Wall clock time and date at job start Fri Apr 10 2020 23:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47402 * 241.80891 * 3 2 1 5 5 C 1.52997 * 109.47386 * 1.80950 * 3 2 1 6 6 C 1.53008 * 109.47107 * 185.00094 * 5 3 2 7 7 N 1.46900 * 109.47241 * 121.81012 * 3 2 1 8 8 C 1.46900 * 111.00044 * 84.99790 * 7 3 2 9 9 C 1.50705 * 109.47370 * 180.02562 * 8 7 3 10 10 C 1.38245 * 119.92641 * 89.99479 * 9 8 7 11 11 C 1.38247 * 120.14478 * 180.02562 * 10 9 8 12 12 C 1.38558 * 119.99917 * 359.97438 * 11 10 9 13 13 O 1.35995 * 120.07405 * 179.97438 * 12 11 10 14 14 C 1.42895 * 117.00064 * 0.02562 * 13 12 11 15 15 C 1.39155 * 119.85524 * 359.97438 * 12 11 10 16 16 O 1.35994 * 120.07385 * 179.72156 * 15 12 11 17 17 C 1.42907 * 117.00165 * 180.02562 * 16 15 12 18 18 C 1.52990 * 109.47331 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47409 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99605 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31520 * 119.99788 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00150 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46925 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47098 * 120.00179 * 23 21 19 26 26 H 1.48497 * 109.47108 * 240.00085 * 23 21 19 27 27 C 1.38238 * 119.92041 * 270.00012 * 9 8 7 28 28 H 4.18738 * 15.03945 * 0.02562 * 4 2 1 29 29 H 1.08997 * 109.47031 * 304.99876 * 5 3 2 30 30 H 1.08994 * 109.47298 * 64.99937 * 5 3 2 31 31 H 1.09005 * 109.46649 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46997 * 299.99802 * 6 5 3 33 33 H 1.08994 * 109.47170 * 59.99764 * 6 5 3 34 34 H 1.00895 * 111.00423 * 208.95290 * 7 3 2 35 35 H 1.09000 * 109.47589 * 60.00025 * 8 7 3 36 36 H 1.09008 * 109.47364 * 300.00150 * 8 7 3 37 37 H 1.08002 * 119.92791 * 0.02921 * 10 9 8 38 38 H 1.07996 * 120.00046 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47498 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.47268 * 300.00538 * 14 13 12 41 41 H 1.09005 * 109.46932 * 60.00506 * 14 13 12 42 42 H 1.08998 * 109.46932 * 300.00387 * 17 16 15 43 43 H 1.09002 * 109.46940 * 59.99906 * 17 16 15 44 44 H 1.08998 * 109.47334 * 300.00026 * 18 17 16 45 45 H 1.09002 * 109.47280 * 59.99999 * 18 17 16 46 46 H 0.97001 * 119.99409 * 179.97438 * 22 21 19 47 47 H 1.07998 * 120.00548 * 359.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4863 0.9058 5 6 3.1566 -1.4408 -0.0455 6 6 4.6816 -1.4459 0.0801 7 7 3.1353 0.7309 -1.1770 8 6 3.1974 2.1746 -0.9125 9 6 3.7020 2.8889 -2.1398 10 6 2.8074 3.3361 -3.0942 11 6 3.2654 3.9915 -4.2220 12 6 4.6236 4.2018 -4.3975 13 8 5.0758 4.8459 -5.5066 14 6 4.0944 5.2794 -6.4504 15 6 5.5240 3.7526 -3.4363 16 8 6.8585 3.9517 -3.6067 17 6 7.7237 3.4633 -2.5795 18 6 9.1760 3.7777 -2.9437 19 6 10.0885 3.2621 -1.8608 20 1 9.6739 2.7600 -0.9992 21 6 11.4524 3.4305 -1.9706 22 7 11.9572 4.0416 -3.0201 23 14 12.5834 2.7920 -0.6279 24 1 11.7731 2.1497 0.4378 25 1 13.5229 1.7967 -1.2040 26 1 13.3533 3.9227 -0.0500 27 6 5.0584 3.0954 -2.3086 28 1 -1.0500 -0.0006 -0.0002 29 1 2.7223 -2.0064 0.7788 30 1 2.8685 -1.8987 -0.9918 31 1 5.0454 -2.4729 0.0472 32 1 5.1159 -0.8804 -0.7443 33 1 4.9697 -0.9881 1.0263 34 1 4.0331 0.3787 -1.4736 35 1 3.8737 2.3625 -0.0785 36 1 2.2018 2.5414 -0.6626 37 1 1.7484 3.1732 -2.9584 38 1 2.5645 4.3395 -4.9663 39 1 4.5880 5.7766 -7.2855 40 1 3.5386 4.4171 -6.8186 41 1 3.4081 5.9749 -5.9674 42 1 7.4739 3.9455 -1.6344 43 1 7.5986 2.3849 -2.4814 44 1 9.4260 3.2959 -3.8889 45 1 9.3007 4.8562 -3.0415 46 1 12.9168 4.1603 -3.0971 47 1 5.7552 2.7453 -1.5614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491381404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:19 Heat of formation + Delta-G solvation = -26.564355 kcal Electronic energy + Delta-G solvation = -25743.008918 eV Core-core repulsion = 22084.937282 eV Total energy + Delta-G solvation = -3658.071637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.53849 -39.47688 -39.14477 -37.75911 -35.48325 -34.09033 -33.11104 -32.45486 -31.21299 -30.63032 -28.46510 -27.31997 -26.97390 -25.20652 -23.94434 -22.66870 -22.41639 -21.89711 -19.53053 -18.94014 -18.63321 -17.81161 -17.59209 -17.15752 -16.76600 -16.55335 -16.51657 -16.33672 -15.79395 -15.60268 -15.10770 -14.84019 -14.41003 -14.38627 -14.30152 -14.15232 -13.94515 -13.34841 -13.07198 -13.05063 -12.86195 -12.69309 -12.66913 -12.55604 -12.41584 -12.12664 -11.99539 -11.90592 -11.83437 -11.59715 -11.57869 -11.38210 -11.27651 -10.97782 -10.62807 -9.72791 -9.50776 -8.72645 -8.26207 -6.40236 0.28122 0.44738 1.40897 1.42266 1.55611 1.88974 1.97105 2.27188 2.42169 2.51461 2.68979 3.08191 3.35856 3.53827 3.81738 3.83931 4.01394 4.06820 4.12405 4.14501 4.26928 4.28464 4.34299 4.38495 4.42411 4.44526 4.54241 4.59879 4.64485 4.73482 4.74557 4.78569 4.86171 5.07375 5.13657 5.18056 5.20415 5.27789 5.32805 5.37999 5.46752 5.59615 5.68221 5.78030 5.94397 6.05690 6.24576 6.32168 6.71591 6.75475 6.79034 7.30029 8.87437 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.003563 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.444660 B = 7856.237384 C =10897.820106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.203 4.203 3 C 0.192 3.808 4 H 0.071 0.929 5 C -0.114 4.114 6 C -0.159 4.159 7 N -0.683 5.683 8 C 0.110 3.890 9 C -0.082 4.082 10 C -0.096 4.096 11 C -0.166 4.166 12 C 0.076 3.924 13 O -0.341 6.341 14 C 0.018 3.982 15 C 0.072 3.928 16 O -0.336 6.336 17 C 0.085 3.915 18 C 0.030 3.970 19 C -0.543 4.543 20 H 0.073 0.927 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.977 3.023 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.278 1.278 27 C -0.171 4.171 28 H 0.243 0.757 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.351 0.649 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.060 0.940 44 H -0.005 1.005 45 H -0.005 1.005 46 H 0.266 0.734 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.173 -6.704 3.945 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.204 4.204 3 C 0.083 3.917 4 H 0.089 0.911 5 C -0.152 4.152 6 C -0.217 4.217 7 N -0.318 5.318 8 C -0.018 4.018 9 C -0.083 4.083 10 C -0.114 4.114 11 C -0.184 4.184 12 C 0.030 3.970 13 O -0.256 6.256 14 C -0.076 4.076 15 C 0.027 3.973 16 O -0.251 6.251 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.580 4.580 20 H 0.091 0.909 21 C -0.198 4.198 22 N -0.572 5.572 23 Si 0.801 3.199 24 H -0.179 1.179 25 H -0.202 1.202 26 H -0.203 1.203 27 C -0.190 4.190 28 H 0.259 0.741 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.075 0.925 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.298 -6.484 3.357 26.330 hybrid contribution 1.492 0.064 0.753 1.673 sum -23.805 -6.420 4.109 24.996 Atomic orbital electron populations 1.25628 0.96688 0.99580 0.99619 1.23303 0.94735 1.01318 1.01006 1.18494 0.85046 0.95590 0.92564 0.91146 1.21608 0.96266 0.93903 1.03429 1.21867 0.94789 1.02997 1.01997 1.60410 1.34438 1.02523 1.34424 1.20822 1.01113 0.87112 0.92787 1.19548 0.91425 0.99655 0.97630 1.20953 1.00514 0.97450 0.92531 1.21306 0.91941 1.03926 1.01243 1.18641 0.92089 0.98364 0.87871 1.86186 1.37632 1.71484 1.30273 1.23345 0.92616 1.00255 0.91367 1.18830 0.83152 1.00165 0.95192 1.86187 1.14119 1.76922 1.47855 1.22844 0.89370 0.97857 0.88840 1.18943 0.89315 0.95841 0.96660 1.21416 0.91955 1.38350 1.06320 0.90929 1.26075 1.00155 0.95082 0.98523 1.70147 1.13153 1.43211 1.30679 0.85218 0.78147 0.78086 0.78493 1.17886 1.20228 1.20312 1.21087 0.97228 1.03353 0.97334 0.74077 0.90003 0.91178 0.91153 0.92950 0.92122 0.82658 0.93641 0.89380 0.83208 0.81974 0.87182 0.91267 0.91171 0.92329 0.92148 0.98628 0.98691 0.92471 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 19.25 74.32 1.43 -1.68 16 2 C -0.20 -3.84 12.62 31.12 0.39 -3.45 16 3 C 0.19 3.37 2.50 43.11 0.11 3.48 16 4 H 0.07 1.17 7.80 -2.38 -0.02 1.15 16 5 C -0.11 -1.73 5.48 30.60 0.17 -1.56 16 6 C -0.16 -2.38 9.74 71.98 0.70 -1.67 16 7 N -0.68 -13.60 6.26 -505.02 -3.16 -16.77 16 8 C 0.11 2.23 5.60 85.56 0.48 2.71 16 9 C -0.08 -2.04 5.39 -19.86 -0.11 -2.14 16 10 C -0.10 -2.16 9.69 22.27 0.22 -1.95 16 11 C -0.17 -4.01 9.04 22.35 0.20 -3.81 16 12 C 0.08 2.51 6.70 22.57 0.15 2.66 16 13 O -0.34 -11.54 10.28 -79.63 -0.82 -12.35 16 14 C 0.02 0.37 9.81 113.37 1.11 1.48 16 15 C 0.07 2.71 6.70 22.57 0.15 2.87 16 16 O -0.34 -15.45 9.92 -79.62 -0.79 -16.24 16 17 C 0.09 3.88 4.68 71.98 0.34 4.21 16 18 C 0.03 1.67 5.34 29.85 0.16 1.83 16 19 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 20 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 23 Si 0.98 43.72 29.54 68.60 2.03 45.75 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.17 -5.30 8.69 22.35 0.19 -5.10 16 28 H 0.24 1.96 7.80 -4.42 -0.03 1.93 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.05 0.87 6.43 -2.39 -0.02 0.85 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.35 7.15 6.46 -89.70 -0.58 6.57 16 35 H 0.05 0.89 8.00 -2.39 -0.02 0.88 16 36 H 0.09 1.65 7.92 -2.38 -0.02 1.63 16 37 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.16 2.77 6.30 -2.91 -0.02 2.75 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 41 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 42 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 43 H 0.06 2.54 7.65 -2.39 -0.02 2.53 16 44 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 47 H 0.13 4.02 6.30 -2.91 -0.02 4.00 16 Total: -1.00 -73.37 395.17 4.30 -69.07 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.37 Total: 20.38 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 6.39 Total: -32.43 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.88 Total: -74.18 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.61 Total: -28.59 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.37 4.30 -69.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491381404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.509 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds