Wall clock time and date at job start Fri Apr 10 2020 23:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 N 1.46501 * 109.47144 * 120.00012 * 2 1 3 5 5 C 1.46497 * 120.00292 * 300.00040 * 4 2 1 6 6 C 1.50696 * 109.47033 * 269.99987 * 5 4 2 7 7 H 1.08002 * 119.99882 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99633 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00369 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99794 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47011 * 119.99844 * 10 8 6 13 13 H 1.48491 * 109.47205 * 239.99997 * 10 8 6 14 14 C 1.34783 * 120.00004 * 119.99772 * 4 2 1 15 15 O 1.21277 * 120.00116 * 180.02562 * 14 4 2 16 16 C 1.50697 * 119.99922 * 0.02562 * 14 4 2 17 17 O 1.42901 * 109.47516 * 179.97438 * 16 14 4 18 18 C 1.42893 * 114.00493 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.32564 * 120.00601 * 135.99695 * 19 18 17 21 21 C 1.47813 * 119.99292 * 8.07111 * 20 19 18 22 22 C 1.39532 * 120.14779 * 34.97599 * 21 20 19 23 23 C 1.37970 * 119.86028 * 179.97438 * 22 21 20 24 24 C 1.38347 * 120.14274 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.28318 * 0.02562 * 24 23 22 26 26 C 1.37969 * 120.14252 * 0.02562 * 25 24 23 27 27 H 1.08994 * 109.47088 * 299.99610 * 1 2 3 28 28 H 1.09000 * 109.47027 * 59.99693 * 1 2 3 29 29 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46966 * 239.99971 * 2 1 3 31 31 H 1.09003 * 109.47029 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47359 * 300.00104 * 3 2 1 33 33 H 1.09005 * 109.47163 * 60.00092 * 3 2 1 34 34 H 1.09009 * 109.46688 * 30.00069 * 5 4 2 35 35 H 1.09001 * 109.47411 * 149.99190 * 5 4 2 36 36 H 0.96997 * 119.99587 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47351 * 59.99810 * 16 14 4 38 38 H 1.09001 * 109.47336 * 300.00288 * 16 14 4 39 39 H 1.09008 * 109.47093 * 60.00277 * 18 17 16 40 40 H 1.08996 * 109.47074 * 300.00215 * 18 17 16 41 41 H 1.08008 * 119.99961 * 316.00291 * 19 18 17 42 42 H 1.07991 * 120.00643 * 188.06451 * 20 19 18 43 43 H 1.08007 * 120.07092 * 359.96221 * 22 21 20 44 44 H 1.08004 * 119.92934 * 180.02562 * 23 22 21 45 45 H 1.07996 * 119.85770 * 179.74341 * 24 23 22 46 46 H 1.07993 * 119.92693 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.07152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5811 1.4106 4.2140 9 7 1.5580 1.1262 4.9898 10 14 3.8691 2.6396 4.7799 11 1 4.9105 2.7836 3.7311 12 1 3.2251 3.9558 5.0212 13 1 4.4953 2.1570 6.0369 14 6 2.7932 -1.7865 1.0725 15 8 3.1971 -2.3585 2.0627 16 6 3.1577 -2.3010 -0.2962 17 8 3.9796 -3.4626 -0.1652 18 6 4.3828 -4.0330 -1.4118 19 6 5.2411 -5.2449 -1.1555 20 6 5.0487 -6.3536 -1.8562 21 6 4.1193 -6.3495 -3.0056 22 6 4.0062 -5.2159 -3.8112 23 6 3.1372 -5.2187 -4.8829 24 6 2.3793 -6.3425 -5.1598 25 6 2.4868 -7.4697 -4.3649 26 6 3.3513 -7.4794 -3.2897 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.6904 0.2973 2.4843 35 1 1.6237 -1.0227 3.2291 36 1 1.4720 1.5549 5.8557 37 1 3.7029 -1.5302 -0.8409 38 1 2.2495 -2.5577 -0.8416 39 1 4.9530 -3.2981 -1.9801 40 1 3.4999 -4.3261 -1.9797 41 1 6.0131 -5.2101 -0.4009 42 1 5.5710 -7.2598 -1.5874 43 1 4.5975 -4.3380 -3.5962 44 1 3.0491 -4.3420 -5.5074 45 1 1.6975 -6.3382 -5.9973 46 1 1.8922 -8.3436 -4.5861 47 1 3.4346 -8.3601 -2.6702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531655545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:15 Heat of formation + Delta-G solvation = -33.734348 kcal Electronic energy + Delta-G solvation = -26061.899237 eV Core-core repulsion = 22403.516686 eV Total energy + Delta-G solvation = -3658.382551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -39.75213 -39.25577 -37.55208 -35.86630 -34.76807 -32.81900 -31.33072 -30.84066 -30.16843 -28.83090 -26.91137 -26.68460 -25.60690 -22.80651 -22.71766 -22.45124 -21.29551 -19.60073 -18.16543 -17.40588 -16.54081 -16.46218 -16.25147 -16.22679 -15.73097 -15.10983 -14.89575 -14.55855 -14.39116 -13.87767 -13.67049 -13.61210 -13.47551 -13.17539 -12.85211 -12.66064 -12.42965 -12.31419 -11.90818 -11.77421 -11.63543 -11.54974 -11.33588 -11.17803 -10.93547 -10.89317 -10.82449 -10.57144 -10.37760 -10.23250 -10.00049 -9.57675 -9.50431 -9.13011 -8.80953 -8.48600 -8.39900 -7.64098 -6.01080 -4.04168 0.74097 1.12932 2.08641 3.31306 3.35525 3.39865 3.44631 3.45445 3.60812 4.25502 4.47429 4.51902 4.60237 4.69368 4.83106 4.88035 5.09736 5.12815 5.17217 5.17660 5.22258 5.27757 5.32413 5.34150 5.42993 5.56114 5.58982 5.63690 5.68113 5.79118 5.98875 6.07614 6.12034 6.14195 6.23588 6.24322 6.35702 6.35843 6.51179 6.58601 6.71964 6.94414 7.03117 7.24707 7.49730 7.59767 7.96196 8.27845 8.43771 8.94711 9.12838 9.59870 11.07184 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.002640 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.995549 B =10604.351843 C =11280.235967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.520 6.520 16 C 0.046 3.954 17 O -0.358 6.358 18 C 0.076 3.924 19 C -0.124 4.124 20 C -0.124 4.124 21 C -0.056 4.056 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.108 4.108 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -11.680 -22.331 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.327 5.327 5 C 0.128 3.872 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.291 3.709 15 O -0.395 6.395 16 C -0.035 4.035 17 O -0.276 6.276 18 C 0.000 4.000 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.056 4.056 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.490 -12.016 -21.424 24.609 hybrid contribution 0.607 0.879 0.095 1.072 sum 2.096 -11.137 -21.329 24.153 Atomic orbital electron populations 1.22163 0.95450 1.01860 1.02558 1.21008 0.94283 0.94262 0.87664 1.22148 1.01387 0.95588 1.02410 1.48296 1.49344 1.26218 1.08819 1.19259 0.95926 0.94997 0.76990 1.21478 1.08849 1.23237 1.02111 0.92309 1.24932 0.95763 0.97182 0.96345 1.69943 1.29504 1.43345 1.10695 0.86487 0.81656 0.80745 0.78806 1.19829 1.21064 1.20950 1.19886 0.79897 0.81367 0.89755 1.90696 1.52176 1.57479 1.39170 1.22360 0.95069 0.88618 0.97404 1.88047 1.68984 1.42666 1.27904 1.21998 0.97401 0.93710 0.86892 1.23100 0.98127 0.93288 0.99635 1.21639 0.98959 0.97860 0.95693 1.19143 0.96901 0.94054 0.95547 1.21524 0.99175 0.97706 0.95043 1.21112 0.96807 0.98502 0.97464 1.21220 0.99476 0.93492 0.99792 1.21108 0.98894 0.98449 0.95421 1.21292 0.96166 0.97879 0.97297 0.91147 0.92228 0.92889 0.91138 0.92716 0.93217 0.89911 0.94606 0.94014 0.92856 0.90986 0.91155 0.92351 0.91522 0.85428 0.85422 0.85540 0.85862 0.86117 0.85991 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.17 37.16 0.34 -2.00 16 2 C 0.13 2.13 3.17 -67.93 -0.22 1.92 16 3 C -0.16 -2.54 8.47 37.15 0.31 -2.23 16 4 N -0.59 -12.60 2.39 -167.47 -0.40 -13.00 16 5 C 0.25 6.42 4.59 -5.20 -0.02 6.39 16 6 C -0.52 -14.47 7.83 -34.44 -0.27 -14.74 16 7 H 0.06 1.65 7.63 -52.49 -0.40 1.25 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.51 11.10 7.75 -10.98 -0.09 11.01 16 15 O -0.52 -14.08 16.08 -14.35 -0.23 -14.31 16 16 C 0.05 0.74 4.73 36.00 0.17 0.91 16 17 O -0.36 -6.17 9.86 -55.14 -0.54 -6.72 16 18 C 0.08 0.94 4.52 36.00 0.16 1.10 16 19 C -0.12 -1.40 9.84 -36.22 -0.36 -1.76 16 20 C -0.12 -1.22 9.81 -37.57 -0.37 -1.59 16 21 C -0.06 -0.56 5.19 -105.01 -0.54 -1.11 16 22 C -0.12 -1.08 7.41 -39.20 -0.29 -1.37 16 23 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 24 C -0.12 -0.96 10.04 -39.50 -0.40 -1.36 16 25 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 26 C -0.11 -0.98 9.79 -39.19 -0.38 -1.36 16 27 H 0.07 1.16 6.66 -51.93 -0.35 0.82 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.92 5.77 -51.93 -0.30 0.62 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 34 H 0.04 0.93 6.43 -51.92 -0.33 0.60 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 0.99 7.79 -51.93 -0.40 0.58 16 38 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 39 H 0.06 0.60 7.52 -51.92 -0.39 0.21 16 40 H 0.07 0.78 5.29 -51.93 -0.27 0.50 16 41 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.05 5.79 -52.48 -0.30 0.75 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -34.70 384.52 -9.77 -44.46 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.27 Total: 0.09 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -2.84 Total: -7.37 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.34 Total: -38.87 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.77 Total: -21.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.70 -9.77 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531655545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.730 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds