Wall clock time and date at job start Fri Apr 10 2020 23:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46872 * 2 1 4 4 H 1.08998 * 109.47475 * 53.67628 * 3 2 1 5 5 N 1.46902 * 109.47074 * 173.67237 * 3 2 1 6 6 C 1.46904 * 110.99937 * 272.30440 * 5 3 2 7 7 C 1.50703 * 109.46774 * 184.63035 * 6 5 3 8 8 C 1.38634 * 119.74822 * 269.72508 * 7 6 5 9 9 C 1.37620 * 120.24620 * 179.72895 * 8 7 6 10 10 C 1.40717 * 119.74087 * 0.56433 * 9 8 7 11 11 C 1.41395 * 120.24231 * 179.68468 * 10 9 8 12 12 H 1.07994 * 120.00424 * 210.74250 * 11 10 9 13 13 C 1.39947 * 119.99846 * 30.74296 * 11 10 9 14 14 N 1.30830 * 120.00201 * 8.42730 * 13 11 10 15 15 Si 1.86807 * 120.00112 * 188.42728 * 13 11 10 16 16 H 1.48498 * 109.46872 * 59.99735 * 15 13 11 17 17 H 1.48499 * 109.47165 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46905 * 300.00371 * 15 13 11 19 19 C 1.40713 * 119.51485 * 359.70961 * 10 9 8 20 20 C 1.37618 * 119.74399 * 359.97438 * 19 10 9 21 21 C 1.53002 * 109.47028 * 293.67088 * 3 2 1 22 22 C 1.50697 * 112.84848 * 305.99126 * 21 3 2 23 23 O 1.20820 * 120.00494 * 351.94246 * 22 21 3 24 24 O 1.34234 * 119.99827 * 171.94056 * 22 21 3 25 25 C 1.53779 * 113.61576 * 77.19131 * 21 3 2 26 26 C 1.53956 * 87.01762 * 89.22800 * 25 21 3 27 27 C 1.53774 * 87.11391 * 25.36401 * 26 25 21 28 28 H 1.09005 * 109.46963 * 70.85891 * 1 2 3 29 29 H 1.08996 * 109.47478 * 190.86205 * 1 2 3 30 30 H 1.09003 * 109.47448 * 310.86547 * 1 2 3 31 31 H 1.08994 * 109.47251 * 239.99986 * 2 1 3 32 32 H 1.09001 * 109.47069 * 119.99578 * 2 1 3 33 33 H 1.00899 * 111.00194 * 148.34484 * 5 3 2 34 34 H 1.09001 * 109.46890 * 304.63052 * 6 5 3 35 35 H 1.08997 * 109.46798 * 64.62927 * 6 5 3 36 36 H 1.07995 * 119.87512 * 359.97438 * 8 7 6 37 37 H 1.07993 * 120.12920 * 180.27815 * 9 8 7 38 38 H 0.96994 * 119.99824 * 180.02562 * 14 13 11 39 39 H 1.08003 * 120.12808 * 179.97438 * 19 10 9 40 40 H 1.07995 * 119.87279 * 179.97438 * 20 19 10 41 41 H 0.96703 * 117.00237 * 179.97438 * 24 22 21 42 42 H 1.08997 * 113.61484 * 203.74373 * 25 21 3 43 43 H 1.09006 * 113.61150 * 334.65303 * 25 21 3 44 44 H 1.09006 * 113.53432 * 270.81008 * 26 25 21 45 45 H 1.09004 * 113.66627 * 139.93744 * 26 25 21 46 46 H 1.09000 * 113.61629 * 220.08960 * 27 26 25 47 47 H 1.08995 * 113.61696 * 89.18320 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5872 1.9880 0.8279 5 7 3.5010 1.4454 0.1526 6 6 3.8821 1.4417 1.5714 7 6 5.3799 1.5594 1.6895 8 6 6.1597 0.4136 1.7200 9 6 7.5288 0.5094 1.8219 10 6 8.1355 1.7761 1.9073 11 6 9.5407 1.8867 2.0191 12 1 9.9761 2.7153 2.5576 13 6 10.3673 0.9221 1.4319 14 7 9.8540 0.0130 0.6434 15 14 12.2038 0.9325 1.7738 16 1 12.4369 0.7658 3.2309 17 1 12.8506 -0.1838 1.0386 18 1 12.7836 2.2237 1.3244 19 6 7.3336 2.9321 1.8811 20 6 5.9669 2.8126 1.7720 21 6 1.6639 2.1164 -1.3212 22 6 2.1309 1.3421 -2.5267 23 8 2.8564 0.3861 -2.3869 24 8 1.7408 1.7144 -3.7559 25 6 0.1885 2.5434 -1.3968 26 6 0.6281 3.8834 -0.7794 27 6 2.0202 3.6115 -1.3734 28 1 -0.3633 0.3370 -0.9709 29 1 -0.3634 -1.0092 0.1936 30 1 -0.3634 0.6724 0.7772 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9136 2.2292 -0.3306 34 1 3.4104 2.2846 2.0765 35 1 3.5532 0.5109 2.0334 36 1 5.6913 -0.5576 1.6595 37 1 8.1348 -0.3843 1.8410 38 1 10.4269 -0.6557 0.2367 39 1 7.7888 3.9093 1.9464 40 1 5.3494 3.6984 1.7521 41 1 2.0664 1.1873 -4.4984 42 1 -0.1879 2.6348 -2.4157 43 1 -0.4687 1.9593 -0.7524 44 1 0.6115 3.8867 0.3106 45 1 0.1296 4.7499 -1.2139 46 1 2.8396 3.8885 -0.7102 47 1 2.1455 3.9953 -2.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595299827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:38 Heat of formation + Delta-G solvation = -71.430545 kcal Electronic energy + Delta-G solvation = -26998.467635 eV Core-core repulsion = 23338.450454 eV Total energy + Delta-G solvation = -3660.017181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.16520 -39.78621 -39.36241 -37.30190 -36.54732 -35.39354 -33.82504 -31.75923 -31.12482 -29.10640 -27.68718 -26.56164 -25.79651 -24.49913 -23.16587 -22.84032 -21.84290 -21.59673 -20.05403 -19.19579 -18.56899 -17.76251 -17.24459 -17.06020 -16.58587 -15.91378 -15.86938 -15.75119 -15.59122 -15.15693 -14.92745 -14.47894 -14.36311 -14.05597 -13.82848 -13.64491 -13.48614 -13.24257 -13.01027 -12.91632 -12.81365 -12.73271 -12.59246 -12.48356 -12.43232 -12.28961 -12.20426 -11.97860 -11.72163 -11.46714 -11.23748 -11.19082 -11.03385 -10.83358 -10.79643 -9.34232 -9.26432 -9.02598 -8.55406 -6.36055 0.95837 1.14965 1.31060 1.36653 1.49098 1.50833 2.16904 2.21713 2.73565 3.24121 3.46269 3.49756 3.69169 3.80949 3.85164 4.22241 4.26639 4.32706 4.40041 4.41431 4.51354 4.55502 4.62126 4.64534 4.68084 4.80055 4.85697 4.86685 4.94391 5.02294 5.07361 5.10166 5.14316 5.17913 5.25581 5.33291 5.38873 5.45496 5.47129 5.48959 5.73314 5.79252 5.94440 6.11968 6.20810 6.33706 6.40768 6.54283 6.72879 6.96326 7.05158 7.13811 8.40570 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.002930 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.405911 B = 9554.863025 C = 9708.865109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.125 3.875 4 H 0.072 0.928 5 N -0.685 5.685 6 C 0.134 3.866 7 C -0.192 4.192 8 C -0.092 4.092 9 C -0.181 4.181 10 C 0.078 3.922 11 C -0.506 4.506 12 H 0.075 0.925 13 C 0.028 3.972 14 N -0.841 5.841 15 Si 0.986 3.014 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.259 1.259 19 C -0.234 4.234 20 C -0.088 4.088 21 C -0.086 4.086 22 C 0.483 3.517 23 O -0.525 6.525 24 O -0.514 6.514 25 C -0.123 4.123 26 C -0.126 4.126 27 C -0.129 4.129 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.334 0.666 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.284 0.716 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.422 0.578 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.982 5.487 -5.156 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.016 3.984 4 H 0.090 0.910 5 N -0.317 5.317 6 C 0.006 3.994 7 C -0.193 4.193 8 C -0.111 4.111 9 C -0.201 4.201 10 C 0.076 3.924 11 C -0.536 4.536 12 H 0.093 0.907 13 C -0.184 4.184 14 N -0.468 5.468 15 Si 0.807 3.193 16 H -0.184 1.184 17 H -0.195 1.195 18 H -0.184 1.184 19 C -0.254 4.254 20 C -0.107 4.107 21 C -0.088 4.088 22 C 0.326 3.674 23 O -0.413 6.413 24 O -0.328 6.328 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.167 4.167 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.283 0.717 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.810 4.573 -5.009 21.887 hybrid contribution 1.588 -0.024 -0.381 1.633 sum -19.222 4.549 -5.390 20.475 Atomic orbital electron populations 1.22031 0.93995 1.02316 1.02531 1.21720 0.96373 0.96027 1.02336 1.21267 0.87790 0.96031 0.93318 0.90997 1.60483 1.08638 1.50338 1.12273 1.20535 0.90594 1.00000 0.88307 1.19406 0.95017 0.92506 1.12377 1.20744 0.93483 0.97277 0.99568 1.21297 0.93681 0.97671 1.07426 1.17970 0.93889 0.91756 0.88819 1.19805 0.91851 1.09482 1.32498 0.90698 1.26777 1.06098 0.93219 0.92309 1.69884 1.39621 1.13939 1.23336 0.85202 0.75653 0.78979 0.79506 1.18366 1.19461 1.18357 1.21237 0.94332 0.96929 1.12863 1.20703 0.93999 0.96337 0.99613 1.22162 1.01537 0.95200 0.89868 1.23472 0.76795 0.82292 0.84843 1.90759 1.34957 1.28913 1.86658 1.84433 1.71010 1.60199 1.17129 1.23379 0.91560 0.97204 1.03873 1.22857 0.94311 0.98071 1.01054 1.23043 0.99569 0.90938 1.03105 0.91457 0.92511 0.91042 0.92120 0.93179 0.84662 0.94008 0.91792 0.88706 0.88648 0.90581 0.88337 0.86241 0.71737 0.87930 0.87908 0.89229 0.88942 0.91503 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.29 71.98 0.60 -1.99 16 2 C -0.13 -3.20 5.42 30.60 0.17 -3.03 16 3 C 0.13 3.02 1.49 44.92 0.07 3.09 16 4 H 0.07 1.49 6.80 -2.39 -0.02 1.48 16 5 N -0.69 -22.11 5.64 -495.55 -2.79 -24.90 16 6 C 0.13 4.50 5.66 85.56 0.48 4.98 16 7 C -0.19 -8.27 5.37 -19.67 -0.11 -8.38 16 8 C -0.09 -4.55 9.67 22.22 0.21 -4.34 16 9 C -0.18 -10.17 8.65 22.73 0.20 -9.97 16 10 C 0.08 4.40 5.54 -21.29 -0.12 4.28 16 11 C -0.51 -28.60 9.06 23.46 0.21 -28.39 16 12 H 0.07 4.04 7.86 -2.91 -0.02 4.02 16 13 C 0.03 1.52 5.28 85.26 0.45 1.97 16 14 N -0.84 -47.15 10.86 21.83 0.24 -46.92 16 15 Si 0.99 40.36 29.57 68.60 2.03 42.39 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 C -0.23 -11.75 9.80 22.73 0.22 -11.53 16 20 C -0.09 -3.82 9.67 22.22 0.21 -3.60 16 21 C -0.09 -1.75 0.41 -52.40 -0.02 -1.77 16 22 C 0.48 12.06 7.03 71.23 0.50 12.56 16 23 O -0.52 -17.94 14.31 21.98 0.31 -17.62 16 24 O -0.51 -9.25 12.69 -51.46 -0.65 -9.90 16 25 C -0.12 -1.63 6.14 31.18 0.19 -1.44 16 26 C -0.13 -1.53 7.74 31.18 0.24 -1.29 16 27 C -0.13 -2.27 6.84 31.12 0.21 -2.05 16 28 H 0.07 1.02 5.82 -2.38 -0.01 1.01 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.98 7.68 -2.39 -0.02 0.96 16 31 H 0.06 1.90 5.46 -2.39 -0.01 1.89 16 32 H 0.05 1.39 7.60 -2.39 -0.02 1.37 16 33 H 0.33 11.17 6.87 -89.69 -0.62 10.55 16 34 H 0.04 1.22 7.88 -2.39 -0.02 1.20 16 35 H 0.06 2.15 7.57 -2.39 -0.02 2.13 16 36 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.10 5.68 6.29 -2.91 -0.02 5.66 16 38 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 39 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 41 H 0.42 4.72 9.10 -74.06 -0.67 4.05 16 42 H 0.10 1.25 7.60 -2.39 -0.02 1.23 16 43 H 0.10 1.17 4.68 -2.38 -0.01 1.16 16 44 H 0.09 1.03 7.62 -2.38 -0.02 1.01 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 1.33 7.07 -2.39 -0.02 1.32 16 47 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -69.83 369.09 2.57 -67.26 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -0.29 Total: 40.60 kcal Atomic # 6 Polarization: -54.63 SS G_CDS: 3.73 Total: -50.91 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -2.56 Total: -71.82 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.34 Total: -27.52 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -69.83 2.57 -67.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595299827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal (2) G-P(sol) polarization free energy of solvation -69.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds