Wall clock time and date at job start Fri Apr 10 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 N 1.46501 * 109.47144 * 120.00012 * 2 1 3 5 5 C 1.46497 * 120.00292 * 300.00040 * 4 2 1 6 6 C 1.50696 * 109.47033 * 269.99987 * 5 4 2 7 7 H 1.08002 * 119.99882 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99633 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00369 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99794 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47011 * 119.99844 * 10 8 6 13 13 H 1.48491 * 109.47205 * 239.99997 * 10 8 6 14 14 C 1.34783 * 120.00004 * 119.99772 * 4 2 1 15 15 O 1.21277 * 120.00116 * 180.02562 * 14 4 2 16 16 C 1.50697 * 119.99922 * 0.02562 * 14 4 2 17 17 O 1.42901 * 109.47516 * 179.97438 * 16 14 4 18 18 C 1.42893 * 114.00493 * 179.97438 * 17 16 14 19 19 C 1.50694 * 109.47451 * 179.97438 * 18 17 16 20 20 C 1.32564 * 120.00601 * 135.99695 * 19 18 17 21 21 C 1.47813 * 119.99292 * 8.07111 * 20 19 18 22 22 C 1.39532 * 120.14779 * 34.97599 * 21 20 19 23 23 C 1.37970 * 119.86028 * 179.97438 * 22 21 20 24 24 C 1.38347 * 120.14274 * 359.97438 * 23 22 21 25 25 C 1.38346 * 120.28318 * 0.02562 * 24 23 22 26 26 C 1.37969 * 120.14252 * 0.02562 * 25 24 23 27 27 H 1.08994 * 109.47088 * 299.99610 * 1 2 3 28 28 H 1.09000 * 109.47027 * 59.99693 * 1 2 3 29 29 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46966 * 239.99971 * 2 1 3 31 31 H 1.09003 * 109.47029 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47359 * 300.00104 * 3 2 1 33 33 H 1.09005 * 109.47163 * 60.00092 * 3 2 1 34 34 H 1.09009 * 109.46688 * 30.00069 * 5 4 2 35 35 H 1.09001 * 109.47411 * 149.99190 * 5 4 2 36 36 H 0.96997 * 119.99587 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47351 * 59.99810 * 16 14 4 38 38 H 1.09001 * 109.47336 * 300.00288 * 16 14 4 39 39 H 1.09008 * 109.47093 * 60.00277 * 18 17 16 40 40 H 1.08996 * 109.47074 * 300.00215 * 18 17 16 41 41 H 1.08008 * 119.99961 * 316.00291 * 19 18 17 42 42 H 1.07991 * 120.00643 * 188.06451 * 20 19 18 43 43 H 1.08007 * 120.07092 * 359.96221 * 22 21 20 44 44 H 1.08004 * 119.92934 * 180.02562 * 23 22 21 45 45 H 1.07996 * 119.85770 * 179.74341 * 24 23 22 46 46 H 1.07993 * 119.92693 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.07152 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5811 1.4106 4.2140 9 7 1.5580 1.1262 4.9898 10 14 3.8691 2.6396 4.7799 11 1 4.9105 2.7836 3.7311 12 1 3.2251 3.9558 5.0212 13 1 4.4953 2.1570 6.0369 14 6 2.7932 -1.7865 1.0725 15 8 3.1971 -2.3585 2.0627 16 6 3.1577 -2.3010 -0.2962 17 8 3.9796 -3.4626 -0.1652 18 6 4.3828 -4.0330 -1.4118 19 6 5.2411 -5.2449 -1.1555 20 6 5.0487 -6.3536 -1.8562 21 6 4.1193 -6.3495 -3.0056 22 6 4.0062 -5.2159 -3.8112 23 6 3.1372 -5.2187 -4.8829 24 6 2.3793 -6.3425 -5.1598 25 6 2.4868 -7.4697 -4.3649 26 6 3.3513 -7.4794 -3.2897 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.6904 0.2973 2.4843 35 1 1.6237 -1.0227 3.2291 36 1 1.4720 1.5549 5.8557 37 1 3.7029 -1.5302 -0.8409 38 1 2.2495 -2.5577 -0.8416 39 1 4.9530 -3.2981 -1.9801 40 1 3.4999 -4.3261 -1.9797 41 1 6.0131 -5.2101 -0.4009 42 1 5.5710 -7.2598 -1.5874 43 1 4.5975 -4.3380 -3.5962 44 1 3.0491 -4.3420 -5.5074 45 1 1.6975 -6.3382 -5.9973 46 1 1.8922 -8.3436 -4.5861 47 1 3.4346 -8.3601 -2.6702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531655545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:14 Heat of formation + Delta-G solvation = -53.382065 kcal Electronic energy + Delta-G solvation = -26062.751226 eV Core-core repulsion = 22403.516686 eV Total energy + Delta-G solvation = -3659.234540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97034 -40.31661 -38.71710 -37.49222 -35.61005 -34.92854 -32.44053 -31.95160 -31.08323 -30.27688 -28.37773 -27.92548 -26.82074 -24.65270 -23.42407 -23.19382 -22.74699 -20.42395 -19.66806 -18.63239 -18.57755 -17.59531 -17.40306 -17.31356 -16.75813 -16.53383 -16.04952 -15.88284 -15.62209 -15.08223 -14.87462 -14.82039 -14.42746 -14.25272 -14.16359 -13.88508 -13.56689 -13.42545 -13.34773 -13.23739 -13.03724 -12.83589 -12.73944 -12.58282 -12.46055 -12.22898 -12.09154 -11.92717 -11.69863 -11.62463 -11.51445 -11.10484 -10.61754 -10.56288 -10.49561 -9.77378 -9.45472 -9.19587 -8.19758 -6.31460 0.05445 0.51606 1.31848 1.35258 1.38233 1.49260 1.75717 2.05498 2.39790 2.92061 3.05511 3.10835 3.63241 3.80075 3.94235 3.98812 4.09055 4.12282 4.19013 4.20686 4.26234 4.32203 4.34763 4.40963 4.41518 4.61072 4.62891 4.81701 4.84480 4.88572 5.00342 5.06254 5.06543 5.12415 5.17609 5.22444 5.39860 5.42399 5.44455 5.58888 5.63759 5.64410 5.66171 5.78002 5.86100 6.09934 6.11309 6.15548 6.73781 6.80041 7.30649 7.47460 8.88098 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.002640 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.995549 B =10604.351843 C =11280.235967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.264 3.736 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.269 1.269 13 H -0.285 1.285 14 C 0.491 3.509 15 O -0.589 6.589 16 C 0.059 3.941 17 O -0.397 6.397 18 C 0.077 3.923 19 C -0.153 4.153 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.121 4.121 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.030 0.970 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -11.155 -26.004 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 C -0.210 4.210 4 N -0.327 5.327 5 C 0.143 3.857 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.212 1.212 14 C 0.279 3.721 15 O -0.469 6.469 16 C -0.020 4.020 17 O -0.316 6.316 18 C 0.003 3.997 19 C -0.171 4.171 20 C -0.124 4.124 21 C -0.081 4.081 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.139 4.139 27 H 0.058 0.942 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.138 0.862 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.498 -11.471 -25.162 27.694 hybrid contribution 0.541 0.620 1.130 1.398 sum 2.039 -10.851 -24.032 26.447 Atomic orbital electron populations 1.22133 0.94072 1.02283 1.03021 1.21495 0.95470 0.94246 0.86757 1.22092 1.00694 0.95595 1.02662 1.48343 1.49097 1.26509 1.08737 1.18675 0.95475 0.92549 0.78992 1.21682 1.08907 1.23380 1.02351 0.92737 1.25825 0.97863 0.99195 0.96499 1.70063 1.31316 1.44610 1.11156 0.85439 0.79060 0.78711 0.78050 1.19052 1.19437 1.21154 1.21067 0.78646 0.80654 0.91703 1.90653 1.54724 1.59500 1.42008 1.22284 0.97080 0.89447 0.93223 1.88008 1.69416 1.43109 1.31098 1.22194 0.98092 0.94255 0.85200 1.23078 0.99113 0.94023 1.00895 1.21841 0.97999 0.97696 0.94892 1.19304 0.97768 0.94976 0.96050 1.21700 0.99608 0.97693 0.95425 1.21421 0.96314 0.99451 0.97315 1.21580 0.99393 0.93177 1.00147 1.21416 0.98765 0.99418 0.95054 1.21520 0.96394 0.98035 0.97915 0.94243 0.88114 0.92532 0.86625 0.93726 0.88821 0.93723 0.95171 0.99306 0.92606 0.87674 0.87595 0.90226 0.90622 0.86167 0.84043 0.84883 0.83798 0.83942 0.84114 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.17 71.98 0.66 -3.53 16 2 C 0.12 3.66 3.17 44.99 0.14 3.80 16 3 C -0.15 -4.62 8.47 71.98 0.61 -4.01 16 4 N -0.59 -25.54 2.39 -802.14 -1.91 -27.45 16 5 C 0.26 14.45 4.59 85.63 0.39 14.84 16 6 C -0.52 -30.33 7.83 25.60 0.20 -30.13 16 7 H 0.05 3.13 7.63 -2.91 -0.02 3.10 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 10 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 C 0.49 21.83 7.75 87.65 0.68 22.50 16 15 O -0.59 -33.59 16.08 16.02 0.26 -33.33 16 16 C 0.06 1.78 4.73 71.23 0.34 2.11 16 17 O -0.40 -13.41 9.86 -129.94 -1.28 -14.69 16 18 C 0.08 1.78 4.52 71.23 0.32 2.10 16 19 C -0.15 -3.42 9.84 24.53 0.24 -3.18 16 20 C -0.11 -2.01 9.81 23.65 0.23 -1.78 16 21 C -0.08 -1.49 5.19 -20.12 -0.10 -1.59 16 22 C -0.13 -2.06 7.41 22.52 0.17 -1.89 16 23 C -0.13 -1.73 10.03 22.23 0.22 -1.50 16 24 C -0.13 -1.61 10.04 22.32 0.22 -1.39 16 25 C -0.13 -1.80 10.03 22.23 0.22 -1.57 16 26 C -0.12 -1.99 9.79 22.52 0.22 -1.77 16 27 H 0.04 1.29 6.66 -2.39 -0.02 1.27 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.12 2.46 5.77 -2.38 -0.01 2.45 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.04 1.69 6.92 -2.38 -0.02 1.67 16 34 H 0.03 1.67 6.43 -2.38 -0.02 1.65 16 35 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.11 2.48 7.79 -2.39 -0.02 2.46 16 38 H 0.11 2.44 7.79 -2.39 -0.02 2.42 16 39 H 0.08 1.44 7.52 -2.38 -0.02 1.42 16 40 H 0.08 1.59 5.29 -2.39 -0.01 1.58 16 41 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.14 2.14 8.06 -2.92 -0.02 2.12 16 43 H 0.13 1.89 5.79 -2.91 -0.02 1.87 16 44 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -81.58 384.52 5.55 -76.03 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.95 Total: 14.91 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.23 Total: -6.26 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.63 Total: -84.44 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.02 Total: -48.02 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -81.58 5.55 -76.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531655545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.649 kcal (2) G-P(sol) polarization free energy of solvation -81.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds