Wall clock time and date at job start Fri Apr 10 2020 23:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47140 * 2 1 4 4 C 1.35735 * 116.99785 * 179.97438 * 3 2 1 5 5 C 1.39038 * 119.88769 * 0.03144 * 4 3 2 6 6 C 1.37649 * 120.11845 * 179.71563 * 5 4 3 7 7 C 1.39993 * 119.87642 * 0.53205 * 6 5 4 8 8 C 1.47005 * 120.10843 * 179.74354 * 7 6 5 9 9 C 1.34975 * 120.00029 * 225.88861 * 8 7 6 10 10 C 1.46260 * 119.99975 * 11.08469 * 9 8 7 11 11 O 1.21719 * 120.00082 * 7.03249 * 10 9 8 12 12 N 1.34773 * 120.00023 * 187.03981 * 10 9 8 13 13 C 1.46501 * 119.99829 * 179.97438 * 12 10 9 14 14 H 1.08990 * 109.47313 * 324.99695 * 13 12 10 15 15 C 1.50702 * 109.47001 * 204.99447 * 13 12 10 16 16 H 1.08001 * 120.00257 * 359.97438 * 15 13 12 17 17 C 1.37880 * 119.99960 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99689 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00121 * 0.02562 * 17 15 13 20 20 H 1.48493 * 109.47321 * 89.99780 * 19 17 15 21 21 H 1.48502 * 109.47104 * 210.00283 * 19 17 15 22 22 H 1.48505 * 109.46898 * 329.99320 * 19 17 15 23 23 C 1.53006 * 109.46973 * 84.99782 * 13 12 10 24 24 C 1.52987 * 109.47048 * 294.99451 * 23 13 12 25 25 C 1.39953 * 119.77797 * 359.46850 * 7 6 5 26 26 C 1.37675 * 119.88423 * 0.25164 * 25 7 6 27 27 C 1.50702 * 119.94365 * 180.02562 * 26 25 7 28 28 H 1.08999 * 109.47643 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47313 * 299.99914 * 1 2 3 30 30 H 1.09001 * 109.47337 * 59.99182 * 1 2 3 31 31 H 1.09005 * 109.46641 * 240.00323 * 2 1 3 32 32 H 1.08992 * 109.46979 * 120.00322 * 2 1 3 33 33 H 1.07998 * 119.94415 * 359.97438 * 5 4 3 34 34 H 1.07995 * 120.05931 * 180.24775 * 6 5 4 35 35 H 1.08002 * 119.99793 * 46.16883 * 8 7 6 36 36 H 1.08000 * 120.00448 * 191.08305 * 9 8 7 37 37 H 0.96997 * 120.00316 * 359.97438 * 12 10 9 38 38 H 0.97001 * 119.99851 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47096 * 55.00324 * 23 13 12 40 40 H 1.09005 * 109.46759 * 174.99462 * 23 13 12 41 41 H 1.08996 * 109.47885 * 300.00390 * 24 23 13 42 42 H 1.09005 * 109.47332 * 60.00362 * 24 23 13 43 43 H 1.09006 * 109.47522 * 179.97438 * 24 23 13 44 44 H 1.08000 * 120.05542 * 180.23039 * 25 7 6 45 45 H 1.08994 * 109.46966 * 90.00072 * 27 26 25 46 46 H 1.09009 * 109.47043 * 210.00129 * 27 26 25 47 47 H 1.08997 * 109.47273 * 329.99719 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 0.0005 5 6 4.1968 0.4207 0.0004 6 6 5.5621 0.5955 -0.0050 7 6 6.0997 1.8881 0.0010 8 6 7.5571 2.0807 0.0010 9 6 8.1201 2.9716 0.8443 10 6 7.3246 3.5658 1.9181 11 8 6.1955 3.1648 2.1325 12 7 7.8416 4.5575 2.6702 13 6 7.0446 5.1531 3.7455 14 1 5.9965 5.1815 3.4479 15 6 7.5291 6.5548 4.0127 16 1 8.3491 6.9613 3.4392 17 6 6.9256 7.3184 4.9893 18 7 7.3482 8.5419 5.2220 19 14 5.5079 6.6153 5.9817 20 1 6.0389 5.9358 7.1905 21 1 4.5973 7.7145 6.3914 22 1 4.7602 5.6367 5.1518 23 6 7.1916 4.3120 5.0152 24 6 6.5857 2.9266 4.7821 25 6 5.2450 2.9964 0.0011 26 6 3.8808 2.8106 0.0006 27 6 2.9593 4.0030 0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.7810 -0.5760 0.0003 34 1 6.2173 -0.2629 -0.0091 35 1 8.1768 1.5125 -0.6769 36 1 9.1580 3.2457 0.7261 37 1 8.7415 4.8769 2.4996 38 1 6.9239 9.0791 5.9093 39 1 8.2480 4.2097 5.2629 40 1 6.6713 4.8023 5.8380 41 1 5.5292 3.0289 4.5344 42 1 7.1060 2.4363 3.9592 43 1 6.6908 2.3272 5.6865 44 1 5.6549 3.9955 0.0019 45 1 2.7375 4.2903 -1.0276 46 1 2.0327 3.7463 0.5137 47 1 3.4410 4.8347 0.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492592081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:34 Heat of formation + Delta-G solvation = -51.123879 kcal Electronic energy + Delta-G solvation = -27112.213966 eV Core-core repulsion = 23453.077348 eV Total energy + Delta-G solvation = -3659.136618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.33176 -40.61425 -38.62667 -37.03138 -34.75293 -34.35415 -33.48371 -33.01662 -32.34793 -30.02773 -29.16591 -27.74999 -25.44427 -24.79596 -24.05090 -22.60200 -22.14756 -21.43640 -20.47567 -19.04234 -18.82476 -17.72045 -17.50152 -17.04349 -17.00391 -16.32869 -16.15346 -15.42107 -15.32181 -14.97479 -14.92235 -14.73444 -14.48081 -14.11048 -14.07572 -13.89246 -13.65241 -13.63179 -13.52980 -13.33546 -13.21518 -12.94420 -12.78506 -12.61226 -12.58275 -12.39475 -12.21434 -11.86580 -11.70652 -11.61339 -11.37727 -11.22103 -10.86466 -10.54028 -10.43352 -9.74294 -9.35738 -8.60583 -8.39200 -6.43527 -0.04997 0.54470 1.01874 1.23872 1.32260 1.42355 2.24154 2.31320 2.58184 2.69890 2.91864 2.97417 3.87586 3.88544 3.92922 4.05566 4.11043 4.18895 4.24908 4.32804 4.35355 4.36999 4.40583 4.49644 4.59672 4.67523 4.70459 4.75419 4.84548 4.87341 4.93165 4.99410 5.00342 5.12662 5.18578 5.20412 5.20888 5.26794 5.40698 5.43854 5.48163 5.53316 5.58446 5.75267 5.79375 5.94637 6.18879 6.54112 6.59213 7.03763 7.20958 7.63786 8.76168 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003915 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.310326 B = 7149.862226 C = 8131.449777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.332 6.332 4 C 0.123 3.877 5 C -0.220 4.220 6 C -0.069 4.069 7 C -0.110 4.110 8 C -0.014 4.014 9 C -0.218 4.218 10 C 0.519 3.481 11 O -0.563 6.563 12 N -0.700 5.700 13 C 0.255 3.745 14 H 0.018 0.982 15 C -0.530 4.530 16 H 0.056 0.944 17 C 0.030 3.970 18 N -0.934 5.934 19 Si 0.935 3.065 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.264 1.264 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.017 4.017 26 C -0.152 4.152 27 C -0.096 4.096 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.175 0.825 36 H 0.161 0.839 37 H 0.403 0.597 38 H 0.269 0.731 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -20.602 -13.343 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.246 6.246 4 C 0.077 3.923 5 C -0.239 4.239 6 C -0.086 4.086 7 C -0.110 4.110 8 C -0.034 4.034 9 C -0.238 4.238 10 C 0.310 3.690 11 O -0.445 6.445 12 N -0.349 5.349 13 C 0.149 3.851 14 H 0.036 0.964 15 C -0.569 4.569 16 H 0.074 0.926 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.763 3.237 20 H -0.187 1.187 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.174 4.174 24 C -0.185 4.185 25 C -0.035 4.035 26 C -0.153 4.153 27 C -0.153 4.153 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.179 0.821 37 H 0.238 0.762 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.206 -20.553 -13.059 25.129 hybrid contribution -0.095 0.663 0.936 1.151 sum -6.301 -19.890 -12.122 24.130 Atomic orbital electron populations 1.21801 0.91580 1.04166 1.02979 1.23050 0.96816 0.80935 1.02147 1.85993 1.18971 1.31196 1.88486 1.19022 0.82675 0.93707 0.96861 1.21259 0.94357 0.98043 1.10217 1.21234 0.94577 0.96306 0.96532 1.19015 0.93809 0.93225 1.04973 1.22624 0.92254 0.93255 0.95221 1.23192 1.01913 1.01622 0.97075 1.19078 0.86979 0.79707 0.83283 1.90863 1.20048 1.62402 1.71184 1.46018 1.18850 1.36094 1.33935 1.18661 0.91641 0.90362 0.84417 0.96368 1.21333 1.18545 0.97474 1.19512 0.92581 1.25516 0.98811 0.94849 0.97755 1.69976 1.43295 1.10111 1.33949 0.86054 0.80030 0.77530 0.80075 1.18673 1.22095 1.18914 1.22188 1.00832 0.95984 0.98394 1.21702 0.99893 0.96269 1.00642 1.20760 0.91677 0.97847 0.93216 1.19248 0.94456 0.93286 1.08303 1.20492 0.98027 0.94645 1.02133 0.87937 0.92485 0.91705 0.90616 0.91794 0.83388 0.82999 0.80738 0.82145 0.76173 0.92138 0.91477 0.94237 0.94950 0.92438 0.92789 0.88116 0.90534 0.91975 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.80 5.45 71.98 0.39 1.19 16 3 O -0.33 -8.96 9.16 -90.59 -0.83 -9.79 16 4 C 0.12 3.63 6.67 22.65 0.15 3.78 16 5 C -0.22 -5.40 9.01 22.32 0.20 -5.20 16 6 C -0.07 -1.63 9.79 22.56 0.22 -1.41 16 7 C -0.11 -3.03 4.43 -20.14 -0.09 -3.12 16 8 C -0.01 -0.31 9.79 23.82 0.23 -0.08 16 9 C -0.22 -5.44 9.91 23.61 0.23 -5.20 16 10 C 0.52 18.58 5.43 86.33 0.47 19.04 16 11 O -0.56 -23.44 9.48 -4.41 -0.04 -23.48 16 12 N -0.70 -27.32 5.02 -450.48 -2.26 -29.58 16 13 C 0.25 12.16 1.83 44.25 0.08 12.25 16 14 H 0.02 1.00 6.63 -2.39 -0.02 0.98 16 15 C -0.53 -29.34 9.31 25.60 0.24 -29.11 16 16 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 17 C 0.03 1.74 5.45 84.65 0.46 2.20 16 18 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 19 Si 0.94 46.21 24.41 68.60 1.67 47.89 16 20 H -0.26 -12.15 6.83 99.48 0.68 -11.48 16 21 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.26 -13.15 6.53 99.48 0.65 -12.50 16 23 C -0.14 -6.00 5.11 30.59 0.16 -5.84 16 24 C -0.13 -5.11 8.51 71.98 0.61 -4.50 16 25 C -0.02 -0.55 6.34 22.55 0.14 -0.41 16 26 C -0.15 -5.03 5.89 -19.81 -0.12 -5.15 16 27 C -0.10 -3.02 9.78 71.24 0.70 -2.32 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.08 7.65 -2.38 -0.02 1.06 16 32 H 0.06 1.07 7.65 -2.39 -0.02 1.05 16 33 H 0.15 2.69 6.27 -2.91 -0.02 2.67 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.40 13.91 8.52 -92.71 -0.79 13.12 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.04 1.84 3.22 -2.38 -0.01 1.84 16 41 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 42 H 0.06 2.25 5.64 -2.38 -0.01 2.23 16 43 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.10 3.61 7.26 -2.91 -0.02 3.59 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 1.93 7.52 -2.38 -0.02 1.91 16 47 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 Total: -1.00 -71.91 371.07 3.76 -68.15 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.10 Total: 28.58 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.82 Total: -25.16 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.96 Total: -86.18 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.87 Total: -33.27 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.89 kcal Total: -71.91 3.76 -68.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492592081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.025 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds