Wall clock time and date at job start Fri Apr 10 2020 23:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99984 * 2 1 4 4 H 1.08998 * 109.46972 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47249 * 239.99237 * 3 2 1 6 6 C 1.53009 * 109.46801 * 65.00093 * 5 3 2 7 7 C 1.53002 * 109.46981 * 119.99282 * 3 2 1 8 8 C 1.50701 * 109.47329 * 294.99775 * 7 3 2 9 9 O 1.21283 * 119.99729 * 0.02562 * 8 7 3 10 10 N 1.34775 * 119.99767 * 180.02562 * 8 7 3 11 11 C 1.39925 * 119.99975 * 184.62116 * 10 8 7 12 12 C 1.38930 * 120.04278 * 144.92613 * 11 10 8 13 13 C 1.38121 * 120.04157 * 179.97438 * 12 11 10 14 14 C 1.38215 * 120.12258 * 359.76472 * 13 12 11 15 15 C 1.38769 * 120.08313 * 0.51214 * 14 13 12 16 16 O 1.35903 * 120.02227 * 179.74338 * 15 14 13 17 17 C 1.42898 * 116.99628 * 359.72586 * 16 15 14 18 18 C 1.53000 * 109.47100 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47173 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99849 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99492 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99237 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00392 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47299 * 89.99785 * 23 21 19 25 25 H 1.48499 * 109.47230 * 209.99713 * 23 21 19 26 26 H 1.48500 * 109.47024 * 330.00326 * 23 21 19 27 27 C 1.38627 * 119.95856 * 359.46855 * 15 14 13 28 28 H 1.08003 * 120.00185 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99965 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00185 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47190 * 184.99640 * 5 3 2 32 32 H 1.09000 * 109.47140 * 305.00500 * 5 3 2 33 33 H 1.08997 * 109.47090 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46918 * 300.00271 * 6 5 3 35 35 H 1.08994 * 109.47001 * 59.99882 * 6 5 3 36 36 H 1.08999 * 109.46990 * 174.99931 * 7 3 2 37 37 H 1.09000 * 109.47314 * 55.00452 * 7 3 2 38 38 H 0.97001 * 120.00459 * 4.61990 * 10 8 7 39 39 H 1.08002 * 119.97856 * 359.97438 * 12 11 10 40 40 H 1.07989 * 119.93869 * 180.02562 * 13 12 11 41 41 H 1.07997 * 119.96253 * 180.27805 * 14 13 12 42 42 H 1.08998 * 109.47190 * 300.00094 * 17 16 15 43 43 H 1.08999 * 109.47615 * 60.00174 * 17 16 15 44 44 H 1.09008 * 109.47021 * 300.00003 * 18 17 16 45 45 H 1.08999 * 109.47352 * 59.99825 * 18 17 16 46 46 H 0.97005 * 119.99942 * 180.02562 * 22 21 19 47 47 H 1.08007 * 120.06294 * 180.25276 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9433 1.3861 -1.2491 6 6 2.0566 1.4306 -2.4953 7 6 2.9430 1.3862 1.2494 8 6 2.0695 1.4302 2.4766 9 8 0.8624 1.3993 2.3632 10 7 2.6298 1.5040 3.7002 11 6 1.8245 1.4474 4.8430 12 6 2.2887 0.8165 5.9905 13 6 1.4939 0.7611 7.1187 14 6 0.2374 1.3368 7.1111 15 6 -0.2337 1.9633 5.9659 16 8 -1.4714 2.5244 5.9581 17 6 -2.2354 2.4270 7.1617 18 6 -3.5899 3.1102 6.9628 19 6 -4.3954 3.0080 8.2324 20 1 -3.9827 2.5056 9.0947 21 6 -5.6592 3.5560 8.2929 22 7 -6.3623 3.4663 9.4006 23 14 -6.3726 4.4256 6.8016 24 1 -7.1077 3.4459 5.9618 25 1 -7.3047 5.4916 7.2490 26 1 -5.2727 5.0306 6.0082 27 6 0.5613 2.0213 4.8317 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 3.5541 2.2878 -1.2055 32 1 3.5907 0.5104 -1.2950 33 1 2.6833 1.4879 -3.3853 34 1 1.4457 0.5290 -2.5389 35 1 1.4092 2.3062 -2.4495 36 1 3.5539 2.2879 1.2057 37 1 3.5905 0.5106 1.2954 38 1 3.5914 1.5963 3.7886 39 1 3.2717 0.3691 6.0003 40 1 1.8566 0.2706 8.0099 41 1 -0.3801 1.2959 7.9961 42 1 -2.3915 1.3770 7.4091 43 1 -1.6976 2.9155 7.9742 44 1 -3.4342 4.1604 6.7152 45 1 -4.1277 2.6213 6.1505 46 1 -7.2516 3.8515 9.4432 47 1 0.1979 2.5120 3.9408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355216979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:50 Heat of formation + Delta-G solvation = -46.437710 kcal Electronic energy + Delta-G solvation = -25547.231250 eV Core-core repulsion = 21888.297839 eV Total energy + Delta-G solvation = -3658.933410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74751 -39.42777 -37.65798 -36.67828 -34.57206 -33.29709 -31.97557 -31.23173 -30.99849 -29.60848 -28.90200 -25.45628 -24.97444 -22.94379 -22.04157 -21.82582 -20.87152 -20.13205 -19.75669 -18.41121 -17.27187 -16.73923 -16.16604 -15.90785 -15.59290 -15.40869 -15.29690 -15.00558 -14.70001 -14.30461 -14.12438 -13.87893 -13.54203 -13.32876 -13.11587 -12.85595 -12.53337 -12.46395 -12.23793 -11.85619 -11.83036 -11.63647 -11.51699 -11.49193 -11.13611 -10.91990 -10.87126 -10.75028 -10.30588 -10.16239 -9.96751 -9.87346 -9.77491 -9.32124 -9.25201 -8.60138 -8.27871 -7.85320 -6.11509 -4.12118 1.35545 1.61593 2.29333 2.49197 2.82439 3.31297 3.38161 3.44651 3.79125 3.94751 4.38381 4.41671 4.43942 4.44878 4.88676 4.92265 4.99229 5.05993 5.12563 5.15875 5.17561 5.22838 5.33442 5.36362 5.44969 5.52425 5.59013 5.65446 5.67455 5.83485 5.89152 5.93673 5.95355 5.96376 6.00909 6.27953 6.35910 6.44629 6.53576 6.60195 6.68364 6.78281 6.92854 7.14469 7.23427 7.26556 7.64939 7.95832 7.99142 8.40922 8.89180 9.49041 11.00961 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002629 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.048602 B =10646.198544 C =12316.438961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.161 4.161 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.152 4.152 7 C -0.132 4.132 8 C 0.506 3.494 9 O -0.501 6.501 10 N -0.676 5.676 11 C 0.176 3.824 12 C -0.195 4.195 13 C -0.062 4.062 14 C -0.225 4.225 15 C 0.161 3.839 16 O -0.316 6.316 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.526 4.526 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.162 4.162 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.409 0.591 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.265 0.735 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.295 -6.017 -18.499 31.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.172 4.172 8 C 0.293 3.707 9 O -0.373 6.373 10 N -0.322 5.322 11 C 0.082 3.918 12 C -0.216 4.216 13 C -0.081 4.081 14 C -0.244 4.244 15 C 0.114 3.886 16 O -0.229 6.229 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.564 4.564 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.707 3.293 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.183 4.183 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.244 0.756 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 24.130 -5.891 -18.724 31.105 hybrid contribution 0.039 0.266 -0.179 0.323 sum 24.169 -5.625 -18.903 31.195 Atomic orbital electron populations 1.23771 0.95942 1.01628 0.98030 1.22590 0.95983 0.96894 1.02405 1.20173 0.96587 0.97383 0.92252 0.89864 1.21531 0.97820 1.01869 0.94030 1.21762 0.99852 1.02317 0.97010 1.21726 0.98644 1.04498 0.92311 1.20905 0.89606 0.75887 0.84280 1.90782 1.14556 1.46040 1.85961 1.43531 1.10511 1.73549 1.04601 1.17306 0.91442 0.96680 0.86345 1.20647 1.01658 1.05617 0.93679 1.20669 0.93051 0.97012 0.97353 1.21406 0.98609 1.05464 0.98948 1.18949 0.85466 0.91174 0.93057 1.86140 1.24176 1.72410 1.40215 1.23089 0.92699 1.00873 0.83503 1.19592 0.90096 0.96416 0.98591 1.20840 1.00117 1.37864 0.97535 0.90736 1.24932 0.96615 0.95426 0.96063 1.69894 1.11693 1.45463 1.26569 0.86757 0.79376 0.79870 0.83284 1.20038 1.21195 1.18724 1.20397 0.94030 1.05291 0.98594 0.88446 0.89095 0.88127 0.91827 0.91856 0.92909 0.92322 0.92702 0.88535 0.88598 0.75582 0.86157 0.85674 0.84974 0.92483 0.92444 0.95411 0.95799 0.92475 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 13.22 29.01 0.38 -1.30 16 2 C -0.16 -1.48 6.76 -36.03 -0.24 -1.72 16 3 C -0.05 -0.35 1.82 -91.77 -0.17 -0.52 16 4 H 0.08 0.80 7.60 -51.93 -0.39 0.40 16 5 C -0.11 -0.66 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.96 9.73 37.16 0.36 -0.60 16 7 C -0.13 -0.84 5.17 -27.88 -0.14 -0.99 16 8 C 0.51 5.35 7.42 -10.99 -0.08 5.27 16 9 O -0.50 -7.45 11.60 5.56 0.06 -7.39 16 10 N -0.68 -6.46 5.34 -9.88 -0.05 -6.51 16 11 C 0.18 2.32 6.30 -83.72 -0.53 1.79 16 12 C -0.20 -2.28 9.96 -39.37 -0.39 -2.67 16 13 C -0.06 -0.79 10.03 -39.63 -0.40 -1.19 16 14 C -0.22 -3.54 9.04 -39.39 -0.36 -3.90 16 15 C 0.16 2.92 6.68 -39.24 -0.26 2.65 16 16 O -0.32 -6.62 10.13 -19.44 -0.20 -6.82 16 17 C 0.07 1.55 4.68 37.16 0.17 1.72 16 18 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 16 19 C -0.53 -15.06 9.66 -34.44 -0.33 -15.40 16 20 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 23 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 27 C -0.16 -2.70 8.64 -39.25 -0.34 -3.04 16 28 H 0.10 1.15 7.83 -52.48 -0.41 0.74 16 29 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.10 0.83 8.06 -52.48 -0.42 0.40 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.41 2.27 8.82 -40.82 -0.36 1.91 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 42 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 43 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 44 H 0.03 0.70 7.20 -51.92 -0.37 0.32 16 45 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.14 2.58 6.22 -52.48 -0.33 2.26 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -33.78 385.23 -8.55 -42.33 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.58 Total: 1.07 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -2.69 Total: -19.05 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.72 Total: -33.32 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.13 Total: -14.21 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.78 -8.55 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355216979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.112 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds