Wall clock time and date at job start Fri Apr 10 2020 23:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.08999 * 110.01651 * 306.39208 * 3 2 1 5 5 C 1.54273 * 110.07388 * 67.80535 * 3 2 1 6 6 C 1.54882 * 104.19669 * 142.91827 * 5 3 2 7 7 C 1.54885 * 102.75018 * 322.06185 * 6 5 3 8 8 C 1.53873 * 110.03647 * 184.99651 * 3 2 1 9 9 H 1.09003 * 110.02593 * 359.97438 * 8 3 2 10 10 C 1.52995 * 110.03381 * 121.38026 * 8 3 2 11 11 N 1.46502 * 109.47208 * 185.00419 * 10 8 3 12 12 S 1.65601 * 119.99844 * 165.00072 * 11 10 8 13 13 O 1.42092 * 104.28012 * 308.92558 * 12 11 10 14 14 O 1.42105 * 104.27371 * 181.06764 * 12 11 10 15 15 C 1.81402 * 104.44921 * 64.99986 * 12 11 10 16 16 C 1.53004 * 109.46964 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.47165 * 59.99581 * 16 15 12 18 18 C 1.53002 * 109.46828 * 299.99843 * 16 15 12 19 19 C 1.50698 * 109.46999 * 180.02562 * 16 15 12 20 20 H 1.07995 * 120.00496 * 359.90861 * 19 16 15 21 21 C 1.37882 * 119.99817 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99913 * 1.83354 * 21 19 16 23 23 Si 1.86800 * 119.99892 * 181.84133 * 21 19 16 24 24 H 1.48506 * 109.46708 * 269.99630 * 23 21 19 25 25 H 1.48504 * 109.47245 * 29.99433 * 23 21 19 26 26 H 1.48500 * 109.47117 * 149.99732 * 23 21 19 27 27 H 1.08997 * 109.47632 * 300.00222 * 1 2 3 28 28 H 1.08995 * 109.46887 * 60.00377 * 1 2 3 29 29 H 1.08997 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47632 * 239.99777 * 2 1 3 31 31 H 1.09006 * 109.46912 * 119.99179 * 2 1 3 32 32 H 1.09002 * 110.48628 * 261.59930 * 5 3 2 33 33 H 1.09001 * 110.48533 * 24.10775 * 5 3 2 34 34 H 1.09009 * 110.75486 * 80.37167 * 6 5 3 35 35 H 1.08997 * 110.76000 * 203.55704 * 6 5 3 36 36 H 1.09004 * 110.48231 * 279.26204 * 7 6 5 37 37 H 1.09003 * 110.49256 * 156.62435 * 7 6 5 38 38 H 1.09004 * 109.47366 * 64.99968 * 10 8 3 39 39 H 1.09000 * 109.47432 * 305.00334 * 10 8 3 40 40 H 0.96996 * 119.99943 * 344.99401 * 11 10 8 41 41 H 1.08997 * 109.47104 * 60.00173 * 15 12 11 42 42 H 1.08996 * 109.47099 * 299.99829 * 15 12 11 43 43 H 1.09005 * 109.47191 * 171.65238 * 17 16 15 44 44 H 1.09003 * 109.47480 * 291.64895 * 17 16 15 45 45 H 1.08999 * 109.47096 * 51.65350 * 17 16 15 46 46 H 1.09001 * 109.47634 * 308.63690 * 18 16 15 47 47 H 1.08998 * 109.47479 * 68.63709 * 18 16 15 48 48 H 1.09007 * 109.47063 * 188.64029 * 18 16 15 49 49 H 0.97003 * 119.99980 * 356.07208 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7005 2.1242 1.3416 6 6 2.9286 3.0216 1.6333 7 6 4.1122 2.1508 1.1435 8 6 3.5735 1.4595 -0.1259 9 1 3.9543 0.4399 -0.1866 10 6 3.9886 2.2490 -1.3689 11 7 5.4403 2.1573 -1.5435 12 16 6.1298 2.5901 -2.9855 13 8 5.3878 1.8688 -3.9593 14 8 7.5176 2.3503 -2.7963 15 6 5.8048 4.3692 -3.1267 16 6 6.4008 4.8943 -4.4344 17 6 5.7608 4.1634 -5.6163 18 6 7.9111 4.6496 -4.4409 19 6 6.1314 6.3723 -4.5514 20 1 5.5880 6.8856 -3.7719 21 6 6.5774 7.0692 -5.6544 22 7 7.2065 6.4374 -6.6212 23 14 6.2885 8.9108 -5.7753 24 1 4.9899 9.1648 -6.4494 25 1 6.2616 9.4982 -4.4117 26 1 7.3842 9.5332 -6.5609 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.7996 2.7302 1.2444 33 1 1.5748 1.3789 2.1271 34 1 2.8718 3.9505 1.0658 35 1 3.0122 3.2271 2.7004 36 1 4.3784 1.4101 1.8976 37 1 4.9717 2.7762 0.9018 38 1 3.7024 3.2938 -1.2481 39 1 3.4904 1.8349 -2.2456 40 1 5.9975 1.8431 -0.8143 41 1 6.2612 4.8898 -2.2850 42 1 4.7289 4.5435 -3.1216 43 1 6.0727 4.6359 -6.5478 44 1 6.0783 3.1207 -5.6139 45 1 4.6754 4.2130 -5.5295 46 1 8.3462 5.0386 -3.5203 47 1 8.1056 3.5794 -4.5107 48 1 8.3577 5.1567 -5.2963 49 1 7.4070 5.4924 -6.5329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451747560.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:10 Heat of formation + Delta-G solvation = -123.017271 kcal Electronic energy + Delta-G solvation = -26225.629028 eV Core-core repulsion = 22698.818830 eV Total energy + Delta-G solvation = -3526.810198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12449 -38.71276 -38.17022 -36.99824 -36.00406 -33.79091 -33.51682 -30.30619 -28.53623 -28.40227 -28.01256 -26.94509 -25.77936 -23.12327 -21.48787 -21.22680 -20.55588 -20.12795 -19.17214 -18.42074 -17.45708 -17.08688 -16.44204 -16.27263 -15.72925 -15.63892 -15.38866 -15.22927 -14.93546 -14.79979 -14.50625 -14.03831 -13.89215 -13.71784 -13.59490 -13.53787 -13.21894 -13.10414 -12.89396 -12.73902 -12.71050 -12.49825 -12.36753 -12.07653 -11.99990 -11.91569 -11.81922 -11.81198 -11.75722 -11.62625 -11.48534 -11.40357 -11.30423 -11.23659 -10.54960 -10.39947 -10.21816 -8.40764 -6.29545 -0.68333 1.56699 1.64157 1.80780 1.84222 2.59812 2.77389 3.20485 3.26191 3.63594 3.68402 3.69237 3.81381 4.04794 4.16693 4.27543 4.31888 4.34910 4.43092 4.48889 4.53841 4.59464 4.61471 4.66586 4.72266 4.75187 4.79584 4.82084 4.87458 4.95760 5.01436 5.07807 5.08534 5.12946 5.14574 5.20537 5.27667 5.36815 5.39360 5.46369 5.51261 5.52321 5.60810 5.63131 6.07108 6.09594 6.25404 6.66899 7.49912 8.84837 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.003437 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.900738 B = 8144.017231 C = 8698.500759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.125 4.125 8 C -0.091 4.091 9 H 0.081 0.919 10 C 0.111 3.889 11 N -1.111 6.111 12 S 2.615 3.385 13 O -0.991 6.991 14 O -0.993 6.993 15 C -0.580 4.580 16 C 0.052 3.948 17 C -0.171 4.171 18 C -0.171 4.171 19 C -0.590 4.590 20 H 0.057 0.943 21 C -0.026 4.026 22 N -0.943 5.943 23 Si 1.112 2.888 24 H -0.277 1.277 25 H -0.270 1.270 26 H -0.289 1.289 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.423 0.577 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.058 0.942 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 -9.519 18.664 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.151 4.151 6 C -0.165 4.165 7 C -0.163 4.163 8 C -0.111 4.111 9 H 0.099 0.901 10 C -0.014 4.014 11 N -0.873 5.873 12 S 2.712 3.288 13 O -0.981 6.981 14 O -0.984 6.984 15 C -0.712 4.712 16 C 0.050 3.950 17 C -0.229 4.229 18 C -0.229 4.229 19 C -0.628 4.628 20 H 0.075 0.925 21 C -0.225 4.225 22 N -0.585 5.585 23 Si 0.935 3.065 24 H -0.203 1.203 25 H -0.195 1.195 26 H -0.215 1.215 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.259 0.741 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.341 -8.797 16.951 22.211 hybrid contribution 0.047 -0.943 1.026 1.395 sum -11.294 -9.740 17.977 23.358 Atomic orbital electron populations 1.21781 0.95359 1.01788 1.02010 1.21639 0.96337 0.95550 1.01935 1.21862 0.93276 0.96845 0.98884 0.90917 1.22418 0.97938 0.98513 0.96204 1.22524 0.94553 0.98138 1.01285 1.22492 0.98362 0.99110 0.96291 1.22030 0.96166 0.99532 0.93418 0.90089 1.21672 0.78350 1.01552 0.99857 1.55352 1.15896 1.82929 1.33090 1.04631 0.72984 0.77987 0.73216 1.93509 1.73477 1.70518 1.60618 1.93516 1.33685 1.85730 1.85428 1.30386 1.11259 1.22340 1.07235 1.18091 0.91326 0.96937 0.88610 1.22402 1.00737 0.97707 1.02085 1.22395 0.98812 0.99167 1.02506 1.22097 1.39171 0.92782 1.08796 0.92477 1.27034 0.93490 1.09852 0.92077 1.70902 1.40081 1.13485 1.33984 0.82992 0.76712 0.70298 0.76507 1.20294 1.19471 1.21483 0.92007 0.93130 0.92555 0.92695 0.91352 0.91308 0.90831 0.91842 0.90789 0.90479 0.91405 0.90493 0.91164 0.74085 0.84444 0.84594 0.92092 0.94348 0.92927 0.92749 0.94300 0.92317 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.77 71.98 0.70 -1.16 16 2 C -0.12 -1.59 5.06 30.59 0.15 -1.43 16 3 C -0.09 -1.29 2.58 -10.07 -0.03 -1.32 16 4 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 5 C -0.11 -1.38 5.54 31.67 0.18 -1.20 16 6 C -0.13 -1.66 6.91 31.88 0.22 -1.44 16 7 C -0.12 -1.77 6.12 31.67 0.19 -1.58 16 8 C -0.09 -1.49 2.68 -10.07 -0.03 -1.52 16 9 H 0.08 1.33 7.67 -2.39 -0.02 1.31 16 10 C 0.11 2.35 5.19 86.38 0.45 2.80 16 11 N -1.11 -27.41 5.60 -187.49 -1.05 -28.46 16 12 S 2.62 92.30 4.49 -56.49 -0.25 92.05 16 13 O -0.99 -40.49 15.30 -127.65 -1.95 -42.44 16 14 O -0.99 -40.34 15.89 -127.65 -2.03 -42.37 16 15 C -0.58 -21.59 4.99 71.98 0.36 -21.23 16 16 C 0.05 2.52 0.52 -52.93 -0.03 2.49 16 17 C -0.17 -8.40 7.36 71.98 0.53 -7.87 16 18 C -0.17 -8.36 7.35 71.98 0.53 -7.83 16 19 C -0.59 -31.09 8.01 25.60 0.21 -30.88 16 20 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 21 C -0.03 -1.40 5.09 84.66 0.43 -0.97 16 22 N -0.94 -55.34 12.09 21.45 0.26 -55.08 16 23 Si 1.11 48.52 29.90 68.60 2.05 50.57 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 27 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.84 8.01 -2.38 -0.02 0.82 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.80 7.76 -2.39 -0.02 0.78 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.02 7.17 -2.39 -0.02 1.00 16 38 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.63 7.69 -2.39 -0.02 1.62 16 40 H 0.42 8.69 7.96 -96.75 -0.77 7.92 16 41 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 42 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 43 H 0.06 3.27 5.17 -2.38 -0.01 3.26 16 44 H 0.04 1.79 6.03 -2.39 -0.01 1.77 16 45 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 46 H 0.05 2.50 8.13 -2.39 -0.02 2.48 16 47 H 0.04 1.81 6.05 -2.39 -0.01 1.79 16 48 H 0.06 3.12 5.28 -2.38 -0.01 3.11 16 49 H 0.28 16.09 3.61 -92.71 -0.33 15.76 16 Total: -1.00 -68.69 374.75 1.47 -67.21 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.58 Total: 31.67 kcal Atomic # 6 Polarization: -77.02 SS G_CDS: 3.87 Total: -73.15 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -0.79 Total: -83.53 kcal Atomic # 8 Polarization: -80.83 SS G_CDS: -3.98 Total: -84.81 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.05 Total: 50.57 kcal Atomic # 16 Polarization: 92.30 SS G_CDS: -0.25 Total: 92.05 kcal Total: -68.69 1.47 -67.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451747560.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.803 kcal (2) G-P(sol) polarization free energy of solvation -68.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds