Wall clock time and date at job start Fri Apr 10 2020 23:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47033 * 269.99955 * 3 2 1 5 5 H 1.48497 * 109.46824 * 30.00595 * 3 2 1 6 6 H 1.48500 * 109.47061 * 150.00265 * 3 2 1 7 7 C 1.37876 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47568 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47010 * 305.00179 * 11 10 9 13 13 N 1.46897 * 109.47241 * 64.99635 * 11 10 9 14 14 C 1.50699 * 109.47305 * 184.99909 * 11 10 9 15 15 O 1.21286 * 120.00169 * 265.28985 * 14 11 10 16 16 N 1.34779 * 120.00027 * 85.29426 * 14 11 10 17 17 C 1.46537 * 124.97743 * 5.06476 * 16 14 11 18 18 C 1.53743 * 105.19779 * 180.02562 * 17 16 14 19 19 H 1.09003 * 110.41465 * 241.22321 * 18 17 16 20 20 C 1.53003 * 110.41498 * 118.77329 * 18 17 16 21 21 C 1.52997 * 109.46991 * 70.40881 * 20 18 17 22 22 N 1.46901 * 109.46916 * 174.93602 * 21 20 18 23 23 C 1.51222 * 104.57961 * 359.97438 * 18 17 16 24 24 C 1.38182 * 130.96964 * 179.97438 * 23 18 17 25 25 C 1.38227 * 120.15262 * 180.02562 * 24 23 18 26 26 C 1.38299 * 119.82368 * 359.97438 * 25 24 23 27 27 C 1.37844 * 120.22241 * 0.25106 * 26 25 24 28 28 C 1.38555 * 108.55848 * 0.02562 * 23 18 17 29 29 H 0.96996 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47327 * 60.00155 * 9 7 2 31 31 H 1.09000 * 109.47326 * 300.00039 * 9 7 2 32 32 H 1.09000 * 109.47666 * 59.99699 * 10 9 7 33 33 H 1.09008 * 109.47109 * 299.99975 * 10 9 7 34 34 H 1.00900 * 110.99839 * 60.00327 * 13 11 10 35 35 H 1.00905 * 111.00342 * 183.95819 * 13 11 10 36 36 H 1.08996 * 110.30100 * 61.10386 * 17 16 14 37 37 H 1.09002 * 110.29986 * 298.96660 * 17 16 14 38 38 H 1.08998 * 109.46751 * 190.40858 * 20 18 17 39 39 H 1.08998 * 109.47062 * 310.40329 * 20 18 17 40 40 H 1.09004 * 109.46663 * 294.93140 * 21 20 18 41 41 H 1.08994 * 109.47508 * 54.93069 * 21 20 18 42 42 H 1.00900 * 111.00329 * 56.04125 * 22 21 20 43 43 H 1.00896 * 111.00039 * 179.97438 * 22 21 20 44 44 H 1.08000 * 119.92231 * 0.02562 * 24 23 18 45 45 H 1.07992 * 120.08761 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.88651 * 179.97438 * 26 25 24 47 47 H 1.08001 * 119.85658 * 179.72488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7879 -5.0073 0.8404 13 7 0.7290 -5.1182 -1.2566 14 6 2.4550 -6.1298 0.1226 15 8 2.8611 -6.6911 -0.8729 16 7 2.8753 -6.5282 1.3397 17 6 2.3786 -6.0018 2.6138 18 6 3.1590 -6.7646 3.6967 19 1 2.4763 -7.3349 4.3267 20 6 3.9838 -5.7937 4.5440 21 6 3.0472 -4.9567 5.4175 22 7 3.8426 -4.1109 6.3176 23 6 4.0675 -7.6961 2.9262 24 6 4.9963 -8.6217 3.3623 25 6 5.7169 -9.3662 2.4473 26 6 5.5056 -9.1832 1.0929 27 6 4.5834 -8.2577 0.6533 28 6 3.8493 -7.5043 1.5715 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6044 0.8894 33 1 2.8720 -3.6043 -0.8906 34 1 1.3491 -5.1022 -2.0524 35 1 0.1646 -5.9546 -1.2547 36 1 1.3102 -6.1940 2.7117 37 1 2.5793 -4.9327 2.6852 38 1 4.6672 -6.3566 5.1797 39 1 4.5553 -5.1355 3.8896 40 1 2.4247 -4.3264 4.7824 41 1 2.4124 -5.6181 6.0070 42 1 4.4862 -3.5340 5.7969 43 1 3.2465 -3.5476 6.9052 44 1 5.1597 -8.7636 4.4204 45 1 6.4428 -10.0890 2.7892 46 1 6.0683 -9.7641 0.3771 47 1 4.4264 -8.1164 -0.4058 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522325278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:37 Heat of formation + Delta-G solvation = -42.689759 kcal Electronic energy + Delta-G solvation = -26911.459651 eV Core-core repulsion = 23284.981516 eV Total energy + Delta-G solvation = -3626.478136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44053 -40.23850 -37.89589 -36.95368 -36.31769 -34.88397 -33.69568 -32.03093 -31.12933 -30.77303 -28.42680 -27.96713 -25.85866 -24.45851 -23.82460 -22.67600 -22.04012 -21.62588 -20.51676 -18.71456 -18.36251 -17.63365 -17.31674 -17.10230 -16.73444 -16.53271 -16.51515 -16.15134 -15.85844 -15.44203 -15.06253 -14.97636 -14.66165 -14.52103 -14.29550 -13.93845 -13.79029 -13.62054 -13.48178 -13.27424 -12.89498 -12.84797 -12.76105 -12.54097 -12.35805 -12.20392 -11.98719 -11.80387 -11.69698 -11.59801 -11.30701 -11.26544 -11.06714 -10.52119 -9.79283 -9.78493 -9.58903 -8.85956 -8.16657 -6.26988 0.20596 0.39034 1.38151 1.40270 1.41481 1.51394 1.66173 2.41948 2.80024 3.12384 3.16502 3.34229 3.47197 3.57135 3.69865 3.91608 4.00242 4.07621 4.11424 4.17864 4.27088 4.29833 4.39904 4.43990 4.55970 4.57476 4.62476 4.68243 4.71230 4.82893 4.94731 5.02438 5.13816 5.17937 5.26031 5.30383 5.43264 5.49444 5.52860 5.58400 5.78176 5.93397 5.96155 6.05672 6.19123 6.24557 6.26403 6.39591 6.57794 6.77904 6.90210 7.41186 8.94402 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.003847 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.371072 B = 7277.148865 C = 8830.788523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.079 4.079 11 C 0.095 3.905 12 H 0.112 0.888 13 N -0.814 5.814 14 C 0.492 3.508 15 O -0.557 6.557 16 N -0.551 5.551 17 C 0.089 3.911 18 C -0.039 4.039 19 H 0.123 0.877 20 C -0.096 4.096 21 C 0.057 3.943 22 N -0.859 5.859 23 C -0.132 4.132 24 C -0.075 4.075 25 C -0.138 4.138 26 C -0.099 4.099 27 C -0.161 4.161 28 C 0.113 3.887 29 H 0.263 0.737 30 H 0.008 0.992 31 H -0.002 1.002 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.347 0.653 35 H 0.348 0.652 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.025 0.975 41 H 0.086 0.914 42 H 0.342 0.658 43 H 0.349 0.651 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.144 0.856 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -18.295 12.533 23.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.007 3.993 10 C -0.118 4.118 11 C -0.021 4.021 12 H 0.130 0.870 13 N -0.344 5.344 14 C 0.281 3.719 15 O -0.435 6.435 16 N -0.274 5.274 17 C -0.032 4.032 18 C -0.058 4.058 19 H 0.141 0.859 20 C -0.134 4.134 21 C -0.074 4.074 22 N -0.389 5.389 23 C -0.135 4.135 24 C -0.094 4.094 25 C -0.156 4.156 26 C -0.117 4.117 27 C -0.182 4.182 28 C 0.018 3.982 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.104 0.896 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.175 0.825 46 H 0.162 0.838 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.005 -18.360 12.404 23.559 hybrid contribution 0.195 1.079 -1.325 1.720 sum 8.200 -17.281 11.079 22.105 Atomic orbital electron populations 1.70089 1.07516 1.27574 1.51478 1.25839 0.95671 1.02809 0.94861 0.85582 0.78800 0.79135 0.78336 1.20249 1.20510 1.18912 1.21667 0.93194 0.92704 1.50740 0.92959 1.18784 0.93615 0.90875 0.96015 1.21368 0.97863 0.92130 1.00419 1.21628 0.93253 0.91331 0.95879 0.87006 1.58987 1.26992 1.45354 1.03032 1.22679 0.82553 0.85126 0.81527 1.90608 1.58367 1.57361 1.37177 1.46166 1.37147 1.36537 1.07540 1.22676 1.00519 0.99710 0.80275 1.20696 0.95626 0.94389 0.95097 0.85921 1.21506 0.97791 0.96993 0.97100 1.21878 0.95048 0.96105 0.94353 1.58798 1.23327 1.30341 1.26401 1.20251 1.00985 1.00573 0.91660 1.20764 0.93631 0.93582 1.01387 1.21412 1.01012 1.01027 0.92184 1.21194 0.96518 0.96671 0.97365 1.20981 0.99120 0.98925 0.99127 1.18820 0.92042 0.91923 0.95388 0.92833 0.97377 0.98385 0.92209 0.94030 0.83887 0.83799 0.87908 0.89650 0.89551 0.93369 0.95622 0.89559 0.84629 0.83794 0.82766 0.82471 0.83848 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.28 4.86 29.85 0.15 2.42 16 10 C -0.08 -3.27 4.78 30.59 0.15 -3.13 16 11 C 0.09 3.24 2.69 44.17 0.12 3.36 16 12 H 0.11 3.48 7.23 -2.39 -0.02 3.46 16 13 N -0.81 -27.68 8.49 -171.81 -1.46 -29.14 16 14 C 0.49 16.58 6.99 87.66 0.61 17.20 16 15 O -0.56 -21.53 14.49 -3.05 -0.04 -21.57 16 16 N -0.55 -15.90 3.13 -629.49 -1.97 -17.87 16 17 C 0.09 1.95 5.54 86.62 0.48 2.43 16 18 C -0.04 -0.68 3.02 -11.12 -0.03 -0.71 16 19 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 20 C -0.10 -1.58 4.77 30.59 0.15 -1.44 16 21 C 0.06 0.90 6.59 86.30 0.57 1.46 16 22 N -0.86 -13.89 9.62 -186.72 -1.80 -15.69 16 23 C -0.13 -2.80 5.55 -19.64 -0.11 -2.91 16 24 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 25 C -0.14 -2.26 10.06 22.28 0.22 -2.04 16 26 C -0.10 -2.08 10.02 22.19 0.22 -1.86 16 27 C -0.16 -4.59 9.46 22.51 0.21 -4.38 16 28 C 0.11 3.18 6.62 38.28 0.25 3.43 16 29 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.01 0.44 7.75 -2.39 -0.02 0.43 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.06 2.34 7.59 -2.39 -0.02 2.32 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.35 12.12 8.56 -89.69 -0.77 11.35 16 35 H 0.35 10.05 9.06 -89.69 -0.81 9.23 16 36 H 0.10 1.86 7.95 -2.39 -0.02 1.84 16 37 H 0.09 2.00 6.52 -2.39 -0.02 1.99 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 40 H 0.03 0.45 7.33 -2.38 -0.02 0.44 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.34 5.57 8.99 -89.69 -0.81 4.76 16 43 H 0.35 4.85 9.08 -89.70 -0.81 4.03 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 47 H 0.11 3.64 6.30 -2.91 -0.02 3.63 16 Total: -1.00 -71.30 380.81 -1.24 -72.54 By element: Atomic # 1 Polarization: 40.08 SS G_CDS: -2.18 Total: 37.90 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.91 Total: -16.87 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.94 Total: -117.99 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.30 -1.24 -72.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522325278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.850 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds