Wall clock time and date at job start Fri Apr 10 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46877 * 2 1 4 4 N 1.46496 * 109.47297 * 119.99716 * 2 1 3 5 5 C 1.46502 * 120.00236 * 300.00671 * 4 2 1 6 6 C 1.50701 * 109.46797 * 269.99689 * 5 4 2 7 7 H 1.08006 * 119.99959 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00136 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99817 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00306 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47288 * 89.99962 * 10 8 6 12 12 H 1.48500 * 109.47544 * 210.00628 * 10 8 6 13 13 H 1.48503 * 109.47133 * 330.00211 * 10 8 6 14 14 C 1.34777 * 119.99888 * 119.99730 * 4 2 1 15 15 O 1.21282 * 119.99907 * 180.02562 * 14 4 2 16 16 C 1.50694 * 120.00157 * 0.02562 * 14 4 2 17 17 O 1.42901 * 109.47303 * 179.97438 * 16 14 4 18 18 C 1.42906 * 113.99809 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46616 * 180.02562 * 18 17 16 20 20 C 1.32568 * 119.99964 * 135.00183 * 19 18 17 21 21 C 1.47818 * 120.00099 * 179.97438 * 20 19 18 22 22 C 1.39530 * 120.13805 * 179.97438 * 21 20 19 23 23 C 1.37975 * 119.85264 * 179.97438 * 22 21 20 24 24 C 1.38345 * 120.14230 * 0.02562 * 23 22 21 25 25 C 1.38342 * 120.28567 * 359.97438 * 24 23 22 26 26 C 1.37970 * 120.14109 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47306 * 300.00399 * 1 2 3 28 28 H 1.09006 * 109.46881 * 59.99743 * 1 2 3 29 29 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47062 * 240.00037 * 2 1 3 31 31 H 1.09001 * 109.46732 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46753 * 299.99889 * 3 2 1 33 33 H 1.08996 * 109.47244 * 60.00148 * 3 2 1 34 34 H 1.08998 * 109.46924 * 29.99115 * 5 4 2 35 35 H 1.08995 * 109.47300 * 149.99536 * 5 4 2 36 36 H 0.97006 * 120.00076 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47127 * 59.99279 * 16 14 4 38 38 H 1.09004 * 109.47350 * 299.99748 * 16 14 4 39 39 H 1.08996 * 109.47160 * 60.00267 * 18 17 16 40 40 H 1.09003 * 109.47341 * 300.00150 * 18 17 16 41 41 H 1.08001 * 120.00191 * 314.99432 * 19 18 17 42 42 H 1.08001 * 119.99850 * 359.97438 * 20 19 18 43 43 H 1.08001 * 120.07796 * 0.02562 * 22 21 20 44 44 H 1.08003 * 119.92978 * 179.72663 * 23 22 21 45 45 H 1.08000 * 119.85265 * 179.97438 * 24 23 22 46 46 H 1.08003 * 119.92532 * 179.97438 * 25 24 23 47 47 H 1.08004 * 120.06942 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5431 1.0358 2.3457 8 6 2.5811 1.4109 4.2139 9 7 1.5585 1.1257 4.9901 10 14 3.8689 2.6399 4.7798 11 1 3.4769 4.0041 4.3433 12 1 3.9705 2.6041 6.2609 13 1 5.1835 2.2886 4.1850 14 6 2.7932 -1.7863 1.0725 15 8 3.1971 -2.3583 2.0628 16 6 3.1576 -2.3010 -0.2962 17 8 3.9796 -3.4626 -0.1650 18 6 4.3828 -4.0330 -1.4117 19 6 5.2401 -5.2456 -1.1553 20 6 5.0340 -6.3603 -1.8425 21 6 5.8752 -7.5496 -1.5914 22 6 5.6604 -8.7245 -2.3127 23 6 6.4495 -9.8309 -2.0739 24 6 7.4514 -9.7771 -1.1214 25 6 7.6694 -8.6152 -0.4030 26 6 6.8874 -7.5019 -0.6322 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.6904 0.2974 2.4843 35 1 1.6238 -1.0226 3.2291 36 1 1.4728 1.5538 5.8564 37 1 3.7028 -1.5301 -0.8409 38 1 2.2495 -2.5578 -0.8415 39 1 4.9529 -3.2981 -1.9801 40 1 3.4998 -4.3262 -1.9797 41 1 6.0224 -5.2064 -0.4118 42 1 4.2514 -6.3996 -2.5858 43 1 4.8789 -8.7677 -3.0568 44 1 6.2815 -10.7424 -2.6283 45 1 8.0660 -10.6461 -0.9380 46 1 8.4530 -8.5798 0.3395 47 1 7.0588 -6.5952 -0.0709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531655548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:20 Heat of formation + Delta-G solvation = -60.772097 kcal Electronic energy + Delta-G solvation = -25336.968702 eV Core-core repulsion = 21677.413706 eV Total energy + Delta-G solvation = -3659.554996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93080 -40.09997 -38.79592 -37.48289 -35.51772 -34.92685 -32.43028 -31.89578 -31.53800 -30.35343 -28.26352 -27.87777 -26.44146 -24.62289 -23.85302 -22.85430 -22.72608 -20.47146 -19.67276 -18.62319 -18.53156 -18.00080 -17.46653 -17.16563 -16.74985 -16.41609 -16.04646 -15.81571 -15.58377 -15.11800 -14.84841 -14.71607 -14.37829 -14.21845 -14.04040 -13.89956 -13.86646 -13.36973 -13.34322 -13.26589 -13.04599 -12.82114 -12.73869 -12.52175 -12.31195 -12.21920 -12.10340 -11.98131 -11.74967 -11.65617 -11.52301 -11.28115 -10.65959 -10.60817 -10.52754 -9.87051 -9.44661 -9.07439 -8.19563 -6.31224 -0.06139 0.49213 1.34901 1.38430 1.45235 1.48256 1.77453 2.06772 2.39653 2.94815 3.06080 3.10676 3.62258 3.84981 3.86849 3.96469 4.10269 4.15529 4.19273 4.24826 4.26199 4.33428 4.40835 4.43062 4.46662 4.54294 4.62384 4.68743 4.83938 4.89433 5.01247 5.05793 5.07088 5.13148 5.13268 5.23088 5.34886 5.45142 5.46068 5.59436 5.60654 5.62690 5.64784 5.83263 5.86928 6.09165 6.10819 6.16989 6.74325 6.81080 7.31157 7.48732 8.87920 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.002249 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.723725 B =12444.457163 C =13492.732466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.264 3.736 6 C -0.525 4.525 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.490 3.510 15 O -0.591 6.591 16 C 0.058 3.942 17 O -0.399 6.399 18 C 0.087 3.913 19 C -0.154 4.154 20 C -0.104 4.104 21 C -0.077 4.077 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.136 4.136 27 H 0.037 0.963 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.030 0.970 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -14.458 -22.874 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.020 3.980 3 C -0.211 4.211 4 N -0.327 5.327 5 C 0.143 3.857 6 C -0.564 4.564 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.278 3.722 15 O -0.471 6.471 16 C -0.021 4.021 17 O -0.318 6.318 18 C 0.011 3.989 19 C -0.172 4.172 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.154 4.154 27 H 0.056 0.944 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.152 0.848 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.586 -14.776 -22.025 27.104 hybrid contribution 0.542 0.860 1.171 1.551 sum 6.128 -13.916 -20.854 25.809 Atomic orbital electron populations 1.22135 0.94084 1.02338 1.02950 1.21502 0.95453 0.94195 0.86809 1.22096 1.00700 0.95702 1.02602 1.48342 1.49125 1.26538 1.08694 1.18665 0.95446 0.92523 0.79075 1.21652 1.08943 1.23422 1.02360 0.92778 1.25825 0.97882 0.99216 0.96523 1.70057 1.31364 1.44516 1.11118 0.85492 0.79082 0.79419 0.77293 1.18699 1.20959 1.19986 1.21131 0.78587 0.80622 0.91834 1.90659 1.54756 1.59559 1.42125 1.22321 0.97281 0.89453 0.93070 1.88036 1.69562 1.43181 1.31031 1.21700 0.98065 0.93780 0.85318 1.23133 0.99718 0.94346 1.00024 1.21788 0.99078 0.90671 1.00611 1.19280 0.96361 0.94788 0.97247 1.21574 1.00095 0.92134 0.99480 1.21470 0.95432 0.99158 0.98294 1.21574 0.98472 0.98351 0.96089 1.21371 0.99930 0.93305 1.00325 1.21566 0.96178 0.99365 0.98263 0.94369 0.88154 0.92393 0.86380 0.93722 0.88862 0.93819 0.95170 0.99333 0.92626 0.87646 0.86933 0.90006 0.89922 0.87693 0.83760 0.83734 0.83412 0.83883 0.84758 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.17 71.98 0.66 -3.44 16 2 C 0.12 3.59 3.17 45.00 0.14 3.73 16 3 C -0.15 -4.59 8.47 71.98 0.61 -3.98 16 4 N -0.59 -25.26 2.39 -802.15 -1.91 -27.18 16 5 C 0.26 14.39 4.60 85.63 0.39 14.79 16 6 C -0.53 -30.34 7.83 25.60 0.20 -30.14 16 7 H 0.05 3.10 7.63 -2.91 -0.02 3.07 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 10 Si 0.96 45.83 29.54 68.60 2.03 47.85 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 14 C 0.49 21.47 7.75 87.65 0.68 22.15 16 15 O -0.59 -33.58 16.08 16.00 0.26 -33.32 16 16 C 0.06 1.67 4.73 71.23 0.34 2.00 16 17 O -0.40 -12.99 9.86 -129.94 -1.28 -14.28 16 18 C 0.09 1.82 6.36 71.24 0.45 2.27 16 19 C -0.15 -3.45 9.31 24.53 0.23 -3.22 16 20 C -0.10 -1.95 9.51 23.65 0.22 -1.72 16 21 C -0.08 -1.54 5.87 -20.12 -0.12 -1.66 16 22 C -0.12 -1.84 9.79 22.52 0.22 -1.62 16 23 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 24 C -0.13 -1.91 10.04 22.32 0.22 -1.69 16 25 C -0.13 -2.38 10.03 22.23 0.22 -2.16 16 26 C -0.14 -2.91 9.40 22.52 0.21 -2.69 16 27 H 0.04 1.24 6.66 -2.39 -0.02 1.22 16 28 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 2.40 5.77 -2.39 -0.01 2.38 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.65 6.92 -2.39 -0.02 1.63 16 34 H 0.03 1.66 6.43 -2.39 -0.02 1.65 16 35 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 36 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 37 H 0.11 2.36 7.79 -2.39 -0.02 2.34 16 38 H 0.11 2.32 7.79 -2.38 -0.02 2.30 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.26 7.88 -2.39 -0.02 1.25 16 41 H 0.11 2.66 6.04 -2.91 -0.02 2.64 16 42 H 0.14 1.91 7.92 -2.91 -0.02 1.89 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.12 2.60 6.17 -2.91 -0.02 2.59 16 Total: -1.00 -82.86 389.64 5.69 -77.17 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.94 Total: 14.93 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.38 Total: -8.25 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.63 Total: -84.10 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -1.02 Total: -47.60 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -82.86 5.69 -77.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531655548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.400 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds