Wall clock time and date at job start Fri Apr 10 2020 23:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47140 * 2 1 4 4 C 1.35735 * 116.99785 * 179.97438 * 3 2 1 5 5 C 1.39038 * 119.88769 * 0.03144 * 4 3 2 6 6 C 1.37649 * 120.11845 * 179.71563 * 5 4 3 7 7 C 1.39993 * 119.87642 * 0.53205 * 6 5 4 8 8 C 1.47005 * 120.10843 * 179.74354 * 7 6 5 9 9 C 1.34975 * 120.00029 * 225.88861 * 8 7 6 10 10 C 1.46260 * 119.99975 * 11.08469 * 9 8 7 11 11 O 1.21719 * 120.00082 * 7.03249 * 10 9 8 12 12 N 1.34773 * 120.00023 * 187.03981 * 10 9 8 13 13 C 1.46501 * 119.99829 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47313 * 324.99695 * 13 12 10 15 15 C 1.50702 * 109.47001 * 204.99447 * 13 12 10 16 16 H 1.08001 * 120.00257 * 359.97438 * 15 13 12 17 17 C 1.37880 * 119.99960 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99689 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00121 * 0.02562 * 17 15 13 20 20 H 1.48493 * 109.47321 * 89.99780 * 19 17 15 21 21 H 1.48502 * 109.47104 * 210.00283 * 19 17 15 22 22 H 1.48505 * 109.46898 * 329.99320 * 19 17 15 23 23 C 1.53006 * 109.46973 * 84.99782 * 13 12 10 24 24 C 1.52987 * 109.47048 * 294.99451 * 23 13 12 25 25 C 1.39953 * 119.77797 * 359.46850 * 7 6 5 26 26 C 1.37675 * 119.88423 * 0.25164 * 25 7 6 27 27 C 1.50702 * 119.94365 * 180.02562 * 26 25 7 28 28 H 1.08999 * 109.47643 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47313 * 299.99914 * 1 2 3 30 30 H 1.09001 * 109.47337 * 59.99182 * 1 2 3 31 31 H 1.09005 * 109.46641 * 240.00323 * 2 1 3 32 32 H 1.08992 * 109.46979 * 120.00322 * 2 1 3 33 33 H 1.07998 * 119.94415 * 359.97438 * 5 4 3 34 34 H 1.07995 * 120.05931 * 180.24775 * 6 5 4 35 35 H 1.08002 * 119.99793 * 46.16883 * 8 7 6 36 36 H 1.08000 * 120.00448 * 191.08305 * 9 8 7 37 37 H 0.96997 * 120.00316 * 359.97438 * 12 10 9 38 38 H 0.97001 * 119.99851 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47096 * 55.00324 * 23 13 12 40 40 H 1.09005 * 109.46759 * 174.99462 * 23 13 12 41 41 H 1.08996 * 109.47885 * 300.00390 * 24 23 13 42 42 H 1.09005 * 109.47332 * 60.00362 * 24 23 13 43 43 H 1.09006 * 109.47522 * 179.97438 * 24 23 13 44 44 H 1.08000 * 120.05542 * 180.23039 * 25 7 6 45 45 H 1.08994 * 109.46966 * 90.00072 * 27 26 25 46 46 H 1.09009 * 109.47043 * 210.00129 * 27 26 25 47 47 H 1.08997 * 109.47273 * 329.99719 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.1968 0.4207 0.0004 6 6 5.5621 0.5955 -0.0050 7 6 6.0997 1.8881 0.0010 8 6 7.5571 2.0807 0.0010 9 6 8.1201 2.9716 0.8443 10 6 7.3246 3.5658 1.9181 11 8 6.1955 3.1648 2.1325 12 7 7.8416 4.5575 2.6702 13 6 7.0446 5.1531 3.7455 14 1 5.9965 5.1815 3.4479 15 6 7.5291 6.5548 4.0127 16 1 8.3491 6.9613 3.4392 17 6 6.9256 7.3184 4.9893 18 7 7.3482 8.5419 5.2220 19 14 5.5079 6.6153 5.9817 20 1 6.0389 5.9358 7.1905 21 1 4.5973 7.7145 6.3914 22 1 4.7602 5.6367 5.1518 23 6 7.1916 4.3120 5.0152 24 6 6.5857 2.9266 4.7821 25 6 5.2450 2.9964 0.0011 26 6 3.8808 2.8106 0.0006 27 6 2.9593 4.0030 0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7810 -0.5760 0.0003 34 1 6.2173 -0.2629 -0.0091 35 1 8.1768 1.5125 -0.6769 36 1 9.1580 3.2457 0.7261 37 1 8.7415 4.8769 2.4996 38 1 6.9239 9.0791 5.9093 39 1 8.2480 4.2097 5.2629 40 1 6.6713 4.8023 5.8380 41 1 5.5292 3.0289 4.5344 42 1 7.1060 2.4363 3.9592 43 1 6.6908 2.3272 5.6865 44 1 5.6549 3.9955 0.0019 45 1 2.7375 4.2903 -1.0276 46 1 2.0327 3.7463 0.5137 47 1 3.4410 4.8347 0.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492592081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:37 Heat of formation + Delta-G solvation = -31.350695 kcal Electronic energy + Delta-G solvation = -27111.356537 eV Core-core repulsion = 23453.077348 eV Total energy + Delta-G solvation = -3658.279188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22292 -39.26012 -37.49849 -35.36685 -33.61779 -32.38198 -32.25211 -31.64668 -31.35256 -28.76599 -27.40497 -26.59774 -24.35323 -23.46699 -22.46813 -21.33715 -21.06782 -19.77210 -19.07071 -18.05082 -17.17910 -16.24273 -16.15941 -15.90814 -15.63220 -14.91291 -14.62029 -14.13063 -13.94354 -13.80242 -13.59840 -13.41445 -13.09088 -12.92256 -12.77159 -12.69658 -12.62274 -12.29924 -12.04971 -11.86023 -11.74358 -11.71851 -11.60215 -11.18082 -11.04026 -10.85801 -10.80351 -10.62698 -10.58492 -9.90219 -9.52528 -9.41082 -9.19542 -9.08725 -8.73542 -8.39104 -7.88232 -7.50627 -6.19325 -4.21339 1.04268 1.65336 2.11359 3.21514 3.25181 3.37040 3.42952 3.92048 4.01810 4.15188 4.33615 4.73314 4.75894 4.92274 4.93423 5.01820 5.06355 5.14750 5.26196 5.33219 5.47493 5.53297 5.57685 5.67091 5.77584 5.82214 5.85117 5.92399 6.01894 6.07197 6.10994 6.20731 6.24720 6.33842 6.47554 6.54620 6.67493 6.71061 6.75465 6.86151 6.90897 7.00723 7.03083 7.33490 7.36668 7.54208 7.56771 8.21347 8.59949 8.79280 9.05636 9.42444 10.92814 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003915 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.310326 B = 7149.862226 C = 8131.449777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.314 6.314 4 C 0.134 3.866 5 C -0.220 4.220 6 C -0.071 4.071 7 C -0.092 4.092 8 C -0.038 4.038 9 C -0.202 4.202 10 C 0.523 3.477 11 O -0.535 6.535 12 N -0.696 5.696 13 C 0.244 3.756 14 H 0.049 0.951 15 C -0.534 4.534 16 H 0.079 0.921 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.260 1.260 23 C -0.138 4.138 24 C -0.141 4.141 25 C 0.002 3.998 26 C -0.123 4.123 27 C -0.102 4.102 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.393 0.607 38 H 0.267 0.733 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.122 0.878 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 -17.077 -12.559 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.228 6.228 4 C 0.089 3.911 5 C -0.239 4.239 6 C -0.089 4.089 7 C -0.092 4.092 8 C -0.058 4.058 9 C -0.223 4.223 10 C 0.311 3.689 11 O -0.415 6.415 12 N -0.343 5.343 13 C 0.140 3.860 14 H 0.067 0.933 15 C -0.572 4.572 16 H 0.097 0.903 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.712 3.288 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.184 1.184 23 C -0.176 4.176 24 C -0.199 4.199 25 C -0.017 4.017 26 C -0.124 4.124 27 C -0.158 4.158 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.227 0.773 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.140 0.860 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.601 -17.006 -12.258 21.978 hybrid contribution 0.086 -0.376 0.816 0.903 sum -6.514 -17.382 -11.442 21.806 Atomic orbital electron populations 1.21767 0.93009 1.02586 1.03504 1.22719 0.95622 0.82511 1.01180 1.86006 1.19548 1.28647 1.88629 1.18876 0.81753 0.93656 0.96834 1.20891 0.94243 0.97289 1.11462 1.20824 0.94077 0.95899 0.98090 1.18680 0.92580 0.93088 1.04875 1.22183 0.93107 0.94575 0.95915 1.23221 1.00794 1.00766 0.97557 1.18342 0.87037 0.80619 0.82938 1.90866 1.18632 1.61653 1.70391 1.46173 1.18654 1.35279 1.34173 1.19107 0.92899 0.91518 0.82465 0.93316 1.21072 1.19754 0.95750 1.20614 0.90262 1.24832 0.96605 0.94605 0.96468 1.69872 1.41610 1.08807 1.32730 0.86909 0.82655 0.78258 0.80945 1.20332 1.22231 1.18421 1.22274 1.00240 0.95286 0.99803 1.21855 1.01485 0.97163 0.99368 1.20812 0.91132 0.98005 0.91719 1.19032 0.94119 0.92273 1.06965 1.20558 0.98511 0.95255 1.01512 0.90616 0.91509 0.91618 0.92312 0.92221 0.86157 0.86353 0.85408 0.85481 0.77335 0.92335 0.92471 0.92963 0.92930 0.92780 0.95295 0.86050 0.92039 0.91569 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.54 5.45 37.16 0.20 0.74 16 3 O -0.31 -4.33 9.16 -18.91 -0.17 -4.51 16 4 C 0.13 2.02 6.67 -39.00 -0.26 1.76 16 5 C -0.22 -2.96 9.01 -39.50 -0.36 -3.32 16 6 C -0.07 -0.95 9.79 -39.14 -0.38 -1.33 16 7 C -0.09 -1.36 4.43 -105.05 -0.46 -1.82 16 8 C -0.04 -0.48 9.79 -37.19 -0.36 -0.84 16 9 C -0.20 -2.79 9.91 -37.52 -0.37 -3.16 16 10 C 0.52 9.51 5.43 -13.04 -0.07 9.44 16 11 O -0.54 -11.09 9.48 5.17 0.05 -11.04 16 12 N -0.70 -13.56 5.02 -56.38 -0.28 -13.84 16 13 C 0.24 5.74 1.83 -69.08 -0.13 5.61 16 14 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 15 C -0.53 -14.40 9.31 -34.44 -0.32 -14.72 16 16 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 17 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 18 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 19 Si 0.88 22.02 24.41 -169.99 -4.15 17.87 16 20 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 23 C -0.14 -3.09 5.11 -26.73 -0.14 -3.23 16 24 C -0.14 -2.92 8.51 37.15 0.32 -2.61 16 25 C 0.00 0.03 6.34 -39.14 -0.25 -0.22 16 26 C -0.12 -1.99 5.89 -104.54 -0.62 -2.61 16 27 C -0.10 -1.51 9.78 36.01 0.35 -1.16 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 32 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 33 H 0.12 1.31 6.27 -52.49 -0.33 0.98 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.39 6.83 8.52 -40.82 -0.35 6.48 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.24 3.22 -51.93 -0.17 1.08 16 41 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 42 H 0.05 1.10 5.64 -51.93 -0.29 0.80 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 2.06 7.26 -52.49 -0.38 1.67 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.97 7.52 -51.92 -0.39 0.58 16 47 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -32.00 371.07 -8.03 -40.03 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.28 Total: 7.82 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.56 Total: -16.13 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.49 Total: -39.64 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.12 Total: -15.55 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.00 -8.03 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492592081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.681 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds