Wall clock time and date at job start Fri Apr 10 2020 23:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 N 1.46499 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.37102 * 119.99519 * 264.76909 * 4 3 2 6 6 H 1.08001 * 119.99883 * 138.85782 * 5 4 3 7 7 C 1.38953 * 120.00106 * 318.85397 * 5 4 3 8 8 N 1.31409 * 119.99977 * 341.83348 * 7 5 4 9 9 Si 1.86794 * 119.99877 * 161.83451 * 7 5 4 10 10 H 1.48509 * 109.47403 * 59.99961 * 9 7 5 11 11 H 1.48504 * 109.47184 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47317 * 299.99914 * 9 7 5 13 13 C 1.34775 * 120.00099 * 84.76660 * 4 3 2 14 14 O 1.21293 * 119.99759 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99983 * 0.02562 * 13 4 3 16 16 C 1.53006 * 109.46912 * 179.97438 * 15 13 4 17 17 C 1.50696 * 109.46912 * 179.97438 * 16 15 13 18 18 O 1.21255 * 120.00166 * 359.97438 * 17 16 15 19 19 C 1.47173 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.39855 * 120.17406 * 359.72765 * 19 17 16 21 21 C 1.37883 * 119.82531 * 179.69803 * 20 19 17 22 22 C 1.38402 * 120.16763 * 0.57272 * 21 20 19 23 23 C 1.50702 * 119.82232 * 179.69852 * 22 21 20 24 24 C 1.53005 * 109.47464 * 270.02566 * 23 22 21 25 25 C 1.38400 * 120.35621 * 359.72219 * 22 21 20 26 26 C 1.37889 * 120.16956 * 359.97438 * 25 22 21 27 27 H 1.09001 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46865 * 299.99891 * 1 2 3 29 29 H 1.08998 * 109.47522 * 59.99847 * 1 2 3 30 30 H 1.09000 * 109.46865 * 240.00109 * 2 1 3 31 31 H 1.08998 * 109.47088 * 120.00467 * 2 1 3 32 32 H 1.08999 * 109.46825 * 60.00121 * 3 2 1 33 33 H 1.08996 * 109.46959 * 299.99870 * 3 2 1 34 34 H 0.96998 * 120.00217 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47205 * 59.99892 * 15 13 4 36 36 H 1.08994 * 109.47074 * 299.99285 * 15 13 4 37 37 H 1.08995 * 109.47163 * 60.00001 * 16 15 13 38 38 H 1.09001 * 109.47295 * 299.99988 * 16 15 13 39 39 H 1.08000 * 120.08027 * 359.97438 * 20 19 17 40 40 H 1.07996 * 119.91357 * 180.27447 * 21 20 19 41 41 H 1.09002 * 109.47023 * 30.02438 * 23 22 21 42 42 H 1.09001 * 109.47779 * 150.02417 * 23 22 21 43 43 H 1.09002 * 109.46896 * 299.99949 * 24 23 22 44 44 H 1.08998 * 109.46582 * 59.99719 * 24 23 22 45 45 H 1.08994 * 109.47768 * 179.97438 * 24 23 22 46 46 H 1.07993 * 119.91650 * 179.97438 * 25 22 21 47 47 H 1.07998 * 120.09003 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5506 1.1816 6 1 5.0710 0.9483 1.3522 7 6 3.7538 2.4351 2.1600 8 7 2.9283 3.4078 1.8451 9 14 4.3399 2.2415 3.9231 10 1 5.8196 2.3587 3.9686 11 1 3.7336 3.3034 4.7657 12 1 3.9329 0.9089 4.4365 13 6 4.1784 1.3363 -1.1632 14 8 5.3913 1.3367 -1.1637 15 6 3.4244 1.2180 -2.4626 16 6 4.4182 1.1126 -3.6212 17 6 3.6642 0.9937 -4.9205 18 8 2.4517 0.9928 -4.9200 19 6 4.3996 0.8787 -6.1901 20 6 5.7982 0.8850 -6.1955 21 6 6.4799 0.7705 -7.3885 22 6 5.7837 0.6615 -8.5797 23 6 6.5367 0.5436 -9.8798 24 6 6.7911 1.9403 -10.4504 25 6 4.3997 0.6606 -8.5834 26 6 3.7035 0.7680 -7.3980 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.6235 4.0255 2.5280 35 1 2.7980 2.0992 -2.6007 36 1 2.7975 0.3267 -2.4391 37 1 5.0449 0.2316 -3.4833 38 1 5.0449 2.0042 -3.6446 39 1 6.3426 0.9749 -5.2671 40 1 7.5598 0.7708 -7.3939 41 1 7.4894 0.0440 -9.7038 42 1 5.9476 -0.0371 -10.5896 43 1 5.8384 2.4399 -10.6263 44 1 7.3802 2.5209 -9.7406 45 1 7.3361 1.8551 -11.3904 46 1 3.8637 0.5755 -9.5170 47 1 2.6235 0.7676 -7.4025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060556227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:59 Heat of formation + Delta-G solvation = -70.342290 kcal Electronic energy + Delta-G solvation = -25848.453660 eV Core-core repulsion = 22188.483670 eV Total energy + Delta-G solvation = -3659.969991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17311 -38.82512 -38.19692 -35.25370 -34.38476 -32.96678 -32.21912 -31.15938 -30.99644 -29.95432 -26.52814 -25.56722 -24.61661 -23.51615 -22.63514 -21.57893 -20.89545 -19.61229 -18.59539 -17.18617 -16.72416 -16.10721 -15.70239 -15.51041 -15.40757 -14.85027 -14.50252 -14.20036 -14.16962 -13.91444 -13.75906 -13.69670 -13.56951 -13.46329 -12.86547 -12.67685 -12.53764 -12.13112 -11.94857 -11.65581 -11.55618 -11.40536 -11.34290 -11.29233 -11.24160 -11.04775 -10.87982 -10.76961 -10.52563 -10.32881 -10.19449 -9.85480 -9.54949 -9.15785 -8.90219 -8.86685 -8.35311 -7.36749 -6.27597 -3.96343 0.57592 1.22083 2.42847 3.22236 3.27364 3.30724 3.65940 3.96159 4.01951 4.23076 4.43411 4.52978 4.79796 4.83221 4.93909 4.99949 5.06280 5.15678 5.20142 5.24497 5.27704 5.51422 5.53660 5.58074 5.62748 5.65508 5.72449 5.76357 5.82535 5.85558 5.88765 6.03164 6.16276 6.18483 6.29871 6.32408 6.33887 6.35167 6.46469 6.49754 6.54454 6.68704 6.72605 6.97517 7.30255 7.61932 7.64531 8.34269 8.56260 9.23780 9.45195 10.07286 10.77489 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021272 B = 0.002546 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.950012 B =10996.055182 C =11927.470123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.109 3.891 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.087 0.913 7 C 0.038 3.962 8 N -0.872 5.872 9 Si 0.918 3.082 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.462 3.538 14 O -0.585 6.585 15 C -0.126 4.126 16 C -0.145 4.145 17 C 0.395 3.605 18 O -0.455 6.455 19 C -0.169 4.169 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.057 4.057 23 C -0.089 4.089 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.061 4.061 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.125 0.875 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -5.081 -19.592 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.016 4.016 4 N -0.160 5.160 5 C -0.437 4.437 6 H 0.104 0.896 7 C -0.166 4.166 8 N -0.509 5.509 9 Si 0.744 3.256 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.251 3.749 14 O -0.470 6.470 15 C -0.166 4.166 16 C -0.183 4.183 17 C 0.273 3.727 18 O -0.330 6.330 19 C -0.170 4.170 20 C -0.084 4.084 21 C -0.150 4.150 22 C -0.057 4.057 23 C -0.126 4.126 24 C -0.205 4.205 25 C -0.152 4.152 26 C -0.079 4.079 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.143 0.857 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.286 -4.901 -19.459 20.107 hybrid contribution 0.151 0.043 0.887 0.901 sum 1.438 -4.858 -18.572 19.250 Atomic orbital electron populations 1.21679 0.96361 1.00660 1.01589 1.21983 0.94940 0.99368 1.01623 1.21540 0.82232 0.94257 1.03522 1.43430 1.04466 1.63250 1.04861 1.19315 1.11912 1.21429 0.91076 0.89570 1.25421 0.97086 0.93593 1.00501 1.69921 1.33549 1.13434 1.34024 0.86151 0.79257 0.77890 0.82288 1.19771 1.21024 1.19909 1.20338 0.88016 0.81650 0.84947 1.90497 1.14128 1.55271 1.87062 1.21442 0.98290 1.03813 0.93088 1.21731 0.99558 1.05493 0.91470 1.22735 0.88941 0.70910 0.90114 1.90494 1.16227 1.36747 1.89566 1.20635 0.94588 1.06680 0.95136 1.21602 0.93134 0.94727 0.98948 1.21029 1.00126 1.02104 0.91774 1.20172 0.93872 0.96425 0.95238 1.20622 1.00069 0.98246 0.93694 1.21751 1.02003 0.95999 1.00730 1.20982 0.93576 1.02634 0.98055 1.21426 1.00592 0.94553 0.91330 0.93492 0.92805 0.93039 0.93110 0.91798 0.87889 0.93243 0.92262 0.89713 0.89939 0.87885 0.87755 0.84411 0.85468 0.90736 0.90856 0.92453 0.92336 0.92273 0.85702 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.14 -2.63 6.17 -26.73 -0.16 -2.79 16 3 C 0.11 2.42 4.69 -4.04 -0.02 2.40 16 4 N -0.44 -11.32 2.50 -114.81 -0.29 -11.61 16 5 C -0.31 -8.64 8.84 -14.93 -0.13 -8.77 16 6 H 0.09 2.50 7.82 -52.49 -0.41 2.09 16 7 C 0.04 1.03 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -23.89 11.61 55.50 0.64 -23.24 16 9 Si 0.92 20.82 29.59 -169.99 -5.03 15.79 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.46 11.33 7.59 -10.99 -0.08 11.24 16 14 O -0.59 -15.99 15.89 5.55 0.09 -15.90 16 15 C -0.13 -2.44 3.59 -27.88 -0.10 -2.54 16 16 C -0.14 -2.36 3.60 -27.88 -0.10 -2.46 16 17 C 0.39 5.98 7.12 -30.68 -0.22 5.76 16 18 O -0.45 -7.92 15.98 5.58 0.09 -7.83 16 19 C -0.17 -2.18 5.87 -105.06 -0.62 -2.80 16 20 C -0.07 -0.74 9.47 -39.11 -0.37 -1.11 16 21 C -0.13 -1.27 9.68 -39.65 -0.38 -1.65 16 22 C -0.06 -0.51 5.14 -104.50 -0.54 -1.05 16 23 C -0.09 -0.58 6.06 -27.88 -0.17 -0.75 16 24 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 25 C -0.13 -1.29 9.68 -39.65 -0.38 -1.67 16 26 C -0.06 -0.71 9.60 -39.10 -0.38 -1.08 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.92 6.60 -51.93 -0.34 0.57 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 2.52 5.76 -51.93 -0.30 2.22 16 33 H 0.05 1.04 6.66 -51.93 -0.35 0.70 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.08 1.64 7.37 -51.93 -0.38 1.26 16 36 H 0.08 1.52 6.50 -51.93 -0.34 1.18 16 37 H 0.10 1.61 8.05 -51.93 -0.42 1.19 16 38 H 0.10 1.68 8.04 -51.93 -0.42 1.27 16 39 H 0.14 1.44 7.05 -52.49 -0.37 1.07 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -32.14 387.82 -9.16 -41.30 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.50 Total: 4.38 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.00 Total: -8.73 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.36 Total: -34.85 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.18 Total: -23.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.14 -9.16 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060556227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.039 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds