Wall clock time and date at job start Fri Apr 10 2020 23:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99943 * 2 1 4 4 C 1.50697 * 119.99877 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.47315 * 95.00022 * 4 2 1 6 6 H 1.08993 * 109.46874 * 304.99834 * 5 4 2 7 7 C 1.53001 * 109.46994 * 184.99639 * 5 4 2 8 8 O 1.42894 * 109.47569 * 304.99832 * 7 5 4 9 9 N 1.46500 * 109.47071 * 64.99944 * 5 4 2 10 10 C 1.34778 * 119.99851 * 205.00150 * 9 5 4 11 11 O 1.21276 * 119.99987 * 359.97438 * 10 9 5 12 12 C 1.50696 * 119.99976 * 179.97438 * 10 9 5 13 13 C 1.52997 * 109.47223 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47387 * 304.99996 * 13 12 10 15 15 C 1.50703 * 109.46871 * 65.00310 * 13 12 10 16 16 H 1.07997 * 120.00039 * 29.58786 * 15 13 12 17 17 C 1.37878 * 119.99617 * 209.58558 * 15 13 12 18 18 N 1.31512 * 120.00165 * 4.94040 * 17 15 13 19 19 Si 1.86805 * 119.99702 * 184.93790 * 17 15 13 20 20 H 1.48503 * 109.47135 * 90.00024 * 19 17 15 21 21 H 1.48500 * 109.47236 * 209.99798 * 19 17 15 22 22 H 1.48502 * 109.46989 * 330.00025 * 19 17 15 23 23 C 1.50697 * 109.47248 * 185.00037 * 13 12 10 24 24 C 1.38234 * 120.00369 * 296.77277 * 23 13 12 25 25 C 1.38240 * 120.00142 * 179.78602 * 24 23 13 26 26 C 1.38231 * 119.99718 * 0.44291 * 25 24 23 27 27 C 1.38230 * 120.00265 * 359.80888 * 26 25 24 28 28 C 1.38234 * 120.00100 * 359.97438 * 27 26 25 29 29 H 1.07996 * 119.99665 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99747 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46578 * 270.00083 * 3 2 1 32 32 H 1.08994 * 109.47492 * 29.99430 * 3 2 1 33 33 H 1.08996 * 109.47289 * 150.00095 * 3 2 1 34 34 H 1.09005 * 109.47548 * 334.99783 * 4 2 1 35 35 H 1.09001 * 109.46994 * 215.00302 * 4 2 1 36 36 H 1.08999 * 109.47191 * 65.00265 * 7 5 4 37 37 H 1.09007 * 109.46667 * 184.99957 * 7 5 4 38 38 H 0.96696 * 114.00349 * 180.02562 * 8 7 5 39 39 H 0.97001 * 120.00200 * 24.99514 * 9 5 4 40 40 H 1.09007 * 109.46968 * 60.00004 * 12 10 9 41 41 H 1.08997 * 109.47483 * 300.00258 * 12 10 9 42 42 H 0.97002 * 119.99523 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.99979 * 359.97438 * 24 23 13 44 44 H 1.08002 * 119.99503 * 180.27460 * 25 24 23 45 45 H 1.08001 * 119.99520 * 179.83248 * 26 25 24 46 46 H 1.08003 * 120.00157 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.00065 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 1 1.5246 -1.7043 -2.0465 7 6 3.0815 -3.0677 -1.4483 8 8 4.1985 -3.0742 -0.5570 9 7 3.3631 -0.6971 -1.9801 10 6 3.4421 -0.5057 -3.3118 11 8 2.7389 -1.1512 -4.0600 12 6 4.4041 0.5104 -3.8712 13 6 4.2961 0.5289 -5.3973 14 1 4.4532 -0.4777 -5.7849 15 6 2.9266 1.0136 -5.7981 16 1 2.3911 1.7041 -5.1635 17 6 2.3575 0.5755 -6.9750 18 7 2.9656 -0.3384 -7.6993 19 14 0.7225 1.2801 -7.5408 20 1 0.9653 2.4725 -8.3920 21 1 -0.0141 0.2552 -8.3232 22 1 -0.0834 1.6728 -6.3569 23 6 5.3421 1.4541 -5.9637 24 6 5.3056 2.8035 -5.6661 25 6 6.2677 3.6515 -6.1822 26 6 7.2609 3.1515 -7.0032 27 6 7.2945 1.8029 -7.3051 28 6 6.3351 0.9542 -6.7854 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 2.2451 1.6197 -1.0277 32 1 1.4745 2.0648 0.5137 33 1 3.0159 1.1748 0.5138 34 1 1.4386 -2.0853 0.4353 35 1 2.9742 -1.1986 0.5900 36 1 2.3563 -3.8154 -1.1275 37 1 3.4209 -3.3002 -2.4578 38 1 4.6626 -3.9214 -0.5142 39 1 3.9257 -0.1811 -1.3817 40 1 5.4212 0.2452 -3.5825 41 1 4.1602 1.4971 -3.4774 42 1 2.5652 -0.6463 -8.5275 43 1 4.5271 3.1949 -5.0280 44 1 6.2416 4.7050 -5.9460 45 1 8.0110 3.8144 -7.4086 46 1 8.0704 1.4123 -7.9469 47 1 6.3610 -0.0993 -7.0216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882899959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:56 Heat of formation + Delta-G solvation = -58.591430 kcal Electronic energy + Delta-G solvation = -27050.678321 eV Core-core repulsion = 23391.217886 eV Total energy + Delta-G solvation = -3659.460435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.40371 -38.33641 -37.19539 -35.98804 -34.04659 -33.39522 -31.45770 -30.29266 -29.98109 -28.49749 -27.18650 -26.15661 -25.43792 -22.89211 -21.65668 -21.19090 -19.96290 -19.24784 -18.47506 -17.39471 -16.58692 -16.17457 -15.81715 -15.54502 -15.04303 -14.70811 -14.41925 -14.09999 -13.95806 -13.80601 -13.78801 -13.55855 -13.09364 -12.74658 -12.56818 -12.37986 -12.10101 -11.96729 -11.81383 -11.70218 -11.55356 -11.45043 -11.16040 -10.85764 -10.79527 -10.63456 -10.54455 -10.23976 -10.01730 -9.99789 -9.39639 -9.06608 -9.02872 -8.73966 -8.42535 -8.27356 -8.02443 -7.59248 -5.89335 -3.88076 2.27315 2.30925 2.36778 3.38995 3.44879 3.47638 3.62515 3.77111 4.36038 4.54392 4.75386 4.77276 4.94042 5.05614 5.35818 5.42702 5.44915 5.45343 5.61728 5.67886 5.71641 5.73071 5.75264 5.85014 5.86429 5.91724 5.98754 6.03365 6.15713 6.21175 6.25772 6.33335 6.43419 6.57161 6.66343 6.83714 6.89672 6.94283 7.06341 7.07598 7.33038 7.47966 7.56681 7.61004 7.92066 7.97320 8.08916 8.22964 8.42947 9.10931 9.19322 9.72558 11.20816 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010982 B = 0.004330 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.073561 B = 6464.738956 C = 7274.637170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.087 4.087 5 C 0.158 3.842 6 H 0.097 0.903 7 C 0.062 3.938 8 O -0.569 6.569 9 N -0.735 5.735 10 C 0.512 3.488 11 O -0.498 6.498 12 C -0.121 4.121 13 C 0.079 3.921 14 H 0.072 0.928 15 C -0.488 4.488 16 H 0.050 0.950 17 C 0.076 3.924 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.022 4.022 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.374 0.626 39 H 0.393 0.607 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.258 0.742 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -0.849 14.572 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.117 4.117 3 C -0.177 4.177 4 C -0.124 4.124 5 C 0.052 3.948 6 H 0.115 0.885 7 C -0.017 4.017 8 O -0.374 6.374 9 N -0.390 5.390 10 C 0.299 3.701 11 O -0.370 6.370 12 C -0.162 4.162 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.525 4.525 16 H 0.068 0.932 17 C -0.127 4.127 18 N -0.518 5.518 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.023 4.023 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.220 0.780 39 H 0.227 0.773 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.545 -0.822 13.893 14.148 hybrid contribution -0.633 0.075 -0.421 0.764 sum 1.912 -0.747 13.471 13.627 Atomic orbital electron populations 1.23629 0.95282 1.01665 1.03333 1.21706 0.95338 0.95777 0.98852 1.20904 0.99757 0.94379 1.02669 1.20879 1.00513 0.94712 0.96328 1.20857 0.93182 0.86773 0.93947 0.88477 1.22716 0.88103 0.97480 0.93372 1.86444 1.45849 1.38792 1.66339 1.46154 1.42999 1.42185 1.07664 1.20886 0.84135 0.84126 0.80933 1.90755 1.42002 1.46754 1.57463 1.21755 0.96406 0.97247 1.00752 1.17825 0.92582 0.96633 0.86925 0.90999 1.20669 0.99541 1.26751 1.05563 0.93207 1.24806 0.96698 0.94208 0.96946 1.69906 1.39115 1.28430 1.14387 0.86727 0.84631 0.78688 0.78697 1.20926 1.21407 1.20068 1.20772 0.92504 0.94913 0.94075 1.20952 0.97735 0.93676 1.00886 1.20977 0.96171 0.98664 0.99234 1.20791 0.99813 0.95353 1.01425 1.20981 0.99248 0.93894 1.00550 1.21099 0.94648 0.99541 0.98453 0.88711 0.88672 0.90766 0.92209 0.92023 0.90545 0.90065 0.93498 0.92606 0.77975 0.77344 0.91768 0.90706 0.93239 0.86887 0.87686 0.87829 0.87668 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.35 13.89 29.01 0.40 -1.94 16 2 C -0.12 -1.37 5.14 -101.07 -0.52 -1.89 16 3 C -0.12 -1.31 9.08 36.00 0.33 -0.98 16 4 C -0.09 -0.97 4.64 -27.89 -0.13 -1.10 16 5 C 0.16 2.19 2.36 -67.93 -0.16 2.03 16 6 H 0.10 1.58 7.58 -51.93 -0.39 1.19 16 7 C 0.06 0.78 6.85 37.16 0.25 1.04 16 8 O -0.57 -6.39 12.83 -35.23 -0.45 -6.84 16 9 N -0.73 -11.13 4.36 -53.81 -0.23 -11.37 16 10 C 0.51 10.17 7.54 -10.99 -0.08 10.09 16 11 O -0.50 -12.32 14.65 5.56 0.08 -12.23 16 12 C -0.12 -2.36 4.94 -27.89 -0.14 -2.50 16 13 C 0.08 1.90 1.68 -92.92 -0.16 1.74 16 14 H 0.07 1.99 6.95 -51.93 -0.36 1.63 16 15 C -0.49 -13.14 6.38 -34.44 -0.22 -13.36 16 16 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.88 -26.05 12.85 55.43 0.71 -25.34 16 19 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 24 C -0.11 -2.32 8.86 -39.58 -0.35 -2.67 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.73 10.05 -39.59 -0.40 -3.13 16 27 C -0.13 -2.40 10.05 -39.59 -0.40 -2.79 16 28 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 29 H 0.09 1.02 7.99 -52.49 -0.42 0.60 16 30 H 0.09 1.05 8.04 -52.49 -0.42 0.63 16 31 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.08 0.77 7.99 -51.93 -0.41 0.36 16 35 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.37 2.68 9.12 45.56 0.42 3.09 16 39 H 0.39 5.10 8.08 -40.82 -0.33 4.77 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.35 7.76 -51.93 -0.40 0.94 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.11 2.21 7.75 -52.49 -0.41 1.80 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -32.84 392.81 -8.83 -41.68 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.89 Total: 10.96 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -2.95 Total: -20.11 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.48 Total: -36.71 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.37 Total: -19.08 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.84 -8.83 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882899959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.915 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds