Wall clock time and date at job start Fri Apr 10 2020 23:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47289 * 2 1 4 4 H 1.09000 * 109.47520 * 303.99691 * 3 2 1 5 5 C 1.50706 * 109.47524 * 183.99809 * 3 2 1 6 6 O 1.21280 * 119.99924 * 246.45443 * 5 3 2 7 7 N 1.34777 * 119.99552 * 66.44736 * 5 3 2 8 8 C 1.46504 * 119.99518 * 185.30018 * 7 5 3 9 9 C 1.52995 * 109.47309 * 175.21238 * 8 7 5 10 10 C 1.50708 * 115.54849 * 56.05635 * 9 8 7 11 11 H 1.07995 * 120.00165 * 270.93302 * 10 9 8 12 12 C 1.37875 * 119.99715 * 90.93220 * 10 9 8 13 13 N 1.31517 * 120.00125 * 181.81954 * 12 10 9 14 14 Si 1.86806 * 120.00209 * 1.81627 * 12 10 9 15 15 H 1.48497 * 109.46948 * 93.14953 * 14 12 10 16 16 H 1.48497 * 109.47347 * 213.15510 * 14 12 10 17 17 H 1.48501 * 109.46780 * 333.15543 * 14 12 10 18 18 C 1.52993 * 117.49963 * 270.39514 * 9 8 7 19 19 C 1.53000 * 117.50133 * 201.73068 * 9 8 7 20 20 C 1.50701 * 109.47046 * 63.99827 * 3 2 1 21 21 C 1.38263 * 119.94392 * 59.73087 * 20 3 2 22 22 C 1.38150 * 120.05392 * 179.73028 * 21 20 3 23 23 C 1.38732 * 119.94373 * 0.53721 * 22 21 20 24 24 O 1.35896 * 120.05440 * 179.75103 * 23 22 21 25 25 C 1.42897 * 117.00169 * 359.97438 * 24 23 22 26 26 C 1.38738 * 119.88870 * 359.73533 * 23 22 21 27 27 C 1.38140 * 119.94166 * 359.97438 * 26 23 22 28 28 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47183 * 300.00080 * 1 2 3 30 30 H 1.09001 * 109.46634 * 59.99855 * 1 2 3 31 31 H 1.09002 * 109.47041 * 240.00410 * 2 1 3 32 32 H 1.09002 * 109.47082 * 120.00421 * 2 1 3 33 33 H 0.96995 * 120.00484 * 5.30095 * 7 5 3 34 34 H 1.09008 * 109.47107 * 295.20978 * 8 7 5 35 35 H 1.09002 * 109.47618 * 55.20819 * 8 7 5 36 36 H 0.96999 * 120.00059 * 180.02562 * 13 12 10 37 37 H 1.09002 * 117.49985 * 359.97438 * 18 9 8 38 38 H 1.09004 * 117.50430 * 145.01668 * 18 9 8 39 39 H 1.09002 * 117.49569 * 214.97882 * 19 9 8 40 40 H 1.08992 * 117.49635 * 359.97438 * 19 9 8 41 41 H 1.07998 * 119.97038 * 359.97438 * 21 20 3 42 42 H 1.08003 * 120.02429 * 180.26896 * 22 21 20 43 43 H 1.08998 * 109.47114 * 60.00006 * 25 24 23 44 44 H 1.09003 * 109.47190 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.46882 * 299.99665 * 25 24 23 46 46 H 1.07992 * 120.02559 * 179.97438 * 26 23 22 47 47 H 1.08003 * 119.97378 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6195 1.9766 -0.8520 5 6 3.5438 1.4436 -0.0991 6 8 4.2125 1.8412 0.8314 7 7 4.1455 1.0028 -1.2216 8 6 5.6055 0.8944 -1.2759 9 6 6.0210 0.2620 -2.6056 10 6 5.5264 0.9663 -3.8429 11 1 4.5695 0.7024 -4.2684 12 6 6.2955 1.9476 -4.4314 13 7 5.8484 2.5871 -5.4901 14 14 7.9728 2.3689 -3.7252 15 1 9.0167 1.5746 -4.4213 16 1 8.2417 3.8166 -3.9179 17 1 7.9934 2.0503 -2.2749 18 6 6.1333 -1.2628 -2.6582 19 6 7.3982 -0.4009 -2.6730 20 6 1.6202 2.1237 1.2770 21 6 2.0318 1.6182 2.4964 22 6 1.6529 2.2441 3.6682 23 6 0.8496 3.3742 3.6212 24 8 0.4714 3.9888 4.7728 25 6 0.9370 3.4167 5.9967 26 6 0.4333 3.8761 2.3966 27 6 0.8199 3.2501 1.2275 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.6119 0.7572 -1.9935 34 1 6.0469 1.8876 -1.1923 35 1 5.9546 0.2713 -0.4525 36 1 6.3896 3.2772 -5.9043 37 1 5.9117 -1.8156 -1.7452 38 1 5.8500 -1.7568 -3.5877 39 1 7.9465 -0.3279 -3.6123 40 1 8.0085 -0.3861 -1.7701 41 1 2.6532 0.7357 2.5326 42 1 1.9782 1.8514 4.6203 43 1 2.0270 3.4196 6.0075 44 1 0.5642 4.0027 6.8367 45 1 0.5755 2.3917 6.0793 46 1 -0.1924 4.7555 2.3575 47 1 0.4965 3.6406 0.2739 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431133505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:03 Heat of formation + Delta-G solvation = -54.577308 kcal Electronic energy + Delta-G solvation = -26603.724130 eV Core-core repulsion = 22944.437760 eV Total energy + Delta-G solvation = -3659.286370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50548 -40.57047 -39.01297 -38.25067 -35.69337 -34.84193 -34.20448 -31.99685 -31.12942 -29.26600 -28.27854 -27.60196 -26.38072 -23.99858 -23.40865 -22.96624 -22.29848 -21.21749 -20.51935 -19.09170 -18.50157 -17.94847 -17.36139 -16.96597 -16.76082 -16.61659 -16.08085 -15.95824 -15.47502 -15.45495 -15.09062 -14.76559 -14.63814 -14.53880 -14.21765 -14.16919 -13.84289 -13.46088 -13.38480 -13.10555 -12.88461 -12.86772 -12.71840 -12.55506 -12.17945 -12.09204 -11.98379 -11.85743 -11.63802 -11.56815 -11.50147 -10.99853 -10.79520 -10.63198 -10.30246 -9.88682 -9.82525 -9.02415 -8.30072 -6.36077 0.42510 0.47551 1.32172 1.39781 1.49651 1.73745 2.32516 2.36126 2.40533 2.87298 3.05692 3.25569 3.64550 3.78763 3.94387 4.01350 4.04541 4.11198 4.29531 4.34618 4.37072 4.38212 4.40794 4.44898 4.54399 4.55823 4.59133 4.66039 4.73148 4.78303 4.84621 4.87812 4.94946 5.09672 5.12363 5.16149 5.23013 5.27434 5.34794 5.41637 5.46695 5.48699 5.62418 5.71157 5.72523 5.83259 6.28740 6.46278 6.71256 6.78798 7.34466 7.37947 8.84047 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003102 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.360959 B = 9022.851401 C = 9308.270437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.058 4.058 4 H 0.114 0.886 5 C 0.509 3.491 6 O -0.584 6.584 7 N -0.700 5.700 8 C 0.167 3.833 9 C -0.037 4.037 10 C -0.478 4.478 11 H 0.051 0.949 12 C 0.028 3.972 13 N -0.941 5.941 14 Si 0.928 3.072 15 H -0.270 1.270 16 H -0.306 1.306 17 H -0.241 1.241 18 C -0.152 4.152 19 C -0.197 4.197 20 C -0.106 4.106 21 C -0.054 4.054 22 C -0.215 4.215 23 C 0.112 3.888 24 O -0.334 6.334 25 C 0.019 3.981 26 C -0.164 4.164 27 C -0.078 4.078 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.411 0.589 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.141 0.859 43 H 0.056 0.944 44 H 0.121 0.879 45 H 0.065 0.935 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 -4.304 18.214 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.079 4.079 4 H 0.132 0.868 5 C 0.296 3.704 6 O -0.465 6.465 7 N -0.350 5.350 8 C 0.043 3.957 9 C -0.038 4.038 10 C -0.516 4.516 11 H 0.070 0.930 12 C -0.170 4.170 13 N -0.581 5.581 14 Si 0.755 3.245 15 H -0.196 1.196 16 H -0.234 1.234 17 H -0.164 1.164 18 C -0.189 4.189 19 C -0.234 4.234 20 C -0.106 4.106 21 C -0.072 4.072 22 C -0.233 4.233 23 C 0.067 3.933 24 O -0.249 6.249 25 C -0.075 4.075 26 C -0.183 4.183 27 C -0.096 4.096 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.247 0.753 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.134 0.866 42 H 0.159 0.841 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.159 0.841 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.442 -3.755 18.773 22.303 hybrid contribution 1.123 0.407 -0.546 1.313 sum -10.319 -3.348 18.228 21.211 Atomic orbital electron populations 1.21715 0.93459 1.02541 1.02328 1.21501 0.97817 0.91998 1.03024 1.20320 0.89983 0.99822 0.97758 0.86772 1.21078 0.91288 0.76215 0.81814 1.90641 1.67459 1.48573 1.39839 1.45853 1.07761 1.65611 1.15750 1.20776 0.80528 0.98552 0.95869 1.19469 0.97917 0.93183 0.93227 1.20354 1.04840 1.18356 1.08036 0.93037 1.25681 1.01274 0.95458 0.94632 1.70004 1.39497 1.25608 1.22978 0.86069 0.81203 0.75980 0.81292 1.19586 1.23402 1.16423 1.22923 1.00450 0.93067 1.02433 1.22992 0.91467 1.07149 1.01828 1.19307 1.00329 0.97333 0.93668 1.20760 0.95877 0.98958 0.91637 1.21351 1.03779 0.98291 0.99921 1.19192 0.94948 0.92276 0.86842 1.86023 1.71344 1.53849 1.13638 1.23307 1.00188 1.00387 0.83640 1.20568 1.05177 1.02930 0.89589 1.21072 0.96175 0.93755 0.98570 0.91358 0.92848 0.91766 0.90427 0.91744 0.75318 0.95171 0.92404 0.92711 0.87957 0.89517 0.90444 0.88519 0.86597 0.84083 0.92522 0.86107 0.91653 0.84052 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.72 71.98 0.70 -1.74 16 2 C -0.11 -2.20 5.26 30.59 0.16 -2.04 16 3 C -0.06 -1.49 2.38 -12.29 -0.03 -1.52 16 4 H 0.11 2.66 7.87 -2.39 -0.02 2.64 16 5 C 0.51 17.54 6.99 87.66 0.61 18.15 16 6 O -0.58 -24.20 14.91 -3.03 -0.05 -24.24 16 7 N -0.70 -25.11 5.37 -463.04 -2.49 -27.59 16 8 C 0.17 6.72 5.39 86.38 0.47 7.19 16 9 C -0.04 -1.54 0.99 -52.93 -0.05 -1.59 16 10 C -0.48 -24.62 8.77 25.60 0.22 -24.40 16 11 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 12 C 0.03 1.54 5.47 84.65 0.46 2.00 16 13 N -0.94 -56.28 13.96 21.45 0.30 -55.98 16 14 Si 0.93 43.91 24.75 68.60 1.70 45.60 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 17 H -0.24 -10.70 5.81 99.48 0.58 -10.12 16 18 C -0.15 -5.28 9.93 30.62 0.30 -4.98 16 19 C -0.20 -7.50 7.21 30.62 0.22 -7.28 16 20 C -0.11 -2.79 3.39 -19.85 -0.07 -2.86 16 21 C -0.05 -1.46 7.81 22.25 0.17 -1.28 16 22 C -0.21 -5.22 9.04 22.37 0.20 -5.02 16 23 C 0.11 2.77 6.69 22.51 0.15 2.92 16 24 O -0.33 -7.42 10.50 -92.38 -0.97 -8.39 16 25 C 0.02 0.26 9.81 113.37 1.11 1.38 16 26 C -0.16 -3.92 9.99 22.37 0.22 -3.70 16 27 C -0.08 -1.87 9.66 22.25 0.22 -1.65 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.96 7.35 -2.39 -0.02 0.94 16 30 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 32 H 0.06 1.37 7.24 -2.39 -0.02 1.35 16 33 H 0.41 14.00 8.01 -92.71 -0.74 13.26 16 34 H 0.03 1.38 7.32 -2.38 -0.02 1.36 16 35 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.08 3.15 6.64 -2.39 -0.02 3.13 16 40 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.12 3.17 7.33 -2.91 -0.02 3.15 16 42 H 0.14 2.76 6.30 -2.91 -0.02 2.75 16 43 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 44 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 47 H 0.15 2.86 7.94 -2.91 -0.02 2.84 16 Total: -1.00 -67.69 378.82 3.67 -64.03 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.09 Total: 32.99 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.08 Total: -26.41 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.19 Total: -83.58 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -1.01 Total: -32.63 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.70 Total: 45.60 kcal Total: -67.69 3.67 -64.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431133505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.449 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds