Wall clock time and date at job start Fri Apr 10 2020 23:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47460 * 2 1 4 4 N 1.46499 * 109.46956 * 180.02562 * 3 2 1 5 5 C 1.36744 * 119.99800 * 263.15029 * 4 3 2 6 6 H 1.07999 * 119.99913 * 142.54868 * 5 4 3 7 7 C 1.39091 * 120.00626 * 322.55337 * 5 4 3 8 8 N 1.31340 * 120.00473 * 163.66903 * 7 5 4 9 9 Si 1.86802 * 119.99519 * 343.67097 * 7 5 4 10 10 H 1.48495 * 109.47222 * 92.28625 * 9 7 5 11 11 H 1.48506 * 109.47176 * 212.28633 * 9 7 5 12 12 H 1.48501 * 109.47399 * 332.28419 * 9 7 5 13 13 C 1.34775 * 119.99801 * 83.16020 * 4 3 2 14 14 O 1.21780 * 119.99608 * 179.97438 * 13 4 3 15 15 C 1.41806 * 120.00364 * 359.97438 * 13 4 3 16 16 C 1.35130 * 119.99788 * 187.35239 * 15 13 4 17 17 C 1.46945 * 120.00270 * 11.82420 * 16 15 13 18 18 C 1.40001 * 120.11576 * 45.88838 * 17 16 15 19 19 C 1.37659 * 119.87995 * 180.02562 * 18 17 16 20 20 C 1.39027 * 120.11720 * 0.02562 * 19 18 17 21 21 O 1.35747 * 119.88390 * 179.97438 * 20 19 18 22 22 C 1.42903 * 116.99564 * 356.75438 * 21 20 19 23 23 C 1.52998 * 109.47296 * 82.82789 * 22 21 20 24 24 C 1.53004 * 109.46538 * 202.82586 * 22 21 20 25 25 C 1.39031 * 120.23580 * 0.23762 * 20 19 18 26 26 C 1.37656 * 120.11208 * 359.48397 * 25 20 19 27 27 H 1.08999 * 109.47329 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47055 * 300.00340 * 1 2 3 29 29 H 1.08998 * 109.47074 * 59.99480 * 1 2 3 30 30 H 1.09004 * 109.46804 * 240.00087 * 2 1 3 31 31 H 1.08998 * 109.47074 * 120.00520 * 2 1 3 32 32 H 1.08992 * 109.46955 * 59.99854 * 3 2 1 33 33 H 1.08997 * 109.46676 * 300.00483 * 3 2 1 34 34 H 0.97000 * 120.00122 * 179.97438 * 8 7 5 35 35 H 1.07996 * 119.99480 * 7.35678 * 15 13 4 36 36 H 1.08005 * 119.99460 * 191.82084 * 16 15 13 37 37 H 1.07999 * 120.06072 * 0.04318 * 18 17 16 38 38 H 1.07999 * 119.94158 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47195 * 322.82645 * 22 21 20 40 40 H 1.08994 * 109.47165 * 300.00153 * 23 22 21 41 41 H 1.09007 * 109.46715 * 59.99616 * 23 22 21 42 42 H 1.08994 * 109.47363 * 179.97438 * 23 22 21 43 43 H 1.08994 * 109.47336 * 60.00510 * 24 22 21 44 44 H 1.09004 * 109.46610 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47426 * 299.99917 * 24 22 21 46 46 H 1.07998 * 119.93975 * 179.74117 * 25 20 19 47 47 H 1.08002 * 120.05725 * 180.26080 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1892 1.5833 1.1749 6 1 5.1023 1.0301 1.3380 7 6 3.7093 2.4392 2.1607 8 7 4.1625 2.3450 3.3899 9 14 2.4202 3.7228 1.7364 10 1 1.0662 3.1638 1.9799 11 1 2.6198 4.9245 2.5858 12 1 2.5498 4.1006 0.3061 13 6 4.1784 1.3034 -1.1598 14 8 5.3962 1.3038 -1.1604 15 6 3.4689 1.1569 -2.3788 16 6 4.1358 0.8695 -3.5184 17 6 5.5442 0.4542 -3.4607 18 6 5.9558 -0.5059 -2.5286 19 6 7.2764 -0.8910 -2.4784 20 6 8.2009 -0.3280 -3.3509 21 8 9.5021 -0.7109 -3.2970 22 6 9.8626 -1.6415 -2.2741 23 6 9.5380 -3.0623 -2.7398 24 6 11.3613 -1.5287 -1.9874 25 6 7.7985 0.6298 -4.2748 26 6 6.4792 1.0178 -4.3372 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8899 34 1 3.8280 2.9421 4.0772 35 1 2.3955 1.2750 -2.3964 36 1 3.6336 0.9451 -4.4716 37 1 5.2385 -0.9438 -1.8503 38 1 7.5950 -1.6319 -1.7601 39 1 9.3013 -1.4194 -1.3666 40 1 8.4704 -3.1426 -2.9442 41 1 10.0994 -3.2843 -3.6474 42 1 9.8133 -3.7721 -1.9599 43 1 11.5926 -0.5166 -1.6556 44 1 11.6364 -2.2388 -1.2075 45 1 11.9227 -1.7508 -2.8949 46 1 8.5214 1.0671 -4.9475 47 1 6.1668 1.7589 -5.0581 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491212447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:34:15 Heat of formation + Delta-G solvation = -30.550787 kcal Electronic energy + Delta-G solvation = -26975.749724 eV Core-core repulsion = 23317.505222 eV Total energy + Delta-G solvation = -3658.244502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.38046 -40.77521 -38.75179 -37.18826 -34.95661 -34.46788 -33.62859 -33.28577 -31.85633 -29.99791 -28.22725 -27.64615 -26.94355 -24.46461 -24.19983 -22.80965 -22.47118 -21.60454 -19.63350 -19.25740 -18.91929 -18.36099 -17.51165 -16.87433 -16.45762 -16.32318 -15.78931 -15.67916 -15.40284 -15.12692 -14.97013 -14.60795 -14.54659 -14.41219 -14.21823 -13.92995 -13.91052 -13.58301 -13.33691 -13.23408 -13.15167 -13.05422 -12.74937 -12.56112 -12.49556 -12.27272 -12.13822 -12.09100 -11.84291 -11.69045 -11.55733 -11.47404 -10.99533 -10.38592 -10.29125 -9.87139 -9.52375 -8.56058 -8.51499 -6.11898 -0.07052 0.57076 1.01111 1.16272 1.31444 1.40131 2.14887 2.26254 2.55242 2.85310 2.95771 3.09717 3.78536 3.88500 3.91927 3.94919 3.98542 4.00681 4.13463 4.17649 4.20467 4.39062 4.44598 4.48199 4.56573 4.59244 4.65504 4.70172 4.73824 4.77946 4.82878 4.94841 4.99171 5.12154 5.14177 5.16083 5.19489 5.22314 5.28483 5.30073 5.43746 5.48588 5.54995 5.61896 5.82371 5.92960 6.04467 6.51999 6.62862 6.98478 7.34306 7.98613 8.65951 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003717 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.097585 B = 7530.740144 C = 8235.670173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.080 3.920 4 N -0.473 5.473 5 C -0.318 4.318 6 H 0.041 0.959 7 C 0.005 3.995 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.238 1.238 11 H -0.292 1.292 12 H -0.257 1.257 13 C 0.479 3.521 14 O -0.598 6.598 15 C -0.220 4.220 16 C -0.018 4.018 17 C -0.110 4.110 18 C -0.012 4.012 19 C -0.231 4.231 20 C 0.124 3.876 21 O -0.322 6.322 22 C 0.064 3.936 23 C -0.173 4.173 24 C -0.142 4.142 25 C -0.177 4.177 26 C -0.065 4.065 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.279 0.721 35 H 0.157 0.843 36 H 0.178 0.822 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.144 0.856 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -6.939 -16.159 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.042 4.042 4 N -0.194 5.194 5 C -0.447 4.447 6 H 0.059 0.941 7 C -0.196 4.196 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.163 1.163 11 H -0.220 1.220 12 H -0.181 1.181 13 C 0.273 3.727 14 O -0.485 6.485 15 C -0.240 4.240 16 C -0.039 4.039 17 C -0.110 4.110 18 C -0.031 4.031 19 C -0.250 4.250 20 C 0.079 3.921 21 O -0.237 6.237 22 C 0.008 3.992 23 C -0.230 4.230 24 C -0.199 4.199 25 C -0.196 4.196 26 C -0.083 4.083 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.174 0.826 36 H 0.196 0.804 37 H 0.111 0.889 38 H 0.140 0.860 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.162 0.838 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.381 -6.831 -16.019 17.419 hybrid contribution -0.128 0.436 1.385 1.458 sum -0.509 -6.394 -14.634 15.978 Atomic orbital electron populations 1.21708 0.92810 1.02928 1.02628 1.21856 0.97727 0.95433 1.01887 1.22218 0.80674 0.98979 1.02310 1.43903 1.05394 1.64552 1.05529 1.18612 1.08759 1.25069 0.92260 0.94073 1.26234 1.00535 0.98575 0.94244 1.69801 1.45480 1.38348 1.01906 0.85796 0.79347 0.77916 0.79214 1.16315 1.21986 1.18063 1.18014 0.87942 0.81795 0.84971 1.90751 1.15358 1.55339 1.87021 1.22361 1.01449 1.07809 0.92426 1.22666 0.91557 0.90971 0.98673 1.19057 0.95162 0.98921 0.97845 1.20818 0.94919 0.94481 0.92875 1.21122 0.94317 1.06350 1.03205 1.19244 0.83005 0.94489 0.95410 1.86004 1.23250 1.60750 1.53664 1.22674 0.98243 0.88929 0.89331 1.22335 1.02160 0.95059 1.03421 1.21849 0.91399 1.03203 1.03442 1.20474 0.97195 1.00133 1.01792 1.21273 0.91410 0.97980 0.97641 0.91059 0.93244 0.90354 0.90955 0.94146 0.92357 0.88384 0.91187 0.82569 0.80438 0.88916 0.85975 0.92686 0.93036 0.90675 0.89169 0.92567 0.88478 0.90541 0.83816 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.91 71.98 0.71 -2.58 16 2 C -0.13 -4.17 6.11 30.59 0.19 -3.98 16 3 C 0.08 3.05 3.52 86.38 0.30 3.35 16 4 N -0.47 -23.19 2.22 -645.44 -1.43 -24.63 16 5 C -0.32 -19.09 9.41 84.13 0.79 -18.29 16 6 H 0.04 2.91 7.90 -2.91 -0.02 2.89 16 7 C 0.01 0.30 5.37 84.97 0.46 0.76 16 8 N -0.92 -56.05 13.95 21.69 0.30 -55.74 16 9 Si 0.95 42.92 24.73 68.60 1.70 44.62 16 10 H -0.24 -9.30 6.62 99.48 0.66 -8.64 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.15 7.09 99.48 0.71 -10.45 16 13 C 0.48 22.38 6.47 85.12 0.55 22.93 16 14 O -0.60 -32.84 12.14 -4.60 -0.06 -32.89 16 15 C -0.22 -7.31 8.33 22.44 0.19 -7.12 16 16 C -0.02 -0.52 9.78 23.84 0.23 -0.29 16 17 C -0.11 -3.73 4.37 -20.14 -0.09 -3.82 16 18 C -0.01 -0.48 6.75 22.56 0.15 -0.33 16 19 C -0.23 -8.58 8.14 22.32 0.18 -8.40 16 20 C 0.12 4.27 6.59 22.65 0.15 4.42 16 21 O -0.32 -10.10 9.80 -90.71 -0.89 -10.99 16 22 C 0.06 1.65 2.86 30.60 0.09 1.74 16 23 C -0.17 -3.61 9.14 71.98 0.66 -2.96 16 24 C -0.14 -2.81 9.56 71.98 0.69 -2.12 16 25 C -0.18 -5.53 9.97 22.32 0.22 -5.31 16 26 C -0.07 -1.94 9.79 22.56 0.22 -1.72 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 2.14 7.49 -2.38 -0.02 2.12 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.06 2.37 3.08 -2.39 -0.01 2.36 16 33 H 0.10 2.99 6.39 -2.39 -0.02 2.97 16 34 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.16 3.97 6.13 -2.91 -0.02 3.95 16 36 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.09 3.90 7.28 -2.91 -0.02 3.88 16 38 H 0.12 4.31 5.39 -2.91 -0.02 4.29 16 39 H 0.06 1.63 6.32 -2.39 -0.02 1.62 16 40 H 0.05 1.21 6.81 -2.39 -0.02 1.20 16 41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 47 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -78.55 372.30 6.22 -72.32 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.91 Total: 31.02 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.70 Total: -23.72 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.13 Total: -80.37 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.94 Total: -43.88 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.70 Total: 44.62 kcal Total: -78.55 6.22 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491212447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.774 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds