Wall clock time and date at job start Fri Apr 10 2020 23:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99984 * 2 1 4 4 H 1.08998 * 109.46972 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47249 * 239.99237 * 3 2 1 6 6 C 1.53009 * 109.46801 * 65.00093 * 5 3 2 7 7 C 1.53002 * 109.46981 * 119.99282 * 3 2 1 8 8 C 1.50701 * 109.47329 * 294.99775 * 7 3 2 9 9 O 1.21283 * 119.99729 * 0.02562 * 8 7 3 10 10 N 1.34775 * 119.99767 * 180.02562 * 8 7 3 11 11 C 1.39925 * 119.99975 * 184.62116 * 10 8 7 12 12 C 1.38930 * 120.04278 * 144.92613 * 11 10 8 13 13 C 1.38121 * 120.04157 * 179.97438 * 12 11 10 14 14 C 1.38215 * 120.12258 * 359.76472 * 13 12 11 15 15 C 1.38769 * 120.08313 * 0.51214 * 14 13 12 16 16 O 1.35903 * 120.02227 * 179.74338 * 15 14 13 17 17 C 1.42898 * 116.99628 * 359.72586 * 16 15 14 18 18 C 1.53000 * 109.47100 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47173 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99849 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99492 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99237 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00392 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47299 * 89.99785 * 23 21 19 25 25 H 1.48499 * 109.47230 * 209.99713 * 23 21 19 26 26 H 1.48500 * 109.47024 * 330.00326 * 23 21 19 27 27 C 1.38627 * 119.95856 * 359.46855 * 15 14 13 28 28 H 1.08003 * 120.00185 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99965 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00185 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47190 * 184.99640 * 5 3 2 32 32 H 1.09000 * 109.47140 * 305.00500 * 5 3 2 33 33 H 1.08997 * 109.47090 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46918 * 300.00271 * 6 5 3 35 35 H 1.08994 * 109.47001 * 59.99882 * 6 5 3 36 36 H 1.08999 * 109.46990 * 174.99931 * 7 3 2 37 37 H 1.09000 * 109.47314 * 55.00452 * 7 3 2 38 38 H 0.97001 * 120.00459 * 4.61990 * 10 8 7 39 39 H 1.08002 * 119.97856 * 359.97438 * 12 11 10 40 40 H 1.07989 * 119.93869 * 180.02562 * 13 12 11 41 41 H 1.07997 * 119.96253 * 180.27805 * 14 13 12 42 42 H 1.08998 * 109.47190 * 300.00094 * 17 16 15 43 43 H 1.08999 * 109.47615 * 60.00174 * 17 16 15 44 44 H 1.09008 * 109.47021 * 300.00003 * 18 17 16 45 45 H 1.08999 * 109.47352 * 59.99825 * 18 17 16 46 46 H 0.97005 * 119.99942 * 180.02562 * 22 21 19 47 47 H 1.08007 * 120.06294 * 180.25276 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9433 1.3861 -1.2491 6 6 2.0566 1.4306 -2.4953 7 6 2.9430 1.3862 1.2494 8 6 2.0695 1.4302 2.4766 9 8 0.8624 1.3993 2.3632 10 7 2.6298 1.5040 3.7002 11 6 1.8245 1.4474 4.8430 12 6 2.2887 0.8165 5.9905 13 6 1.4939 0.7611 7.1187 14 6 0.2374 1.3368 7.1111 15 6 -0.2337 1.9633 5.9659 16 8 -1.4714 2.5244 5.9581 17 6 -2.2354 2.4270 7.1617 18 6 -3.5899 3.1102 6.9628 19 6 -4.3954 3.0080 8.2324 20 1 -3.9827 2.5056 9.0947 21 6 -5.6592 3.5560 8.2929 22 7 -6.3623 3.4663 9.4006 23 14 -6.3726 4.4256 6.8016 24 1 -7.1077 3.4459 5.9618 25 1 -7.3047 5.4916 7.2490 26 1 -5.2727 5.0306 6.0082 27 6 0.5613 2.0213 4.8317 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 3.5541 2.2878 -1.2055 32 1 3.5907 0.5104 -1.2950 33 1 2.6833 1.4879 -3.3853 34 1 1.4457 0.5290 -2.5389 35 1 1.4092 2.3062 -2.4495 36 1 3.5539 2.2879 1.2057 37 1 3.5905 0.5106 1.2954 38 1 3.5914 1.5963 3.7886 39 1 3.2717 0.3691 6.0003 40 1 1.8566 0.2706 8.0099 41 1 -0.3801 1.2959 7.9961 42 1 -2.3915 1.3770 7.4091 43 1 -1.6976 2.9155 7.9742 44 1 -3.4342 4.1604 6.7152 45 1 -4.1277 2.6213 6.1505 46 1 -7.2516 3.8515 9.4432 47 1 0.1979 2.5120 3.9408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355216979.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:33:49 Heat of formation + Delta-G solvation = -66.975155 kcal Electronic energy + Delta-G solvation = -25548.121820 eV Core-core repulsion = 21888.297839 eV Total energy + Delta-G solvation = -3659.823981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70766 -40.63439 -38.72774 -37.52090 -35.68063 -35.29643 -32.95732 -32.62452 -31.92060 -30.90273 -29.89077 -27.15272 -25.90206 -24.02084 -23.35018 -22.56216 -22.24555 -21.28091 -20.44770 -19.74961 -18.80404 -18.03862 -17.24253 -17.04666 -16.85942 -16.76565 -16.42581 -16.16613 -15.72122 -15.51424 -14.92736 -14.83573 -14.65715 -14.52838 -14.41655 -14.28228 -13.98098 -13.48759 -13.30096 -13.03164 -12.87910 -12.74613 -12.62120 -12.43429 -12.17377 -12.15226 -12.04764 -11.83061 -11.71180 -11.67863 -11.49408 -11.36293 -11.16529 -10.84875 -10.81146 -10.03544 -9.41451 -9.01353 -8.38140 -6.44443 0.25846 0.48157 1.32641 1.33540 1.46828 1.51755 1.67568 1.97833 2.29981 2.40978 2.82692 2.96474 3.73190 3.82760 3.88429 3.91256 4.15387 4.18040 4.18595 4.25870 4.35898 4.39356 4.42034 4.46641 4.57946 4.58494 4.62140 4.66841 4.76042 4.86943 5.01785 5.06072 5.06996 5.08653 5.19836 5.24927 5.28173 5.34467 5.39977 5.41207 5.45929 5.47572 5.53429 5.81801 5.93352 6.03848 6.13214 6.49077 6.51467 6.60370 7.20551 7.24135 8.77401 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.002629 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.048602 B =10646.198544 C =12316.438961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.048 4.048 4 H 0.055 0.945 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.121 4.121 8 C 0.498 3.502 9 O -0.551 6.551 10 N -0.661 5.661 11 C 0.180 3.820 12 C -0.175 4.175 13 C -0.057 4.057 14 C -0.239 4.239 15 C 0.122 3.878 16 O -0.341 6.341 17 C 0.088 3.912 18 C -0.007 4.007 19 C -0.535 4.535 20 H 0.045 0.955 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.255 1.255 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.432 0.568 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.127 0.873 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.022 0.978 46 H 0.271 0.729 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.454 -6.714 -19.842 36.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.162 4.162 3 C -0.067 4.067 4 H 0.074 0.926 5 C -0.145 4.145 6 C -0.213 4.213 7 C -0.160 4.160 8 C 0.287 3.713 9 O -0.427 6.427 10 N -0.309 5.309 11 C 0.084 3.916 12 C -0.195 4.195 13 C -0.075 4.075 14 C -0.258 4.258 15 C 0.076 3.924 16 O -0.255 6.255 17 C 0.013 3.987 18 C -0.045 4.045 19 C -0.573 4.573 20 H 0.064 0.936 21 C -0.183 4.183 22 N -0.579 5.579 23 Si 0.769 3.231 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.179 1.179 27 C -0.204 4.204 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.272 0.728 39 H 0.185 0.815 40 H 0.179 0.821 41 H 0.145 0.855 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 28.359 -6.592 -20.073 35.364 hybrid contribution -1.094 0.406 0.243 1.192 sum 27.265 -6.186 -19.831 34.276 Atomic orbital electron populations 1.23697 0.96986 1.00625 1.01320 1.22901 0.95474 0.98435 0.99407 1.20201 0.96711 0.95434 0.94357 0.92606 1.21501 0.97378 1.03535 0.92061 1.21791 1.00007 1.01266 0.98225 1.21786 0.97872 1.07570 0.88772 1.21803 0.89495 0.74466 0.85488 1.90797 1.17097 1.48162 1.86616 1.43488 1.11381 1.72677 1.03334 1.17458 0.90475 0.95507 0.88118 1.21135 1.03009 1.03337 0.92040 1.21115 0.91572 0.95709 0.99110 1.21508 1.00214 1.06173 0.97907 1.19253 0.84799 0.93472 0.94851 1.86042 1.26017 1.73895 1.39580 1.22684 0.91411 1.00429 0.84157 1.19455 0.91729 0.96660 0.96612 1.21076 1.00793 1.37384 0.98065 0.93644 1.25831 0.97047 0.96232 0.99150 1.70012 1.12377 1.46724 1.28746 0.85718 0.78851 0.79009 0.79500 1.19108 1.20021 1.17902 1.20384 0.95860 1.06802 0.97363 0.90666 0.89191 0.86363 0.90095 0.90088 0.91642 0.93434 0.93852 0.85274 0.85301 0.72798 0.81513 0.82142 0.85542 0.92407 0.91977 0.95599 0.96000 0.92015 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.36 13.22 67.78 0.90 -3.47 16 2 C -0.14 -2.54 6.76 25.65 0.17 -2.37 16 3 C -0.05 -0.66 1.82 -11.54 -0.02 -0.68 16 4 H 0.06 1.09 7.60 -2.39 -0.02 1.07 16 5 C -0.11 -0.92 5.39 30.60 0.16 -0.75 16 6 C -0.16 -1.77 9.73 71.99 0.70 -1.07 16 7 C -0.12 -1.10 5.17 29.85 0.15 -0.95 16 8 C 0.50 9.60 7.42 87.66 0.65 10.25 16 9 O -0.55 -16.77 11.60 -3.04 -0.04 -16.80 16 10 N -0.66 -10.55 5.34 -303.56 -1.62 -12.17 16 11 C 0.18 4.35 6.30 38.14 0.24 4.59 16 12 C -0.18 -3.37 9.96 22.41 0.22 -3.14 16 13 C -0.06 -1.27 10.03 22.24 0.22 -1.05 16 14 C -0.24 -7.45 9.04 22.39 0.20 -7.25 16 15 C 0.12 4.57 6.68 22.49 0.15 4.72 16 16 O -0.34 -15.00 10.13 -92.46 -0.94 -15.94 16 17 C 0.09 3.91 4.68 71.98 0.34 4.24 16 18 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 19 C -0.54 -31.72 9.66 25.60 0.25 -31.47 16 20 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 21 C 0.02 0.95 5.47 84.66 0.46 1.41 16 22 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 23 Si 0.95 45.98 27.47 68.60 1.88 47.87 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 27 C -0.18 -6.23 8.64 22.49 0.19 -6.04 16 28 H 0.07 2.02 7.83 -2.91 -0.02 2.00 16 29 H 0.09 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.12 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.05 0.64 7.38 -2.39 -0.02 0.62 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.43 2.69 8.82 -92.71 -0.82 1.88 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.16 2.46 8.06 -2.92 -0.02 2.44 16 41 H 0.13 3.99 6.29 -2.91 -0.02 3.97 16 42 H 0.06 2.50 7.67 -2.39 -0.02 2.49 16 43 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 44 H 0.03 1.32 7.20 -2.38 -0.02 1.31 16 45 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 46 H 0.27 15.78 8.31 -92.70 -0.77 15.00 16 47 H 0.12 4.57 6.22 -2.91 -0.02 4.55 16 Total: -1.00 -79.01 385.23 4.80 -74.21 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.08 Total: 14.78 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 5.13 Total: -33.26 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.32 Total: -70.86 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.97 Total: -32.74 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.87 kcal Total: -79.01 4.80 -74.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355216979.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.235 kcal (2) G-P(sol) polarization free energy of solvation -79.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds