Wall clock time and date at job start Fri Apr 10 2020 23:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47470 * 2 1 4 4 H 1.08996 * 109.51272 * 304.89989 * 3 2 1 5 5 C 1.52876 * 109.62539 * 184.90698 * 3 2 1 6 6 N 1.47153 * 108.60633 * 187.89797 * 5 3 2 7 7 C 1.34777 * 120.98232 * 230.49922 * 6 5 3 8 8 O 1.21549 * 120.00419 * 173.86454 * 7 6 5 9 9 C 1.47886 * 119.99842 * 353.85972 * 7 6 5 10 10 C 1.39921 * 120.02750 * 328.65359 * 9 7 6 11 11 C 1.38330 * 120.35855 * 179.97438 * 10 9 7 12 12 C 1.37749 * 120.41262 * 359.69197 * 11 10 9 13 13 C 1.40747 * 120.03742 * 0.56123 * 12 11 10 14 14 C 1.41445 * 120.17897 * 179.74195 * 13 12 11 15 15 H 1.08002 * 119.99943 * 29.00049 * 14 13 12 16 16 C 1.39935 * 120.00441 * 208.99807 * 14 13 12 17 17 N 1.30834 * 119.99703 * 10.59434 * 16 14 13 18 18 Si 1.86799 * 120.00163 * 190.59061 * 16 14 13 19 19 H 1.48501 * 109.47062 * 60.00208 * 18 16 14 20 20 H 1.48500 * 109.46882 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47319 * 299.99882 * 18 16 14 22 22 C 1.39003 * 120.02494 * 148.62531 * 9 7 6 23 23 C 1.47149 * 118.03598 * 50.22910 * 6 5 3 24 24 C 1.53295 * 108.38257 * 309.71149 * 23 6 5 25 25 H 1.09000 * 109.51336 * 292.32693 * 24 23 6 26 26 C 1.53001 * 109.51091 * 172.22838 * 24 23 6 27 27 C 1.53002 * 109.46899 * 175.00092 * 26 24 23 28 28 O 1.42955 * 109.22347 * 52.30503 * 24 23 6 29 29 H 1.09001 * 109.47283 * 300.00396 * 1 2 3 30 30 H 1.08999 * 109.46915 * 59.99662 * 1 2 3 31 31 H 1.08991 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47283 * 239.99604 * 2 1 3 33 33 H 1.09000 * 109.46959 * 119.99785 * 2 1 3 34 34 H 1.08994 * 109.62287 * 68.07676 * 5 3 2 35 35 H 1.09003 * 109.52538 * 307.65769 * 5 3 2 36 36 H 1.07994 * 119.81988 * 359.97128 * 10 9 7 37 37 H 1.07999 * 119.79472 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.98163 * 180.30290 * 12 11 10 39 39 H 0.96994 * 120.00029 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.19925 * 0.02562 * 22 9 7 41 41 H 1.08996 * 109.68576 * 69.43589 * 23 6 5 42 42 H 1.09010 * 109.67971 * 189.95647 * 23 6 5 43 43 H 1.08996 * 109.47285 * 294.99965 * 26 24 23 44 44 H 1.08999 * 109.47035 * 55.00490 * 26 24 23 45 45 H 1.08999 * 109.46952 * 60.00347 * 27 26 24 46 46 H 1.09007 * 109.46921 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47049 * 300.00018 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9817 -0.8426 5 6 3.5639 1.4482 -0.1232 6 7 4.0453 2.8254 0.0696 7 6 4.8929 3.3937 -0.8108 8 8 5.1918 4.5663 -0.6965 9 6 5.4593 2.5905 -1.9158 10 6 5.6924 1.2222 -1.7388 11 6 6.2216 0.4643 -2.7680 12 6 6.5192 1.0461 -3.9806 13 6 6.2966 2.4221 -4.1755 14 6 6.6062 3.0236 -5.4177 15 1 6.5588 2.4416 -6.3262 16 6 6.9740 4.3727 -5.4695 17 7 7.2333 5.0230 -4.3642 18 14 7.0949 5.2453 -7.1167 19 1 5.7744 5.2072 -7.7951 20 1 7.5001 6.6574 -6.9002 21 1 8.1067 4.5649 -7.9643 22 6 5.7601 3.1942 -3.1312 23 6 3.5691 3.5658 1.2488 24 6 2.0409 3.4587 1.3022 25 1 1.6081 4.0060 0.4648 26 6 1.5327 4.0520 2.6178 27 6 0.0027 4.0586 2.6169 28 8 1.6623 2.0826 1.2212 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8524 1.0936 -1.1126 35 1 3.9935 0.7990 0.6398 36 1 5.4580 0.7553 -0.7937 37 1 6.3982 -0.5910 -2.6214 38 1 6.9275 0.4468 -4.7810 39 1 7.4886 5.9580 -4.4001 40 1 5.5818 4.2499 -3.2722 41 1 3.9992 3.1334 2.1521 42 1 3.8617 4.6127 1.1676 43 1 1.8930 3.4492 3.4513 44 1 1.9004 5.0728 2.7220 45 1 -0.3649 3.0378 2.5127 46 1 -0.3593 4.4809 3.5544 47 1 -0.3575 4.6614 1.7833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421962922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:04 Heat of formation + Delta-G solvation = -66.810460 kcal Electronic energy + Delta-G solvation = -27300.306268 eV Core-core repulsion = 23640.489429 eV Total energy + Delta-G solvation = -3659.816839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28892 -38.44866 -37.00745 -35.20113 -34.49785 -33.64272 -32.60320 -30.59056 -29.51904 -29.16404 -27.53172 -25.51245 -24.23221 -23.71816 -21.73368 -21.29830 -21.03254 -20.63504 -18.85714 -17.55858 -16.88266 -16.17409 -15.87808 -15.47632 -15.12179 -15.01671 -14.64545 -14.44615 -14.01388 -13.86681 -13.59655 -13.48864 -13.25882 -12.84706 -12.78377 -12.58108 -12.24553 -12.08193 -11.85173 -11.80364 -11.68252 -11.24878 -11.19915 -11.15163 -11.01977 -10.92300 -10.88289 -10.73021 -10.56373 -10.31745 -10.09525 -9.91787 -9.69776 -9.27562 -8.98022 -8.22744 -7.64881 -7.48868 -6.75562 -4.46193 2.21440 2.77522 3.06233 3.08081 3.11699 3.25671 3.61771 3.70221 3.91054 4.55848 4.58645 4.85042 4.88301 4.97755 5.03586 5.07269 5.22017 5.27438 5.32439 5.41995 5.50267 5.58806 5.66045 5.71250 5.74993 5.79474 5.82006 5.87492 5.90472 5.99299 5.99988 6.08386 6.14591 6.19264 6.25109 6.26808 6.62802 6.78353 6.95602 6.98885 7.18801 7.23479 7.34433 7.60854 7.71708 7.82641 7.95882 8.13175 8.46667 8.77468 8.78946 8.83217 10.18021 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.003608 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.418642 B = 7759.157865 C = 8542.972358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.061 0.939 5 C 0.066 3.934 6 N -0.620 5.620 7 C 0.568 3.432 8 O -0.540 6.540 9 C -0.126 4.126 10 C -0.224 4.224 11 C -0.099 4.099 12 C -0.207 4.207 13 C 0.101 3.899 14 C -0.462 4.462 15 H 0.080 0.920 16 C 0.071 3.929 17 N -0.790 5.790 18 Si 0.913 3.087 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.090 4.090 23 C 0.084 3.916 24 C 0.080 3.920 25 H 0.061 0.939 26 C -0.113 4.113 27 C -0.147 4.147 28 O -0.373 6.373 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.131 0.869 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 -5.462 9.748 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.079 0.921 5 C -0.057 4.057 6 N -0.354 5.354 7 C 0.360 3.640 8 O -0.417 6.417 9 C -0.129 4.129 10 C -0.244 4.244 11 C -0.118 4.118 12 C -0.227 4.227 13 C 0.099 3.901 14 C -0.492 4.492 15 H 0.098 0.902 16 C -0.148 4.148 17 N -0.415 5.415 18 Si 0.737 3.263 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.111 4.111 23 C -0.039 4.039 24 C 0.021 3.979 25 H 0.079 0.921 26 C -0.151 4.151 27 C -0.205 4.205 28 O -0.292 6.292 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.396 -4.656 10.034 15.882 hybrid contribution 0.414 0.540 -0.805 1.054 sum -10.982 -4.116 9.229 14.924 Atomic orbital electron populations 1.21688 0.95220 1.01352 1.02197 1.21484 0.96688 0.93835 1.03057 1.22527 0.94000 0.94386 0.87304 0.92091 1.22981 0.93762 0.83497 1.05415 1.48014 1.47641 1.14750 1.25041 1.19003 0.77140 0.86643 0.81200 1.90706 1.60380 1.16557 1.74063 1.19431 1.05469 0.93610 0.94410 1.20662 1.11694 0.92843 0.99155 1.20470 0.99754 0.97530 0.94010 1.21163 1.08514 0.96162 0.96873 1.17589 0.88545 0.90900 0.93069 1.19548 1.40814 0.94766 0.94051 0.90199 1.25957 0.92911 0.97601 0.98305 1.69765 1.31877 1.11244 1.28596 0.86285 0.79738 0.78376 0.81854 1.18833 1.20246 1.18985 1.21592 0.97640 1.00434 0.91389 1.22200 0.94060 0.99304 0.88386 1.22483 0.93489 0.83310 0.98571 0.92120 1.21489 0.96789 1.00745 0.96068 1.21691 0.95127 1.02392 1.01246 1.87880 1.79858 1.23276 1.38229 0.92105 0.92930 0.92826 0.90080 0.91023 0.85672 0.91329 0.88002 0.88757 0.88536 0.90440 0.85163 0.91363 0.88428 0.90982 0.90431 0.91948 0.92845 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.81 37.16 0.36 -1.03 16 2 C -0.11 -1.17 5.65 -26.73 -0.15 -1.32 16 3 C 0.08 0.99 2.76 -26.80 -0.07 0.91 16 4 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.07 0.98 4.14 -3.75 -0.02 0.96 16 6 N -0.62 -10.95 3.03 -173.63 -0.53 -11.47 16 7 C 0.57 12.69 7.44 -12.31 -0.09 12.59 16 8 O -0.54 -13.76 16.20 5.32 0.09 -13.68 16 9 C -0.13 -2.95 5.39 -105.03 -0.57 -3.52 16 10 C -0.22 -4.62 7.41 -38.92 -0.29 -4.91 16 11 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 12 C -0.21 -4.81 9.78 -38.81 -0.38 -5.18 16 13 C 0.10 2.64 5.54 -106.87 -0.59 2.05 16 14 C -0.46 -12.01 9.06 -37.73 -0.34 -12.35 16 15 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 16 C 0.07 1.77 5.25 -17.34 -0.09 1.68 16 17 N -0.79 -21.06 10.86 55.55 0.60 -20.45 16 18 Si 0.91 18.73 29.57 -169.99 -5.03 13.70 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.09 -2.38 8.20 -38.44 -0.32 -2.69 16 23 C 0.08 1.25 5.95 -3.54 -0.02 1.23 16 24 C 0.08 1.03 2.78 -26.58 -0.07 0.95 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.11 -1.14 5.64 -26.73 -0.15 -1.29 16 27 C -0.15 -1.36 9.81 37.16 0.36 -0.99 16 28 O -0.37 -4.87 9.11 -35.23 -0.32 -5.19 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.13 1.99 4.53 -51.93 -0.24 1.76 16 35 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 36 H 0.10 1.82 5.57 -52.49 -0.29 1.52 16 37 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.28 7.02 8.30 -40.82 -0.34 6.69 16 40 H 0.13 3.73 6.13 -52.49 -0.32 3.40 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.58 7.06 -51.92 -0.37 1.21 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.61 7.83 -51.93 -0.41 0.21 16 46 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -29.37 373.40 -9.86 -39.23 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.48 Total: 7.60 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.82 Total: -15.36 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.08 Total: -31.93 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.23 Total: -18.87 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.37 -9.86 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421962922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.584 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds