Wall clock time and date at job start Fri Apr 10 2020 23:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 120.00151 * 2 1 4 4 N 1.46502 * 109.47399 * 124.99820 * 3 2 1 5 5 C 1.34773 * 119.99594 * 89.99861 * 4 3 2 6 6 O 1.21281 * 119.99717 * 174.70292 * 5 4 3 7 7 C 1.50702 * 120.00555 * 354.70379 * 5 4 3 8 8 C 1.50691 * 109.47212 * 185.04633 * 7 5 4 9 9 C 1.38299 * 119.93603 * 89.99855 * 8 7 5 10 10 C 1.38095 * 120.07482 * 179.97438 * 9 8 7 11 11 C 1.38882 * 119.92822 * 0.02562 * 10 9 8 12 12 O 1.35754 * 120.06797 * 180.02562 * 11 10 9 13 13 C 1.34829 * 117.00203 * 5.51316 * 12 11 10 14 14 H 1.08005 * 119.99558 * 354.94507 * 13 12 11 15 15 C 1.38650 * 120.00020 * 174.94601 * 13 12 11 16 16 N 1.31557 * 119.99936 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00259 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47220 * 89.99922 * 17 15 13 19 19 H 1.48497 * 109.47636 * 210.00197 * 17 15 13 20 20 H 1.48504 * 109.47033 * 329.99812 * 17 15 13 21 21 C 1.38874 * 119.86138 * 0.27013 * 11 10 9 22 22 C 1.38103 * 119.93390 * 359.45379 * 21 11 10 23 23 C 1.46499 * 120.00145 * 270.00181 * 4 3 2 24 24 C 1.52992 * 109.47143 * 244.69808 * 23 4 3 25 25 C 1.53005 * 109.47067 * 4.69946 * 23 4 3 26 26 C 1.52999 * 109.47250 * 124.69664 * 23 4 3 27 27 H 1.07999 * 120.00144 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00118 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.00118 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46689 * 4.99783 * 3 2 1 31 31 H 1.08997 * 109.47115 * 245.00009 * 3 2 1 32 32 H 1.08999 * 109.46980 * 65.04007 * 7 5 4 33 33 H 1.09002 * 109.46737 * 305.04819 * 7 5 4 34 34 H 1.08000 * 119.96176 * 0.02562 * 9 8 7 35 35 H 1.08000 * 120.03667 * 180.02562 * 10 9 8 36 36 H 0.96999 * 120.00303 * 179.97438 * 16 15 13 37 37 H 1.08007 * 120.03440 * 179.72307 * 21 11 10 38 38 H 1.07996 * 119.96779 * 180.27666 * 22 21 11 39 39 H 1.09003 * 109.47428 * 64.89248 * 24 23 4 40 40 H 1.08997 * 109.47525 * 184.88818 * 24 23 4 41 41 H 1.09006 * 109.47325 * 304.89563 * 24 23 4 42 42 H 1.09002 * 109.47267 * 59.99748 * 25 23 4 43 43 H 1.09002 * 109.46858 * 179.97438 * 25 23 4 44 44 H 1.08999 * 109.46813 * 299.99823 * 25 23 4 45 45 H 1.08999 * 109.46631 * 65.25821 * 26 23 4 46 46 H 1.08995 * 109.47606 * 185.25946 * 26 23 4 47 47 H 1.09000 * 109.47449 * 305.26752 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.2496 0.8662 0.9824 6 8 5.0486 0.9759 1.8882 7 6 4.6613 0.2091 -0.3099 8 6 6.0623 -0.3293 -0.1756 9 6 6.2651 -1.6202 0.2771 10 6 7.5478 -2.1168 0.4008 11 6 8.6348 -1.3180 0.0704 12 8 9.8969 -1.8034 0.1904 13 6 10.0236 -3.1032 0.5257 14 1 9.1471 -3.6869 0.7655 15 6 11.2791 -3.6904 0.5628 16 7 11.4027 -4.9587 0.8895 17 14 12.7950 -2.6810 0.1474 18 1 13.3256 -2.0529 1.3841 19 1 13.8319 -3.5649 -0.4429 20 1 12.4326 -1.6225 -0.8291 21 6 8.4282 -0.0200 -0.3781 22 6 7.1428 0.4688 -0.5050 23 6 2.5589 1.8650 2.4249 24 6 3.3639 3.1235 2.7545 25 6 1.0707 2.2144 2.3581 26 6 2.7876 0.8138 3.5127 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 4.6293 0.9418 -1.1163 33 1 3.9775 -0.6093 -0.5352 34 1 5.4194 -2.2410 0.5335 35 1 7.7054 -3.1251 0.7540 36 1 12.2809 -5.3697 0.9151 37 1 9.2717 0.6051 -0.6315 38 1 6.9813 1.4766 -0.8580 39 1 3.1342 3.9027 2.0277 40 1 3.1025 3.4707 3.7541 41 1 4.4289 2.8940 2.7166 42 1 0.4971 1.3178 2.1232 43 1 0.7471 2.6106 3.3207 44 1 0.9078 2.9634 1.5832 45 1 3.8567 0.6333 3.6244 46 1 2.3792 1.1733 4.4571 47 1 2.2900 -0.1144 3.2315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857650696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:38 Heat of formation + Delta-G solvation = -32.034854 kcal Electronic energy + Delta-G solvation = -26652.789931 eV Core-core repulsion = 22994.481076 eV Total energy + Delta-G solvation = -3658.308856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54307 -40.76184 -38.67599 -37.67880 -35.63149 -34.51096 -33.37341 -32.34640 -31.80924 -28.64466 -28.35660 -28.18768 -26.79815 -26.43622 -23.72793 -23.00513 -21.46384 -20.93395 -19.82939 -19.33843 -19.08649 -17.71324 -17.44739 -16.78979 -16.46446 -16.14092 -15.79576 -15.67435 -15.43867 -15.27108 -15.07072 -14.69576 -14.47628 -14.34900 -14.22593 -14.10189 -14.04582 -13.44001 -13.20990 -13.08976 -12.99597 -12.81682 -12.67543 -12.49887 -12.47952 -12.35444 -12.29489 -12.10691 -11.94793 -11.92886 -11.84692 -11.28986 -10.92651 -10.45257 -10.23445 -9.79874 -9.56483 -8.97979 -8.51330 -6.23929 0.57534 0.61407 1.29585 1.32852 1.35147 1.50515 1.77299 2.21193 2.27216 2.76551 3.05120 3.15606 3.68899 3.88578 3.97329 4.00795 4.07699 4.14269 4.15477 4.21233 4.25189 4.41309 4.53171 4.56092 4.63864 4.68818 4.71166 4.75923 4.79891 4.82843 4.87411 4.96204 4.99023 5.03973 5.13969 5.23893 5.24281 5.33963 5.38130 5.42426 5.55842 5.70832 5.73307 5.78714 5.81125 5.90172 5.97259 6.23527 6.54540 6.82896 7.36921 7.57688 8.60616 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.002717 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.324988 B =10303.966871 C =10554.432363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.124 3.876 4 N -0.601 5.601 5 C 0.511 3.489 6 O -0.565 6.565 7 C -0.081 4.081 8 C -0.134 4.134 9 C -0.066 4.066 10 C -0.237 4.237 11 C 0.119 3.881 12 O -0.246 6.246 13 C -0.400 4.400 14 H 0.078 0.922 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.265 1.265 20 H -0.262 1.262 21 C -0.192 4.192 22 C -0.057 4.057 23 C 0.168 3.832 24 C -0.158 4.158 25 C -0.149 4.149 26 C -0.160 4.160 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.548 17.293 -3.328 31.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C 0.003 3.997 4 N -0.334 5.334 5 C 0.301 3.699 6 O -0.443 6.443 7 C -0.120 4.120 8 C -0.135 4.135 9 C -0.084 4.084 10 C -0.257 4.257 11 C 0.070 3.930 12 O -0.154 6.154 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.794 3.206 18 H -0.192 1.192 19 H -0.189 1.189 20 H -0.186 1.186 21 C -0.211 4.211 22 C -0.075 4.075 23 C 0.084 3.916 24 C -0.216 4.216 25 C -0.207 4.207 26 C -0.218 4.218 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.788 17.299 -2.837 31.182 hybrid contribution 1.042 -0.822 0.394 1.385 sum -24.746 16.477 -2.442 29.830 Atomic orbital electron populations 1.24020 0.95397 1.02937 0.98257 1.23323 0.96751 0.98662 1.01856 1.21047 0.93027 0.96605 0.89011 1.48234 1.11223 1.61782 1.12148 1.21015 0.81516 0.77696 0.89717 1.90692 1.52312 1.57345 1.43985 1.20620 0.93192 1.02207 0.95997 1.19282 0.95183 0.93897 1.05094 1.20853 0.95116 0.95891 0.96565 1.21225 0.93677 1.01074 1.09677 1.19655 0.84120 0.94239 0.94988 1.83507 1.24625 1.27049 1.80187 1.20710 0.96264 0.83525 1.47133 0.90411 1.25295 1.01133 0.96494 0.95954 1.69731 1.26435 1.11994 1.48403 0.85200 0.77384 0.78553 0.79461 1.19244 1.18910 1.18601 1.20495 0.98951 0.93416 1.08258 1.20905 0.90223 0.99422 0.96975 1.20436 0.95795 0.92846 0.82513 1.22168 1.00510 0.96793 1.02140 1.22193 0.91846 1.02771 1.03849 1.22168 1.01931 0.98750 0.98937 0.88185 0.86757 0.88294 0.87300 0.87949 0.85271 0.86668 0.85376 0.87660 0.90536 0.85407 0.83106 0.91612 0.91115 0.93838 0.91038 0.90380 0.90286 0.93781 0.90732 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 13.10 67.79 0.89 -0.40 16 2 C -0.19 -1.93 9.01 25.65 0.23 -1.70 16 3 C 0.12 1.21 4.97 85.63 0.43 1.64 16 4 N -0.60 -10.41 2.41 -779.08 -1.87 -12.28 16 5 C 0.51 12.67 7.05 87.66 0.62 13.29 16 6 O -0.56 -19.77 12.32 -3.03 -0.04 -19.81 16 7 C -0.08 -1.71 4.40 29.10 0.13 -1.58 16 8 C -0.13 -4.26 4.38 -19.84 -0.09 -4.35 16 9 C -0.07 -2.50 9.69 22.25 0.22 -2.28 16 10 C -0.24 -11.29 9.17 22.39 0.21 -11.09 16 11 C 0.12 5.96 6.65 22.58 0.15 6.11 16 12 O -0.25 -14.13 8.59 -22.77 -0.20 -14.32 16 13 C -0.40 -24.71 9.95 67.92 0.68 -24.04 16 14 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 15 C 0.01 0.56 5.49 84.83 0.47 1.03 16 16 N -0.92 -57.02 13.96 21.61 0.30 -56.71 16 17 Si 0.97 47.13 28.62 68.60 1.96 49.09 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.19 -7.94 9.99 22.39 0.22 -7.71 16 22 C -0.06 -1.91 9.69 22.25 0.22 -1.69 16 23 C 0.17 2.88 1.03 3.60 0.00 2.89 16 24 C -0.16 -2.99 8.52 71.98 0.61 -2.37 16 25 C -0.15 -1.45 7.33 71.98 0.53 -0.92 16 26 C -0.16 -3.45 8.23 71.98 0.59 -2.86 16 27 H 0.10 0.76 8.06 -2.91 -0.02 0.73 16 28 H 0.11 0.49 7.84 -2.91 -0.02 0.46 16 29 H 0.10 1.28 7.46 -2.91 -0.02 1.26 16 30 H 0.11 0.62 5.47 -2.39 -0.01 0.61 16 31 H 0.10 0.72 6.62 -2.39 -0.02 0.71 16 32 H 0.13 1.84 7.45 -2.39 -0.02 1.83 16 33 H 0.12 1.95 7.11 -2.39 -0.02 1.93 16 34 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.11 5.48 5.64 -2.91 -0.02 5.47 16 36 H 0.29 16.06 8.31 -92.71 -0.77 15.28 16 37 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.16 6.24 -2.38 -0.01 1.14 16 42 H 0.07 0.66 6.11 -2.39 -0.01 0.65 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.51 6.70 -2.39 -0.02 0.49 16 45 H 0.04 1.30 6.20 -2.39 -0.01 1.29 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -77.43 375.38 7.21 -70.22 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.96 Total: 19.86 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 6.09 Total: -36.05 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.57 Total: -69.00 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.23 Total: -34.13 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.96 Total: 49.09 kcal Total: -77.43 7.21 -70.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857650696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.190 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds