119.85504 * 179.71980 * 7 6 5 38 38 H 1.07997 * 119.92538 * 180.02562 * 8 7 6 39 39 H 1.07995 * 120.07305 * 179.97438 * 9 8 7 40 40 H 1.09003 * 110.36598 * 323.00082 * 14 13 11 41 41 H 1.08999 * 110.36904 * 85.21521 * 14 13 11 42 42 H 1.09005 * 111.18698 * 204.97959 * 15 14 13 43 43 H 1.08998 * 111.02402 * 80.98658 * 15 14 13 44 44 H 0.96705 * 113.99972 * 296.15880 * 17 16 15 45 45 H 0.97003 * 119.99709 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.88120 * 59.49095 * 26 13 11 47 47 H 1.09000 * 110.00840 * 298.39726 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.1487 -1.3815 2.0507 7 6 1.6075 -2.0292 3.1837 8 6 2.9548 -2.0142 3.4990 9 6 3.8495 -1.3514 2.6847 10 6 3.3930 -0.6954 1.5402 11 6 4.3462 0.0174 0.6631 12 8 4.6677 -0.4659 -0.4049 13 7 4.8589 1.2031 1.0479 14 6 4.4899 1.9433 2.2682 15 6 4.8348 3.4257 1.9551 16 6 6.1324 3.2678 1.1194 17 8 7.2688 3.1198 1.9730 18 6 6.3146 4.4408 0.1909 19 1 6.3799 4.2806 -0.8752 20 6 6.3981 5.7184 0.7025 21 7 6.4205 5.9054 2.0040 22 14 6.4793 7.1838 -0.4532 23 1 5.1143 7.7335 -0.6522 24 1 7.3535 8.2302 0.1349 25 1 7.0347 6.7525 -1.7612 26 6 5.8780 1.9728 0.3195 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.0823 1.4594 -0.3186 31 1 1.4404 2.0398 -0.6869 32 1 1.9606 1.8559 1.0054 33 1 1.4543 -1.6262 -1.4108 34 1 1.9407 -0.0649 -2.1137 35 1 3.0885 -0.9866 -1.1130 36 1 0.0960 -1.3970 1.8101 37 1 0.9111 -2.5493 3.8247 38 1 3.3066 -2.5222 4.3848 39 1 4.9006 -1.3400 2.9322 40 1 3.4239 1.8365 2.4690 41 1 5.0727 1.5881 3.1181 42 1 5.0250 3.9875 2.8696 43 1 4.0460 3.8949 1.3672 44 1 7.4494 3.8929 2.5252 45 1 6.4789 6.8043 2.3639 46 1 5.5141 2.2187 -0.6781 47 1 6.7996 1.3954 0.2459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:44 Heat of formation + Delta-G solvation = -71.999282 kcal Electronic energy + Delta-G solvation = -28393.549186 eV Core-core repulsion = 24733.507343 eV Total energy + Delta-G solvation = -3660.041843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96554 -40.05578 -38.74924 -37.23817 -36.12260 -34.22852 -32.61691 -31.24623 -30.89913 -30.03415 -28.32311 -28.14111 -27.14504 -24.90119 -23.80808 -23.34114 -21.64156 -20.71502 -20.08709 -19.15194 -18.53790 -17.43879 -17.01209 -16.91330 -16.60302 -16.15758 -15.95018 -15.34217 -15.26608 -15.03541 -14.93935 -14.81667 -14.44013 -13.91613 -13.86891 -13.69063 -13.48250 -13.26426 -13.21024 -13.11696 -12.94506 -12.83717 -12.67153 -12.53746 -12.49336 -12.34577 -12.28484 -12.02480 -11.86332 -11.64438 -11.37014 -11.27122 -10.80234 -10.60611 -10.17224 -9.86154 -9.65548 -9.61820 -8.26287 -6.40198 0.16986 0.43199 1.39891 1.43646 1.51886 1.52444 2.00240 2.38873 2.77480 2.99518 3.43133 3.61051 3.78086 3.85423 3.94536 4.05224 4.08367 4.21478 4.24807 4.31103 4.36782 4.50843 4.52052 4.57715 4.59838 4.69784 4.76445 4.80592 4.85477 4.91393 4.95410 5.01916 5.05499 5.12785 5.17049 5.21556 5.27019 5.30588 5.44523 5.47604 5.48924 5.52236 5.56984 5.68149 5.74585 6.01350 6.06456 6.52435 6.63833 7.06304 7.29302 7.40594 8.79946 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.004233 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.078595 B = 6613.198039 C = 7179.695806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 C -0.149 4.149 4 C -0.166 4.166 5 C -0.045 4.045 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.122 4.122 9 C -0.101 4.101 10 C -0.134 4.134 11 C 0.577 3.423 12 O -0.572 6.572 13 N -0.600 5.600 14 C 0.112 3.888 15 C -0.120 4.120 16 C 0.239 3.761 17 O -0.594 6.594 18 C -0.564 4.564 19 H 0.050 0.950 20 C 0.042 3.958 21 N -0.903 5.903 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.278 1.278 26 C 0.131 3.869 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.381 0.619 45 H 0.272 0.728 46 H 0.059 0.941 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 -11.950 5.042 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.033 4.033 3 C -0.206 4.206 4 C -0.223 4.223 5 C -0.046 4.046 6 C -0.141 4.141 7 C -0.113 4.113 8 C -0.140 4.140 9 C -0.119 4.119 10 C -0.137 4.137 11 C 0.368 3.632 12 O -0.454 6.454 13 N -0.331 5.331 14 C -0.010 4.010 15 C -0.158 4.158 16 C 0.199 3.801 17 O -0.402 6.402 18 C -0.602 4.602 19 H 0.068 0.932 20 C -0.160 4.160 21 N -0.542 5.542 22 Si 0.781 3.219 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.203 1.203 26 C 0.008 3.992 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.230 0.770 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.866 -12.706 4.320 19.297 hybrid contribution 0.807 1.720 -0.623 2.000 sum -13.060 -10.986 3.697 17.462 Atomic orbital electron populations 1.21949 0.91509 1.02968 1.02744 1.19579 0.97574 0.93885 0.92248 1.22138 1.00850 0.95682 1.01957 1.22390 1.03750 1.00026 0.96124 1.19997 0.91032 0.97177 0.96369 1.21435 1.00684 0.97305 0.94649 1.21709 0.95863 0.97324 0.96424 1.21379 0.93450 0.99165 1.00002 1.21250 1.00568 0.97242 0.92867 1.19633 0.93798 1.02969 0.97334 1.18373 0.80234 0.79212 0.85371 1.90602 1.62376 1.67780 1.24653 1.48600 1.40180 1.19448 1.24903 1.22474 1.00181 0.92037 0.86322 1.23107 0.98588 0.93082 1.01064 1.19553 0.83592 0.89605 0.87334 1.86111 1.50535 1.44948 1.58654 1.21702 1.52669 0.92287 0.93561 0.93205 1.25537 0.92970 1.00825 0.96693 1.69745 1.49361 1.23456 1.11637 0.85582 0.78217 0.79003 0.79049 1.19869 1.20339 1.20260 1.21788 0.89853 0.92214 0.95348 0.91299 0.91917 0.90641 0.94176 0.91546 0.92559 0.91764 0.93329 0.90970 0.82557 0.82106 0.82829 0.86303 0.89930 0.91424 0.90220 0.92488 0.76953 0.91825 0.92288 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 7.02 71.98 0.51 -1.98 16 2 C -0.03 -0.86 0.75 -52.93 -0.04 -0.90 16 3 C -0.15 -4.58 7.49 71.98 0.54 -4.04 16 4 C -0.17 -4.90 8.39 71.98 0.60 -4.29 16 5 C -0.05 -1.18 4.68 -19.61 -0.09 -1.28 16 6 C -0.12 -2.35 9.01 22.23 0.20 -2.15 16 7 C -0.10 -1.54 10.04 22.33 0.22 -1.31 16 8 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 9 C -0.10 -2.65 9.79 22.53 0.22 -2.43 16 10 C -0.13 -4.19 4.31 -20.09 -0.09 -4.27 16 11 C 0.58 22.41 3.93 86.79 0.34 22.75 16 12 O -0.57 -25.66 14.17 -3.89 -0.06 -25.71 16 13 N -0.60 -24.09 2.30 -814.21 -1.87 -25.96 16 14 C 0.11 4.09 6.49 87.02 0.57 4.66 16 15 C -0.12 -5.16 5.48 32.15 0.18 -4.98 16 16 C 0.24 11.65 0.85 -10.36 -0.01 11.64 16 17 O -0.59 -30.04 13.08 -148.98 -1.95 -31.99 16 18 C -0.56 -29.91 8.21 25.60 0.21 -29.70 16 19 H 0.05 2.71 7.61 -2.91 -0.02 2.69 16 20 C 0.04 2.12 5.24 84.66 0.44 2.56 16 21 N -0.90 -45.64 10.68 21.45 0.23 -45.41 16 22 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.13 6.10 6.22 86.73 0.54 6.63 16 27 H 0.07 1.13 7.89 -2.39 -0.02 1.11 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 7.13 -2.39 -0.02 1.10 16 30 H 0.04 1.50 4.92 -2.38 -0.01 1.49 16 31 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 32 H 0.06 1.69 6.73 -2.39 -0.02 1.67 16 33 H 0.06 1.61 8.03 -2.39 -0.02 1.59 16 34 H 0.05 1.42 8.03 -2.39 -0.02 1.40 16 35 H 0.07 2.66 4.01 -2.60 -0.01 2.65 16 36 H 0.16 2.12 5.92 -2.91 -0.02 2.10 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.08 2.66 6.54 -2.39 -0.02 2.65 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 3.56 7.53 -2.38 -0.02 3.54 16 43 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 44 H 0.38 19.24 7.46 -74.05 -0.55 18.68 16 45 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 46 H 0.06 2.86 7.68 -2.39 -0.02 2.84 16 47 H 0.04 2.15 8.07 -2.39 -0.02 2.13 16 Total: -1.00 -61.31 361.37 3.37 -57.94 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.43 Total: 39.08 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 4.57 Total: -11.19 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -1.64 Total: -71.37 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -2.00 Total: -57.70 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -61.31 3.37 -57.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.061 kcal (2) G-P(sol) polarization free energy of solvation -61.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds