Wall clock time and date at job start Fri Apr 10 2020 23:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47470 * 2 1 4 4 H 1.08996 * 109.51272 * 304.89989 * 3 2 1 5 5 C 1.52876 * 109.62539 * 184.90698 * 3 2 1 6 6 N 1.47153 * 108.60633 * 187.89797 * 5 3 2 7 7 C 1.34777 * 120.98232 * 230.49922 * 6 5 3 8 8 O 1.21549 * 120.00419 * 173.86454 * 7 6 5 9 9 C 1.47886 * 119.99842 * 353.85972 * 7 6 5 10 10 C 1.39921 * 120.02750 * 328.65359 * 9 7 6 11 11 C 1.38330 * 120.35855 * 179.97438 * 10 9 7 12 12 C 1.37749 * 120.41262 * 359.69197 * 11 10 9 13 13 C 1.40747 * 120.03742 * 0.56123 * 12 11 10 14 14 C 1.41445 * 120.17897 * 179.74195 * 13 12 11 15 15 H 1.08002 * 119.99943 * 29.00049 * 14 13 12 16 16 C 1.39935 * 120.00441 * 208.99807 * 14 13 12 17 17 N 1.30834 * 119.99703 * 10.59434 * 16 14 13 18 18 Si 1.86799 * 120.00163 * 190.59061 * 16 14 13 19 19 H 1.48501 * 109.47062 * 60.00208 * 18 16 14 20 20 H 1.48500 * 109.46882 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47319 * 299.99882 * 18 16 14 22 22 C 1.39003 * 120.02494 * 148.62531 * 9 7 6 23 23 C 1.47149 * 118.03598 * 50.22910 * 6 5 3 24 24 C 1.53295 * 108.38257 * 309.71149 * 23 6 5 25 25 H 1.09000 * 109.51336 * 292.32693 * 24 23 6 26 26 C 1.53001 * 109.51091 * 172.22838 * 24 23 6 27 27 C 1.53002 * 109.46899 * 175.00092 * 26 24 23 28 28 O 1.42955 * 109.22347 * 52.30503 * 24 23 6 29 29 H 1.09001 * 109.47283 * 300.00396 * 1 2 3 30 30 H 1.08999 * 109.46915 * 59.99662 * 1 2 3 31 31 H 1.08991 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47283 * 239.99604 * 2 1 3 33 33 H 1.09000 * 109.46959 * 119.99785 * 2 1 3 34 34 H 1.08994 * 109.62287 * 68.07676 * 5 3 2 35 35 H 1.09003 * 109.52538 * 307.65769 * 5 3 2 36 36 H 1.07994 * 119.81988 * 359.97128 * 10 9 7 37 37 H 1.07999 * 119.79472 * 179.97438 * 11 10 9 38 38 H 1.07997 * 119.98163 * 180.30290 * 12 11 10 39 39 H 0.96994 * 120.00029 * 179.97438 * 17 16 14 40 40 H 1.07994 * 120.19925 * 0.02562 * 22 9 7 41 41 H 1.08996 * 109.68576 * 69.43589 * 23 6 5 42 42 H 1.09010 * 109.67971 * 189.95647 * 23 6 5 43 43 H 1.08996 * 109.47285 * 294.99965 * 26 24 23 44 44 H 1.08999 * 109.47035 * 55.00490 * 26 24 23 45 45 H 1.08999 * 109.46952 * 60.00347 * 27 26 24 46 46 H 1.09007 * 109.46921 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47049 * 300.00018 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9817 -0.8426 5 6 3.5639 1.4482 -0.1232 6 7 4.0453 2.8254 0.0696 7 6 4.8929 3.3937 -0.8108 8 8 5.1918 4.5663 -0.6965 9 6 5.4593 2.5905 -1.9158 10 6 5.6924 1.2222 -1.7388 11 6 6.2216 0.4643 -2.7680 12 6 6.5192 1.0461 -3.9806 13 6 6.2966 2.4221 -4.1755 14 6 6.6062 3.0236 -5.4177 15 1 6.5588 2.4416 -6.3262 16 6 6.9740 4.3727 -5.4695 17 7 7.2333 5.0230 -4.3642 18 14 7.0949 5.2453 -7.1167 19 1 5.7744 5.2072 -7.7951 20 1 7.5001 6.6574 -6.9002 21 1 8.1067 4.5649 -7.9643 22 6 5.7601 3.1942 -3.1312 23 6 3.5691 3.5658 1.2488 24 6 2.0409 3.4587 1.3022 25 1 1.6081 4.0060 0.4648 26 6 1.5327 4.0520 2.6178 27 6 0.0027 4.0586 2.6169 28 8 1.6623 2.0826 1.2212 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8524 1.0936 -1.1126 35 1 3.9935 0.7990 0.6398 36 1 5.4580 0.7553 -0.7937 37 1 6.3982 -0.5910 -2.6214 38 1 6.9275 0.4468 -4.7810 39 1 7.4886 5.9580 -4.4001 40 1 5.5818 4.2499 -3.2722 41 1 3.9992 3.1334 2.1521 42 1 3.8617 4.6127 1.1676 43 1 1.8930 3.4492 3.4513 44 1 1.9004 5.0728 2.7220 45 1 -0.3649 3.0378 2.5127 46 1 -0.3593 4.4809 3.5544 47 1 -0.3575 4.6614 1.7833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421962922.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:03 Heat of formation + Delta-G solvation = -82.455361 kcal Electronic energy + Delta-G solvation = -27300.984681 eV Core-core repulsion = 23640.489429 eV Total energy + Delta-G solvation = -3660.495253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70140 -39.90906 -38.78401 -36.30449 -35.87588 -35.41955 -33.45831 -32.26776 -31.34260 -30.32724 -28.79405 -27.32407 -25.41185 -24.97289 -23.10791 -22.88601 -22.09242 -21.87030 -20.48225 -19.29326 -17.98029 -17.76586 -17.49195 -16.88032 -16.67584 -16.52374 -16.00752 -15.66763 -15.39442 -14.99708 -14.91124 -14.59199 -14.49232 -14.31501 -14.26972 -14.21403 -13.56104 -13.36318 -13.17263 -12.96709 -12.82682 -12.66198 -12.59745 -12.53213 -12.23162 -12.13742 -11.99846 -11.97133 -11.77080 -11.71982 -11.58750 -11.44569 -11.12312 -11.10212 -10.68409 -9.69665 -9.39935 -9.33955 -8.61347 -6.41966 0.39336 0.98114 1.35689 1.46502 1.48936 1.78930 1.96886 2.18948 2.60018 2.74819 3.48090 3.62270 3.66541 3.82566 3.90450 4.01332 4.01812 4.21533 4.33626 4.36480 4.39584 4.44540 4.53968 4.58272 4.63378 4.67446 4.71870 4.82500 4.86983 4.90215 5.03183 5.06547 5.09213 5.15931 5.16346 5.18383 5.28136 5.29579 5.41675 5.42968 5.48282 5.50755 5.80749 5.91094 6.02294 6.16448 6.22288 6.29979 6.58379 6.87448 6.92536 7.11343 8.33726 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016029 B = 0.003608 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.418642 B = 7759.157865 C = 8542.972358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.044 0.956 5 C 0.062 3.938 6 N -0.611 5.611 7 C 0.561 3.439 8 O -0.586 6.586 9 C -0.137 4.137 10 C -0.200 4.200 11 C -0.094 4.094 12 C -0.210 4.210 13 C 0.070 3.930 14 C -0.498 4.498 15 H 0.085 0.915 16 C 0.025 3.975 17 N -0.835 5.835 18 Si 0.985 3.015 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.125 4.125 23 C 0.079 3.921 24 C 0.085 3.915 25 H 0.044 0.956 26 C -0.109 4.109 27 C -0.144 4.144 28 O -0.368 6.368 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.284 0.716 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.596 -8.199 11.084 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C 0.020 3.980 4 H 0.062 0.938 5 C -0.060 4.060 6 N -0.343 5.343 7 C 0.353 3.647 8 O -0.468 6.468 9 C -0.140 4.140 10 C -0.219 4.219 11 C -0.112 4.112 12 C -0.229 4.229 13 C 0.068 3.932 14 C -0.528 4.528 15 H 0.103 0.897 16 C -0.188 4.188 17 N -0.462 5.462 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.200 1.200 21 H -0.177 1.177 22 C -0.146 4.146 23 C -0.043 4.043 24 C 0.027 3.973 25 H 0.062 0.938 26 C -0.146 4.146 27 C -0.201 4.201 28 O -0.287 6.287 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.459 -7.454 11.398 18.458 hybrid contribution 0.651 1.224 -1.047 1.738 sum -11.808 -6.230 10.351 16.893 Atomic orbital electron populations 1.21667 0.94596 1.02334 1.01640 1.21511 0.97188 0.91709 1.04155 1.22557 0.92520 0.96068 0.86837 0.93763 1.23190 0.95284 0.81934 1.05599 1.48056 1.45827 1.15992 1.24470 1.18971 0.77931 0.86078 0.81763 1.90673 1.62430 1.18337 1.75330 1.19688 1.05311 0.95161 0.93835 1.21100 1.08807 0.91361 1.00621 1.20949 0.97917 0.99776 0.92536 1.21472 1.07825 0.95082 0.98544 1.17926 0.89415 0.92509 0.93359 1.19853 1.42553 0.95910 0.94500 0.89673 1.26867 0.91948 0.98062 1.01921 1.69899 1.33845 1.11437 1.30994 0.85199 0.80024 0.77071 0.77120 1.18254 1.19959 1.17732 1.21363 1.00623 0.99171 0.93437 1.22436 0.95734 0.98312 0.87801 1.22481 0.91704 0.83415 0.99740 0.93781 1.21509 0.97448 1.01170 0.94497 1.21663 0.94271 1.02122 1.02060 1.87908 1.79615 1.23110 1.38107 0.92706 0.93493 0.91076 0.89012 0.89816 0.86665 0.88757 0.84249 0.83979 0.87059 0.90553 0.88890 0.89242 0.90166 0.89915 0.89569 0.92479 0.91046 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.81 71.98 0.71 -1.66 16 2 C -0.11 -1.89 5.65 30.59 0.17 -1.71 16 3 C 0.08 1.88 2.76 30.55 0.08 1.96 16 4 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 5 C 0.06 1.67 4.14 86.21 0.36 2.02 16 6 N -0.61 -21.23 3.03 -821.52 -2.49 -23.71 16 7 C 0.56 25.77 7.44 86.80 0.65 26.41 16 8 O -0.59 -31.68 16.20 -3.87 -0.06 -31.74 16 9 C -0.14 -6.54 5.39 -20.13 -0.11 -6.64 16 10 C -0.20 -7.79 7.41 22.70 0.17 -7.63 16 11 C -0.09 -3.60 10.01 22.18 0.22 -3.37 16 12 C -0.21 -9.55 9.78 22.77 0.22 -9.33 16 13 C 0.07 3.77 5.54 -21.32 -0.12 3.66 16 14 C -0.50 -27.00 9.06 23.47 0.21 -26.78 16 15 H 0.09 4.31 7.87 -2.91 -0.02 4.29 16 16 C 0.03 1.34 5.25 85.25 0.45 1.79 16 17 N -0.84 -47.53 10.86 21.82 0.24 -47.30 16 18 Si 0.99 39.82 29.57 68.60 2.03 41.85 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 22 C -0.13 -6.97 8.20 23.01 0.19 -6.78 16 23 C 0.08 2.33 5.95 86.35 0.51 2.84 16 24 C 0.09 2.10 2.78 30.69 0.09 2.19 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 C -0.11 -1.98 5.64 30.60 0.17 -1.81 16 27 C -0.14 -2.37 9.81 71.98 0.71 -1.66 16 28 O -0.37 -8.82 9.11 -148.98 -1.36 -10.18 16 29 H 0.05 0.96 7.82 -2.39 -0.02 0.94 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 3.38 4.53 -2.39 -0.01 3.37 16 35 H 0.09 2.15 7.91 -2.39 -0.02 2.13 16 36 H 0.14 4.38 5.57 -2.91 -0.02 4.36 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 39 H 0.28 15.04 8.30 -92.71 -0.77 14.27 16 40 H 0.09 5.81 6.13 -2.91 -0.02 5.79 16 41 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 2.66 7.06 -2.38 -0.02 2.64 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 1.00 7.83 -2.39 -0.02 0.98 16 46 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.94 373.40 3.99 -64.96 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.95 Total: 32.64 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.68 Total: -26.51 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.25 Total: -71.01 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.42 Total: -41.92 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -68.94 3.99 -64.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421962922.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.499 kcal (2) G-P(sol) polarization free energy of solvation -68.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds