Wall clock time and date at job start Fri Apr 10 2020 23:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47274 * 2 1 4 4 N 1.46498 * 109.47023 * 120.00702 * 2 1 3 5 5 C 1.34776 * 119.99551 * 306.19353 * 4 2 1 6 6 O 1.21289 * 119.99812 * 185.18783 * 5 4 2 7 7 C 1.50701 * 120.00556 * 5.18544 * 5 4 2 8 8 C 1.50696 * 109.47855 * 193.95560 * 7 5 4 9 9 C 1.38298 * 119.93045 * 269.73224 * 8 7 5 10 10 C 1.38098 * 120.06848 * 179.72184 * 9 8 7 11 11 C 1.38875 * 119.93233 * 0.56713 * 10 9 8 12 12 O 1.35753 * 120.07406 * 179.68535 * 11 10 9 13 13 C 1.34831 * 116.99976 * 186.85379 * 12 11 10 14 14 H 1.07993 * 120.00126 * 6.09566 * 13 12 11 15 15 C 1.38647 * 119.99568 * 186.10122 * 13 12 11 16 16 N 1.31557 * 120.00645 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47202 * 90.00116 * 17 15 13 19 19 H 1.48499 * 109.47159 * 209.99791 * 17 15 13 20 20 H 1.48491 * 109.47299 * 329.99724 * 17 15 13 21 21 C 1.38880 * 119.85951 * 359.70408 * 11 10 9 22 22 C 1.38105 * 119.93099 * 359.97438 * 21 11 10 23 23 C 1.46499 * 120.00292 * 126.20117 * 4 2 1 24 24 C 1.53787 * 113.69089 * 157.68531 * 23 4 2 25 25 C 1.53779 * 87.08003 * 89.12477 * 24 23 4 26 26 C 1.53775 * 113.61085 * 255.21710 * 23 4 2 27 27 H 1.08999 * 109.47094 * 316.26186 * 1 2 3 28 28 H 1.08996 * 109.47019 * 76.26828 * 1 2 3 29 29 H 1.09002 * 109.46723 * 196.26220 * 1 2 3 30 30 H 1.09000 * 109.47064 * 240.00217 * 2 1 3 31 31 H 1.09000 * 109.46942 * 190.02316 * 3 2 1 32 32 H 1.08997 * 109.46769 * 310.02748 * 3 2 1 33 33 H 1.08997 * 109.46672 * 70.02318 * 3 2 1 34 34 H 1.08998 * 109.46677 * 313.95956 * 7 5 4 35 35 H 1.09006 * 109.47010 * 73.95240 * 7 5 4 36 36 H 1.08005 * 119.96616 * 359.97160 * 9 8 7 37 37 H 1.08004 * 120.03507 * 180.27221 * 10 9 8 38 38 H 0.96997 * 120.00615 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.03762 * 179.97438 * 21 11 10 40 40 H 1.08003 * 119.96186 * 179.97438 * 22 21 11 41 41 H 1.08998 * 112.84787 * 26.41675 * 23 4 2 42 42 H 1.08996 * 113.60990 * 203.67386 * 24 23 4 43 43 H 1.08998 * 113.61088 * 334.57766 * 24 23 4 44 44 H 1.08999 * 113.61422 * 270.88199 * 25 24 23 45 45 H 1.09006 * 113.61293 * 139.98224 * 25 24 23 46 46 H 1.09004 * 113.61730 * 25.35351 * 26 23 4 47 47 H 1.09008 * 113.61146 * 156.16667 * 26 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.5931 -0.3076 2.4162 6 8 2.0671 -0.8151 3.4106 7 6 0.5286 0.7513 2.5451 8 6 0.4757 1.2399 3.9697 9 6 -0.3618 0.6221 4.8805 10 6 -0.4082 1.0638 6.1881 11 6 0.3785 2.1371 6.5853 12 8 0.3303 2.5777 7.8684 13 6 1.0082 3.7079 8.1534 14 1 1.4743 4.2726 7.3596 15 6 1.1070 4.1448 9.4655 16 7 0.5389 3.4570 10.4324 17 14 2.0468 5.7101 9.8604 18 1 1.1215 6.8703 9.8053 19 1 2.6306 5.6069 11.2220 20 1 3.1355 5.8976 8.8681 21 6 1.2143 2.7590 5.6670 22 6 1.2612 2.3083 4.3624 23 6 2.9690 -1.7978 1.0659 24 6 3.7901 -2.0602 2.3395 25 6 2.6622 -3.0099 2.7763 26 6 2.3358 -3.1821 1.2835 27 1 -0.3633 0.7425 0.7105 28 1 -0.3633 0.2439 -0.9983 29 1 -0.3633 -0.9866 0.2878 30 1 1.8934 -0.5138 -0.8900 31 1 3.1153 1.4476 -0.1789 32 1 1.5380 2.0053 -0.7869 33 1 1.8302 1.9020 0.9658 34 1 0.7636 1.5851 1.8836 35 1 -0.4382 0.3301 2.2694 36 1 -0.9772 -0.2093 4.5698 37 1 -1.0592 0.5781 6.9000 38 1 0.6083 3.7625 11.3504 39 1 1.8270 3.5942 5.9727 40 1 1.9107 2.7918 3.6477 41 1 3.5744 -1.7317 0.1619 42 1 4.7377 -2.5649 2.1517 43 1 3.8954 -1.1840 2.9793 44 1 1.8714 -2.5176 3.3422 45 1 3.0201 -3.9225 3.2532 46 1 1.2671 -3.2119 1.0707 47 1 2.8852 -3.9935 0.8058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078184260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:36:13 Heat of formation + Delta-G solvation = 2.388598 kcal Electronic energy + Delta-G solvation = -27154.090374 eV Core-core repulsion = 23497.274231 eV Total energy + Delta-G solvation = -3656.816143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13917 -40.71446 -38.76125 -37.63677 -37.49997 -34.37645 -32.70840 -31.79827 -31.76813 -28.61926 -27.98857 -27.15913 -26.47274 -25.79493 -23.64981 -23.42080 -22.03072 -21.19989 -19.85659 -19.42273 -18.85069 -17.63656 -17.13475 -16.72356 -16.33560 -16.18845 -15.90706 -15.62559 -15.58019 -15.34968 -15.11219 -14.86553 -14.70095 -14.59110 -14.35099 -13.98546 -13.61065 -13.41598 -13.21116 -13.15210 -12.97508 -12.75717 -12.55337 -12.46702 -12.32433 -12.17659 -12.13613 -12.01178 -11.37179 -11.35087 -11.22632 -11.20478 -11.08338 -10.79291 -10.23245 -9.76826 -9.41742 -8.88862 -8.47548 -6.15907 0.60694 0.67571 1.33531 1.43376 1.51687 1.72514 2.06032 2.17414 2.82519 3.15615 3.51357 3.58997 3.78483 3.84279 3.92994 4.01121 4.06917 4.15471 4.17398 4.20113 4.27085 4.36850 4.44201 4.58591 4.61275 4.63429 4.76192 4.83284 4.85641 4.93972 4.94285 5.00745 5.03293 5.07814 5.12748 5.17416 5.27880 5.29453 5.34876 5.42356 5.45809 5.56882 5.65608 5.71601 5.78081 5.90182 6.02228 6.22067 6.56170 6.96908 7.41211 7.78728 8.76132 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.002993 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.012028 B = 9351.738065 C = 9680.856504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.134 3.866 3 C -0.179 4.179 4 N -0.594 5.594 5 C 0.504 3.496 6 O -0.545 6.545 7 C -0.094 4.094 8 C -0.143 4.143 9 C -0.055 4.055 10 C -0.205 4.205 11 C 0.112 3.888 12 O -0.234 6.234 13 C -0.413 4.413 14 H 0.100 0.900 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.020 2.980 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.254 1.254 21 C -0.241 4.241 22 C -0.063 4.063 23 C 0.125 3.875 24 C -0.146 4.146 25 C -0.155 4.155 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -7.318 -28.475 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.032 3.968 3 C -0.236 4.236 4 N -0.327 5.327 5 C 0.294 3.706 6 O -0.424 6.424 7 C -0.133 4.133 8 C -0.144 4.144 9 C -0.073 4.073 10 C -0.224 4.224 11 C 0.062 3.938 12 O -0.141 6.141 13 C -0.490 4.490 14 H 0.117 0.883 15 C -0.222 4.222 16 N -0.561 5.561 17 Si 0.839 3.161 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.177 1.177 21 C -0.260 4.260 22 C -0.081 4.081 23 C 0.021 3.979 24 C -0.183 4.183 25 C -0.192 4.192 26 C -0.180 4.180 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.822 -7.666 -27.567 28.752 hybrid contribution 0.403 0.453 1.175 1.322 sum 3.225 -7.213 -26.393 27.550 Atomic orbital electron populations 1.22727 0.93967 1.03051 1.04661 1.21341 0.95120 0.93249 0.87062 1.22509 1.02096 0.95775 1.03262 1.47918 1.44673 1.33866 1.06205 1.20904 0.83403 0.83385 0.82898 1.90650 1.57584 1.55041 1.39127 1.21376 0.99591 0.98712 0.93580 1.19315 1.00590 0.98360 0.96150 1.20803 0.97698 0.97842 0.90921 1.20420 1.04281 0.99808 0.97934 1.19917 0.94586 0.94053 0.85199 1.83953 1.65825 1.40999 1.23354 1.21804 1.33460 0.99044 0.94644 0.88276 1.26625 0.98323 1.03474 0.93738 1.70190 1.43963 1.41023 1.00881 0.84578 0.78017 0.75154 0.78381 1.18502 1.19575 1.17727 1.21211 1.04584 1.05052 0.95165 1.20896 0.97131 0.95853 0.94231 1.22052 0.90599 0.86199 0.99018 1.23219 0.97462 1.00148 0.97505 1.23406 1.00342 0.98176 0.97278 1.23433 1.01179 0.97475 0.95946 0.90488 0.89206 0.92583 0.87064 0.92348 0.88912 0.92409 0.85359 0.85712 0.84184 0.87149 0.91835 0.86520 0.84557 0.86460 0.89462 0.92471 0.89516 0.93509 0.91760 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 8.12 71.98 0.58 -1.03 16 2 C 0.13 1.38 3.29 44.99 0.15 1.53 16 3 C -0.18 -1.79 9.08 71.98 0.65 -1.13 16 4 N -0.59 -10.53 2.63 -771.13 -2.03 -12.56 16 5 C 0.50 12.68 6.62 87.66 0.58 13.26 16 6 O -0.55 -18.78 9.69 -3.06 -0.03 -18.81 16 7 C -0.09 -2.08 3.46 29.10 0.10 -1.98 16 8 C -0.14 -4.71 4.42 -19.84 -0.09 -4.80 16 9 C -0.05 -2.00 9.69 22.25 0.22 -1.79 16 10 C -0.21 -9.47 9.99 22.39 0.22 -9.24 16 11 C 0.11 5.98 6.64 22.58 0.15 6.13 16 12 O -0.23 -14.85 9.76 -22.77 -0.22 -15.07 16 13 C -0.41 -25.09 9.42 67.92 0.64 -24.45 16 14 H 0.10 5.54 5.34 -2.91 -0.02 5.52 16 15 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 16 N -0.92 -58.48 13.67 21.61 0.30 -58.18 16 17 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 21 C -0.24 -11.20 9.12 22.39 0.20 -11.00 16 22 C -0.06 -2.32 9.69 22.25 0.22 -2.10 16 23 C 0.13 2.16 4.54 45.52 0.21 2.36 16 24 C -0.15 -3.45 7.17 31.12 0.22 -3.22 16 25 C -0.16 -3.92 7.26 31.12 0.23 -3.69 16 26 C -0.14 -2.43 7.86 31.12 0.24 -2.19 16 27 H 0.08 0.73 4.38 -2.39 -0.01 0.72 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.70 7.88 -2.39 -0.02 0.68 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.54 8.11 -2.39 -0.02 0.52 16 33 H 0.06 0.77 4.89 -2.39 -0.01 0.76 16 34 H 0.13 2.18 3.92 -2.39 -0.01 2.17 16 35 H 0.13 2.19 6.25 -2.38 -0.01 2.18 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.12 5.50 5.75 -2.91 -0.02 5.49 16 40 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.12 1.34 8.07 -2.39 -0.02 1.32 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.79 6.13 -2.39 -0.01 1.78 16 44 H 0.09 2.80 5.11 -28.77 -0.15 2.65 16 45 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -79.79 363.81 5.88 -73.91 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.85 Total: 28.82 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 5.00 Total: -44.33 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.73 Total: -70.74 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.25 Total: -33.88 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -79.79 5.88 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078184260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.297 kcal (2) G-P(sol) polarization free energy of solvation -79.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds