Wall clock time and date at job start Fri Apr 10 2020 23:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47402 * 241.80891 * 3 2 1 5 5 C 1.52997 * 109.47386 * 1.80950 * 3 2 1 6 6 C 1.53008 * 109.47107 * 185.00094 * 5 3 2 7 7 N 1.46900 * 109.47241 * 121.81012 * 3 2 1 8 8 C 1.46900 * 111.00044 * 84.99790 * 7 3 2 9 9 C 1.50705 * 109.47370 * 180.02562 * 8 7 3 10 10 C 1.38245 * 119.92641 * 89.99479 * 9 8 7 11 11 C 1.38247 * 120.14478 * 180.02562 * 10 9 8 12 12 C 1.38558 * 119.99917 * 359.97438 * 11 10 9 13 13 O 1.35995 * 120.07405 * 179.97438 * 12 11 10 14 14 C 1.42895 * 117.00064 * 0.02562 * 13 12 11 15 15 C 1.39155 * 119.85524 * 359.97438 * 12 11 10 16 16 O 1.35994 * 120.07385 * 179.72156 * 15 12 11 17 17 C 1.42907 * 117.00165 * 180.02562 * 16 15 12 18 18 C 1.52990 * 109.47331 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47409 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99605 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99788 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00150 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46925 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47098 * 120.00179 * 23 21 19 26 26 H 1.48497 * 109.47108 * 240.00085 * 23 21 19 27 27 C 1.38238 * 119.92041 * 270.00012 * 9 8 7 28 28 H 4.18738 * 15.03945 * 0.02562 * 4 2 1 29 29 H 1.08997 * 109.47031 * 304.99876 * 5 3 2 30 30 H 1.08994 * 109.47298 * 64.99937 * 5 3 2 31 31 H 1.09005 * 109.46649 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46997 * 299.99802 * 6 5 3 33 33 H 1.08994 * 109.47170 * 59.99764 * 6 5 3 34 34 H 1.00895 * 111.00423 * 208.95290 * 7 3 2 35 35 H 1.09000 * 109.47589 * 60.00025 * 8 7 3 36 36 H 1.09008 * 109.47364 * 300.00150 * 8 7 3 37 37 H 1.08002 * 119.92791 * 0.02921 * 10 9 8 38 38 H 1.07996 * 120.00046 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47498 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.47268 * 300.00538 * 14 13 12 41 41 H 1.09005 * 109.46932 * 60.00506 * 14 13 12 42 42 H 1.08998 * 109.46932 * 300.00387 * 17 16 15 43 43 H 1.09002 * 109.46940 * 59.99906 * 17 16 15 44 44 H 1.08998 * 109.47334 * 300.00026 * 18 17 16 45 45 H 1.09002 * 109.47280 * 59.99999 * 18 17 16 46 46 H 0.97001 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.07998 * 120.00548 * 359.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4863 0.9058 5 6 3.1566 -1.4408 -0.0455 6 6 4.6816 -1.4459 0.0801 7 7 3.1353 0.7309 -1.1770 8 6 3.1974 2.1746 -0.9125 9 6 3.7020 2.8889 -2.1398 10 6 2.8074 3.3361 -3.0942 11 6 3.2654 3.9915 -4.2220 12 6 4.6236 4.2018 -4.3975 13 8 5.0758 4.8459 -5.5066 14 6 4.0944 5.2794 -6.4504 15 6 5.5240 3.7526 -3.4363 16 8 6.8585 3.9517 -3.6067 17 6 7.7237 3.4633 -2.5795 18 6 9.1760 3.7777 -2.9437 19 6 10.0885 3.2621 -1.8608 20 1 9.6739 2.7600 -0.9992 21 6 11.4524 3.4305 -1.9706 22 7 11.9572 4.0416 -3.0201 23 14 12.5834 2.7920 -0.6279 24 1 11.7731 2.1497 0.4378 25 1 13.5229 1.7967 -1.2040 26 1 13.3533 3.9227 -0.0500 27 6 5.0584 3.0954 -2.3086 28 1 -1.0500 -0.0006 -0.0002 29 1 2.7223 -2.0064 0.7788 30 1 2.8685 -1.8987 -0.9918 31 1 5.0454 -2.4729 0.0472 32 1 5.1159 -0.8804 -0.7443 33 1 4.9697 -0.9881 1.0263 34 1 4.0331 0.3787 -1.4736 35 1 3.8737 2.3625 -0.0785 36 1 2.2018 2.5414 -0.6626 37 1 1.7484 3.1732 -2.9584 38 1 2.5645 4.3395 -4.9663 39 1 4.5880 5.7766 -7.2855 40 1 3.5386 4.4171 -6.8186 41 1 3.4081 5.9749 -5.9674 42 1 7.4739 3.9455 -1.6344 43 1 7.5986 2.3849 -2.4814 44 1 9.4260 3.2959 -3.8889 45 1 9.3007 4.8562 -3.0415 46 1 12.9168 4.1603 -3.0971 47 1 5.7552 2.7453 -1.5614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491381404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:20 Heat of formation + Delta-G solvation = -7.315950 kcal Electronic energy + Delta-G solvation = -25742.174245 eV Core-core repulsion = 22084.937282 eV Total energy + Delta-G solvation = -3657.236963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33412 -38.34701 -38.04084 -36.68826 -33.46764 -33.12345 -32.43074 -30.66966 -30.17032 -29.26163 -27.56796 -26.47359 -25.11314 -24.25210 -22.40642 -21.88975 -21.16665 -20.46558 -18.29771 -18.23574 -17.03191 -16.50500 -16.14846 -15.95232 -15.76479 -15.60216 -14.97913 -14.93821 -14.59136 -14.47176 -14.02384 -13.91092 -13.62737 -13.41729 -12.87477 -12.59722 -12.34607 -12.31692 -12.08307 -11.85490 -11.81861 -11.48979 -11.41428 -11.20298 -11.04113 -10.95132 -10.85908 -10.76093 -10.58464 -10.49856 -10.27573 -9.82354 -9.64396 -9.26693 -8.78466 -8.50026 -8.43651 -7.47783 -6.08920 -4.13543 1.39793 1.61567 2.61973 2.67721 3.26666 3.33605 3.36890 3.43607 3.77367 3.82640 4.07997 4.32398 4.41304 4.67774 4.77085 4.81206 4.88403 4.98914 5.04563 5.18689 5.19809 5.25389 5.27435 5.27619 5.43354 5.44074 5.50913 5.59371 5.62073 5.69664 5.79351 5.82742 5.85594 6.01388 6.04983 6.05357 6.30195 6.36729 6.62968 6.72674 6.73670 6.86520 7.13997 7.34568 7.48437 7.57979 7.67890 7.85393 8.12457 8.25843 8.92373 9.50582 11.02712 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.003563 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.444660 B = 7856.237384 C =10897.820106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.192 3.808 4 H 0.068 0.932 5 C -0.121 4.121 6 C -0.160 4.160 7 N -0.678 5.678 8 C 0.104 3.896 9 C -0.084 4.084 10 C -0.106 4.106 11 C -0.176 4.176 12 C 0.091 3.909 13 O -0.303 6.303 14 C 0.028 3.972 15 C 0.119 3.881 16 O -0.304 6.304 17 C 0.065 3.935 18 C 0.026 3.974 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 C -0.172 4.172 28 H 0.215 0.785 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.353 0.647 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.675 -5.624 2.430 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.166 4.166 3 C 0.083 3.917 4 H 0.085 0.915 5 C -0.159 4.159 6 C -0.218 4.218 7 N -0.313 5.313 8 C -0.024 4.024 9 C -0.085 4.085 10 C -0.125 4.125 11 C -0.195 4.195 12 C 0.046 3.954 13 O -0.216 6.216 14 C -0.067 4.067 15 C 0.072 3.928 16 O -0.218 6.218 17 C -0.009 4.009 18 C -0.011 4.011 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.191 4.191 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.759 -5.399 1.843 23.464 hybrid contribution 0.914 -0.299 1.313 1.627 sum -21.845 -5.698 3.155 22.796 Atomic orbital electron populations 1.24840 0.95810 1.00929 1.01039 1.22933 0.94016 0.99989 0.99651 1.18459 0.85062 0.95176 0.93013 0.91487 1.21664 0.96270 0.94498 1.03451 1.21875 0.94894 1.02735 1.02251 1.60415 1.34503 1.02756 1.33594 1.20861 1.00744 0.86933 0.93848 1.19303 0.92372 1.00099 0.96702 1.20543 0.99219 0.99276 0.93463 1.20958 0.93003 1.05013 1.00491 1.18349 0.91120 0.98009 0.87951 1.86241 1.34787 1.71162 1.29433 1.23015 0.92788 0.99069 0.91867 1.18392 0.84588 0.97008 0.92802 1.86288 1.11986 1.75744 1.47736 1.23313 0.91879 0.97186 0.88505 1.19111 0.85581 0.98441 0.98015 1.21002 0.91254 1.38270 1.05781 0.92381 1.24992 0.98220 0.95111 0.95893 1.69996 1.12515 1.41878 1.28294 0.86447 0.80670 0.78649 0.81706 1.19670 1.20841 1.20858 1.21023 0.96027 1.03859 0.98233 0.76830 0.90892 0.90525 0.91744 0.92104 0.92356 0.82463 0.94001 0.90264 0.86062 0.85235 0.88425 0.93018 0.93045 0.93332 0.93318 0.95364 0.95379 0.92777 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.17 -1.74 12.62 -37.13 -0.47 -2.20 16 3 C 0.19 1.84 2.50 -70.50 -0.18 1.66 16 4 H 0.07 0.61 7.80 -51.93 -0.40 0.21 16 5 C -0.12 -1.00 5.48 -26.73 -0.15 -1.14 16 6 C -0.16 -1.28 9.74 37.16 0.36 -0.92 16 7 N -0.68 -7.29 6.26 -110.98 -0.70 -7.98 16 8 C 0.10 1.16 5.60 -4.97 -0.03 1.13 16 9 C -0.08 -1.11 5.39 -104.62 -0.56 -1.68 16 10 C -0.11 -1.35 9.69 -39.58 -0.38 -1.73 16 11 C -0.18 -2.33 9.04 -39.46 -0.36 -2.68 16 12 C 0.09 1.51 6.70 -39.12 -0.26 1.25 16 13 O -0.30 -5.04 10.28 -34.23 -0.35 -5.39 16 14 C 0.03 0.30 9.81 101.05 0.99 1.29 16 15 C 0.12 2.18 6.70 -39.12 -0.26 1.92 16 16 O -0.30 -6.61 9.92 -34.22 -0.34 -6.95 16 17 C 0.07 1.42 4.68 37.15 0.17 1.59 16 18 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 23 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C -0.17 -2.67 8.69 -39.46 -0.34 -3.02 16 28 H 0.21 1.24 7.80 -54.09 -0.42 0.82 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.35 3.76 6.46 -39.29 -0.25 3.50 16 35 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 36 H 0.08 0.85 7.92 -51.92 -0.41 0.44 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 41 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 42 H 0.05 1.00 7.67 -51.93 -0.40 0.60 16 43 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -32.50 395.17 -8.59 -41.09 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.42 Total: 1.63 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.45 Total: -18.70 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.04 Total: -33.87 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.69 Total: -12.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.50 -8.59 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491381404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.774 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds